Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00276 * 2 1 4 4 O 1.20817 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99704 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46876 * 60.00733 * 5 3 2 7 7 N 1.46506 * 109.46573 * 180.02562 * 5 3 2 8 8 C 1.34773 * 119.99968 * 274.99986 * 7 5 3 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 5 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.52998 * 109.47348 * 179.72561 * 10 8 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 8 13 13 C 1.53008 * 109.46808 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46847 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99722 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00151 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 89.99874 * 18 16 14 20 20 H 1.48499 * 109.47352 * 210.00027 * 18 16 14 21 21 H 1.48505 * 109.47119 * 330.00031 * 18 16 14 22 22 C 1.50698 * 109.47719 * 300.00222 * 5 3 2 23 23 C 1.38228 * 119.61486 * 84.99908 * 22 5 3 24 24 C 1.38627 * 119.15829 * 179.97438 * 23 22 5 25 25 C 1.38674 * 118.42035 * 0.02562 * 24 23 22 26 26 C 1.38182 * 119.16355 * 359.97438 * 25 24 23 27 27 N 1.31850 * 119.61504 * 264.73057 * 22 5 3 28 28 H 1.08995 * 109.47452 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47178 * 300.00431 * 1 2 3 30 30 H 1.09000 * 109.47059 * 59.99779 * 1 2 3 31 31 H 0.96998 * 119.99507 * 95.00841 * 7 5 3 32 32 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 33 33 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 34 34 H 1.09000 * 109.46986 * 300.00089 * 11 10 8 35 35 H 1.09002 * 109.46857 * 60.00224 * 11 10 8 36 36 H 1.09000 * 109.47441 * 299.99910 * 12 11 10 37 37 H 1.08994 * 109.47235 * 60.00181 * 12 11 10 38 38 H 1.08996 * 109.46961 * 299.99496 * 13 12 11 39 39 H 1.08994 * 109.47402 * 59.99882 * 13 12 11 40 40 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 41 41 H 1.07994 * 120.42420 * 0.02562 * 23 22 5 42 42 H 1.07995 * 120.78977 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.41784 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.61700 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9563 0.7805 -0.8892 7 7 3.9817 2.6796 0.0011 8 6 4.0757 3.3549 -1.1614 9 8 3.8211 2.7983 -2.2085 10 6 4.5036 4.8000 -1.1610 11 6 4.5346 5.3232 -2.5984 12 6 4.9684 6.7903 -2.5978 13 6 4.9988 7.3137 -4.0353 14 6 5.4267 8.7587 -4.0348 15 1 5.6537 9.2543 -3.1024 16 6 5.5283 9.4480 -5.2245 17 7 5.9021 10.7089 -5.2242 18 14 5.1363 8.5905 -6.8372 19 1 3.6943 8.7589 -7.1495 20 1 5.9515 9.1868 -7.9258 21 1 5.4514 7.1442 -6.7182 22 6 4.1048 0.5917 1.2313 23 6 4.3055 -0.7759 1.2210 24 6 4.8016 -1.3943 2.3582 25 6 5.0781 -0.6106 3.4683 26 6 4.8520 0.7511 3.4045 27 7 4.3839 1.3064 2.3036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.1893 3.1236 0.8381 32 1 3.7967 5.3879 -0.5755 33 1 5.4976 4.8844 -0.7220 34 1 5.2414 4.7351 -3.1839 35 1 3.5405 5.2387 -3.0373 36 1 4.2613 7.3781 -2.0125 37 1 5.9624 6.8752 -2.1588 38 1 5.7058 6.7261 -4.6209 39 1 4.0047 7.2289 -4.4740 40 1 5.9733 11.1939 -6.0612 41 1 4.0794 -1.3551 0.3380 42 1 4.9689 -2.4610 2.3790 43 1 5.4661 -1.0588 4.3711 44 1 5.0643 1.3683 4.2650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588933973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = -95.716489 kcal Electronic energy + Delta-G solvation = -25984.358698 eV Core-core repulsion = 22094.717916 eV Total energy + Delta-G solvation = -3889.640783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43981 -40.31510 -39.52134 -36.85670 -35.45469 -34.86524 -32.96704 -32.63105 -32.16160 -30.17884 -28.97037 -27.31764 -25.61845 -24.12534 -23.34548 -22.31677 -21.08143 -20.27885 -19.96154 -18.34435 -17.82358 -17.37311 -16.83291 -16.74086 -16.59946 -16.44507 -15.93073 -15.59709 -15.09421 -14.60536 -14.15329 -14.13341 -13.97982 -13.74310 -13.66501 -13.56088 -12.98507 -12.60364 -12.46211 -12.29002 -12.23329 -11.99190 -11.70165 -11.12955 -11.11134 -11.05124 -10.68235 -10.48053 -10.44162 -10.13217 -10.02627 -9.78324 -9.68517 -9.58489 -9.39083 -9.36389 -9.06812 -8.44950 -5.96156 -3.93280 0.43624 0.71830 1.84233 2.07534 2.73039 2.94551 3.28931 3.39041 3.45602 3.48923 3.52068 4.15013 4.33320 4.43341 4.54225 4.54366 4.57519 4.66480 4.77672 4.86411 4.90242 5.00571 5.17541 5.18868 5.31074 5.37083 5.39987 5.50563 5.61594 5.84048 5.95917 6.02151 6.10499 6.13067 6.21956 6.47964 6.75201 6.88596 7.05400 7.31917 7.36596 7.39555 7.44202 7.56842 7.89525 8.14477 8.63253 9.09164 9.67361 11.17378 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.002285 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.871281 B =12251.244077 C =13074.449424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.453 3.547 4 O -0.481 6.481 5 C 0.214 3.786 6 H 0.141 0.859 7 N -0.708 5.708 8 C 0.521 3.479 9 O -0.535 6.535 10 C -0.135 4.135 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.116 3.884 23 C -0.142 4.142 24 C -0.071 4.071 25 C -0.165 4.165 26 C 0.106 3.894 27 N -0.475 5.475 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.418 0.582 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 -30.662 20.614 37.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.292 3.708 4 O -0.366 6.366 5 C 0.104 3.896 6 H 0.158 0.842 7 N -0.363 5.363 8 C 0.310 3.690 9 O -0.411 6.411 10 C -0.175 4.175 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.556 4.556 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.022 4.022 23 C -0.162 4.162 24 C -0.097 4.097 25 C -0.185 4.185 26 C -0.051 4.051 27 N -0.184 5.184 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.256 0.744 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.493 -29.675 19.699 36.039 hybrid contribution -0.270 -0.995 -0.364 1.093 sum -5.763 -30.670 19.335 36.711 Atomic orbital electron populations 1.23292 0.75962 1.03752 1.02788 1.86465 1.23696 1.33049 1.84219 1.24001 0.91867 0.81943 0.72984 1.90703 1.66196 1.36289 1.43408 1.18997 0.87112 0.85775 0.97678 0.84190 1.45772 1.69488 1.09866 1.11217 1.21233 0.75541 0.89632 0.82591 1.90695 1.48977 1.69947 1.31444 1.21757 1.03335 0.90449 1.01945 1.21493 1.02591 0.97534 0.92777 1.21475 1.00272 0.92365 0.99902 1.19582 0.96328 0.96816 0.92589 1.21193 1.45194 0.94435 0.94753 0.91087 1.25045 0.94736 0.94711 0.99184 1.69923 1.48551 1.09182 1.26952 0.86772 0.78503 0.80557 0.83450 1.20342 1.21501 1.18888 1.20566 0.97554 0.91113 0.93000 1.21889 0.99376 0.94622 1.00290 1.21626 0.94956 1.00851 0.92255 1.22259 1.00974 0.95426 0.99850 1.22772 0.94105 0.93045 0.95220 1.67178 1.11080 1.40641 0.99504 0.87907 0.91942 0.91595 0.74376 0.88552 0.88674 0.91745 0.91753 0.92797 0.92784 0.96619 0.97048 0.92864 0.83788 0.84142 0.84284 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.59 10.41 -39.25 -0.41 -4.00 16 3 C 0.45 5.64 7.28 36.01 0.26 5.91 16 4 O -0.48 -7.55 16.07 -18.74 -0.30 -7.85 16 5 C 0.21 2.31 2.73 -70.23 -0.19 2.12 16 6 H 0.14 1.43 7.54 -51.93 -0.39 1.04 16 7 N -0.71 -8.45 4.58 -56.06 -0.26 -8.71 16 8 C 0.52 7.66 7.66 -10.98 -0.08 7.58 16 9 O -0.54 -9.66 15.64 5.56 0.09 -9.57 16 10 C -0.14 -1.88 5.70 -27.88 -0.16 -2.03 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.10 -2.09 5.15 -26.73 -0.14 -2.23 16 13 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 14 C -0.52 -15.35 9.66 -34.44 -0.33 -15.69 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 17 N -0.91 -28.82 13.96 55.43 0.77 -28.05 16 18 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.63 6.54 56.52 0.37 -6.27 16 22 C 0.12 1.02 5.82 -82.59 -0.48 0.54 16 23 C -0.14 -0.91 9.69 -39.44 -0.38 -1.29 16 24 C -0.07 -0.33 10.18 -39.28 -0.40 -0.73 16 25 C -0.17 -0.75 10.11 -39.44 -0.40 -1.15 16 26 C 0.11 0.66 11.18 -17.55 -0.20 0.46 16 27 N -0.47 -4.20 9.03 -9.47 -0.09 -4.29 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.42 4.39 7.62 -40.82 -0.31 4.08 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 44 H 0.16 0.60 8.06 -52.48 -0.42 0.17 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -37.96 379.28 -7.46 -45.41 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.55 Total: -0.91 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.76 Total: -5.85 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.43 Total: -41.04 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.62 Total: -21.42 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.96 -7.46 -45.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588933973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.304 kcal (2) G-P(sol) polarization free energy of solvation -37.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds