Wall clock time and date at job start Tue Mar 31 2020 12:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00140 * 2 1 4 4 O 1.20825 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00029 * 179.97438 * 3 2 1 6 6 C 1.50707 * 109.46847 * 180.02562 * 5 3 2 7 7 C 1.38119 * 119.57322 * 125.02705 * 6 5 3 8 8 C 1.38800 * 119.30670 * 179.97438 * 7 6 5 9 9 C 1.38401 * 118.49222 * 359.72531 * 8 7 6 10 10 C 1.38996 * 119.10338 * 0.51194 * 9 8 7 11 11 N 1.39410 * 119.69519 * 179.75406 * 10 9 8 12 12 C 1.34777 * 120.00202 * 185.06471 * 11 10 9 13 13 O 1.21283 * 119.99518 * 354.91939 * 12 11 10 14 14 C 1.50698 * 120.00156 * 174.64225 * 12 11 10 15 15 C 1.52999 * 109.47059 * 180.28153 * 14 12 11 16 16 C 1.53003 * 109.47045 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47045 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47059 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00200 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47179 * 120.00370 * 22 20 18 25 25 H 1.48507 * 109.46899 * 240.00295 * 22 20 18 26 26 N 1.31902 * 119.57578 * 304.99631 * 6 5 3 27 27 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47212 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47018 * 60.00178 * 1 2 3 30 30 H 1.08996 * 109.47061 * 60.00038 * 5 3 2 31 31 H 1.08997 * 109.47366 * 299.99564 * 5 3 2 32 32 H 1.07993 * 120.34875 * 359.96813 * 7 6 5 33 33 H 1.07994 * 120.75392 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.44702 * 180.26128 * 9 8 7 35 35 H 0.96998 * 120.00060 * 5.07132 * 11 10 9 36 36 H 1.09003 * 109.46872 * 300.27367 * 14 12 11 37 37 H 1.08999 * 109.46909 * 60.27682 * 14 12 11 38 38 H 1.09008 * 109.46886 * 299.99728 * 15 14 12 39 39 H 1.08999 * 109.47644 * 59.99979 * 15 14 12 40 40 H 1.09003 * 109.46702 * 299.99102 * 16 15 14 41 41 H 1.08999 * 109.47093 * 59.99425 * 16 15 14 42 42 H 1.09008 * 109.46886 * 299.99512 * 17 16 15 43 43 H 1.08999 * 109.47644 * 59.99763 * 17 16 15 44 44 H 0.97000 * 120.00660 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.8477 3.1780 0.9852 8 6 5.2380 4.5100 0.9801 9 6 4.7578 5.3349 -0.0221 10 6 3.8973 4.8072 -0.9777 11 7 3.4021 5.6283 -1.9897 12 6 2.4889 5.1510 -2.8585 13 8 2.1663 3.9826 -2.8181 14 6 1.8641 6.0705 -3.8759 15 6 0.8643 5.2852 -4.7270 16 6 0.2304 6.2186 -5.7604 17 6 -0.7690 5.4331 -6.6119 18 6 -1.3938 6.3526 -7.6294 19 1 -1.1071 7.3933 -7.6648 20 6 -2.3315 5.8654 -8.5150 21 7 -2.6810 4.5983 -8.4716 22 14 -3.1054 7.0051 -9.7766 23 1 -2.5464 8.3717 -9.6180 24 1 -2.8100 6.5043 -11.1431 25 1 -4.5756 7.0453 -9.5712 26 7 3.5476 3.5311 -0.9386 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 5.2079 2.5069 1.7507 33 1 5.9053 4.8928 1.7381 34 1 5.0445 6.3755 -0.0588 35 1 3.7148 6.5431 -2.0686 36 1 1.3466 6.8815 -3.3633 37 1 2.6419 6.4841 -4.5178 38 1 1.3817 4.4741 -5.2396 39 1 0.0865 4.8716 -4.0850 40 1 -0.2870 7.0298 -5.2481 41 1 1.0084 6.6318 -6.4023 42 1 -0.2513 4.6221 -7.1242 43 1 -1.5470 5.0196 -5.9703 44 1 -3.3404 4.2554 -9.0949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588714240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:12 Heat of formation + Delta-G solvation = -118.275712 kcal Electronic energy + Delta-G solvation = -25928.603719 eV Core-core repulsion = 22037.984695 eV Total energy + Delta-G solvation = -3890.619024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95103 -41.29565 -40.12256 -37.54323 -36.75651 -36.05997 -34.63820 -33.85315 -32.72147 -31.43841 -29.84165 -28.12273 -27.49866 -25.08835 -24.06027 -23.45863 -21.97984 -21.80043 -21.17060 -18.80783 -18.61604 -18.41740 -18.07763 -17.54908 -17.51824 -17.00014 -16.90484 -16.52265 -16.32631 -15.84963 -15.29910 -15.04119 -14.73632 -14.55801 -14.50892 -14.26164 -13.84062 -13.72342 -13.59783 -13.32521 -13.17400 -13.00690 -12.86832 -12.84653 -12.32667 -12.19349 -12.17587 -11.81855 -11.75782 -11.50544 -11.41304 -11.39767 -11.23194 -11.01437 -10.68349 -10.57990 -9.94733 -9.20211 -8.20548 -6.33160 0.07779 0.45488 1.24911 1.38833 1.40301 1.53834 1.66006 1.83291 1.93124 2.40467 2.97290 3.12071 3.14408 3.67317 3.86018 3.93330 3.99876 4.09553 4.10403 4.24115 4.26082 4.26893 4.35017 4.44456 4.51774 4.63253 4.64310 4.65282 4.77160 4.78343 4.83679 5.05587 5.14149 5.27906 5.30045 5.31452 5.36105 5.41584 5.54141 5.74567 5.85177 5.87371 6.22615 6.27133 6.77915 6.85440 7.04699 7.36626 7.43046 8.92204 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002464 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.281024 B =11359.198947 C =13084.259013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.455 3.545 4 O -0.527 6.527 5 C -0.055 4.055 6 C 0.127 3.873 7 C -0.186 4.186 8 C -0.047 4.047 9 C -0.198 4.198 10 C 0.328 3.672 11 N -0.653 5.653 12 C 0.496 3.504 13 O -0.520 6.520 14 C -0.123 4.123 15 C -0.095 4.095 16 C -0.094 4.094 17 C 0.018 3.982 18 C -0.540 4.540 19 H 0.068 0.932 20 C -0.009 4.009 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.256 1.256 24 H -0.278 1.278 25 H -0.279 1.279 26 N -0.505 5.505 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.129 0.871 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.436 0.564 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.042 0.958 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.065 0.935 42 H -0.016 1.016 43 H -0.019 1.019 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.315 -1.515 25.352 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.298 3.702 4 O -0.415 6.415 5 C -0.093 4.093 6 C -0.012 4.012 7 C -0.207 4.207 8 C -0.073 4.073 9 C -0.221 4.221 10 C 0.097 3.903 11 N -0.302 5.302 12 C 0.283 3.717 13 O -0.392 6.392 14 C -0.162 4.162 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.019 4.019 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.180 1.180 24 H -0.204 1.204 25 H -0.205 1.205 26 N -0.220 5.220 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.146 0.854 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.187 0.813 35 H 0.276 0.724 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.002 0.998 43 H -0.001 1.001 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.108 -2.451 24.578 31.849 hybrid contribution -0.679 0.749 -0.537 1.145 sum 19.429 -1.701 24.040 30.957 Atomic orbital electron populations 1.23415 0.75506 1.05452 1.01660 1.86454 1.24336 1.33016 1.84310 1.24109 0.93069 0.81071 0.71921 1.90729 1.67979 1.37611 1.45199 1.20421 0.86280 0.93421 1.09150 1.20792 0.94372 0.94576 0.91430 1.22207 1.00248 0.98140 1.00081 1.21854 0.96436 0.92357 0.96655 1.21896 1.00781 1.03422 0.95999 1.18908 0.93142 0.88483 0.89740 1.43606 1.41908 1.16264 1.28468 1.21590 0.78840 0.89178 0.82059 1.90820 1.59605 1.19298 1.69430 1.21686 1.00147 0.98092 0.96296 1.21234 0.97357 0.97946 0.96774 1.21436 0.97925 0.97566 0.96189 1.19058 0.93679 0.95039 0.94087 1.21776 1.22839 0.96681 1.16516 0.91419 1.26135 0.97435 0.96802 1.00201 1.70148 1.33411 1.15700 1.38735 0.85298 0.77953 0.79136 0.78030 1.17967 1.20359 1.20481 1.67213 1.24197 1.04100 1.26536 0.84633 0.91893 0.94109 0.85358 0.81420 0.80855 0.80167 0.81264 0.72355 0.86194 0.85561 0.93949 0.94620 0.92019 0.91646 0.99780 1.00067 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.36 -8.94 10.57 -51.40 -0.54 -9.48 16 3 C 0.46 12.70 7.89 71.23 0.56 13.27 16 4 O -0.53 -19.94 15.08 21.97 0.33 -19.61 16 5 C -0.06 -1.02 6.21 29.10 0.18 -0.84 16 6 C 0.13 2.88 5.76 42.52 0.24 3.12 16 7 C -0.19 -2.51 9.71 22.38 0.22 -2.29 16 8 C -0.05 -0.52 10.17 22.44 0.23 -0.29 16 9 C -0.20 -2.93 9.94 22.49 0.22 -2.70 16 10 C 0.33 8.18 7.42 132.90 0.99 9.17 16 11 N -0.65 -14.81 5.39 -308.46 -1.66 -16.47 16 12 C 0.50 15.62 7.79 87.66 0.68 16.30 16 13 O -0.52 -22.49 14.25 -3.04 -0.04 -22.53 16 14 C -0.12 -3.29 5.70 29.85 0.17 -3.12 16 15 C -0.09 -3.71 4.50 30.60 0.14 -3.57 16 16 C -0.09 -4.00 5.15 30.60 0.16 -3.84 16 17 C 0.02 1.05 4.97 29.85 0.15 1.20 16 18 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 19 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 20 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 21 N -0.94 -60.50 13.29 21.45 0.28 -60.21 16 22 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 N -0.51 -15.71 6.75 -181.11 -1.22 -16.93 16 27 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.17 1.28 7.86 -2.39 -0.02 1.26 16 32 H 0.17 0.88 7.94 -2.91 -0.02 0.86 16 33 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 34 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.44 5.36 8.70 -92.71 -0.81 4.55 16 36 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 37 H 0.13 2.55 8.14 -2.39 -0.02 2.54 16 38 H 0.04 1.80 8.10 -2.38 -0.02 1.78 16 39 H 0.03 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 43 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 44 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -96.41 380.80 5.20 -91.21 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.20 Total: 9.94 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.83 Total: -3.61 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -2.60 Total: -93.62 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.26 Total: -51.62 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -96.41 5.20 -91.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588714240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.065 kcal (2) G-P(sol) polarization free energy of solvation -96.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds