Wall clock time and date at job start Tue Mar 31 2020 12:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00276 * 2 1 4 4 O 1.20817 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99704 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46876 * 60.00733 * 5 3 2 7 7 N 1.46506 * 109.46573 * 180.02562 * 5 3 2 8 8 C 1.34773 * 119.99968 * 274.99986 * 7 5 3 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 5 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.52998 * 109.47348 * 179.72561 * 10 8 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 8 13 13 C 1.53008 * 109.46808 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46847 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99722 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00151 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 89.99874 * 18 16 14 20 20 H 1.48499 * 109.47352 * 210.00027 * 18 16 14 21 21 H 1.48505 * 109.47119 * 330.00031 * 18 16 14 22 22 C 1.50698 * 109.47719 * 300.00222 * 5 3 2 23 23 C 1.38228 * 119.61486 * 84.99908 * 22 5 3 24 24 C 1.38627 * 119.15829 * 179.97438 * 23 22 5 25 25 C 1.38674 * 118.42035 * 0.02562 * 24 23 22 26 26 C 1.38182 * 119.16355 * 359.97438 * 25 24 23 27 27 N 1.31850 * 119.61504 * 264.73057 * 22 5 3 28 28 H 1.08995 * 109.47452 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47178 * 300.00431 * 1 2 3 30 30 H 1.09000 * 109.47059 * 59.99779 * 1 2 3 31 31 H 0.96998 * 119.99507 * 95.00841 * 7 5 3 32 32 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 33 33 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 34 34 H 1.09000 * 109.46986 * 300.00089 * 11 10 8 35 35 H 1.09002 * 109.46857 * 60.00224 * 11 10 8 36 36 H 1.09000 * 109.47441 * 299.99910 * 12 11 10 37 37 H 1.08994 * 109.47235 * 60.00181 * 12 11 10 38 38 H 1.08996 * 109.46961 * 299.99496 * 13 12 11 39 39 H 1.08994 * 109.47402 * 59.99882 * 13 12 11 40 40 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 41 41 H 1.07994 * 120.42420 * 0.02562 * 23 22 5 42 42 H 1.07995 * 120.78977 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.41784 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.61700 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9563 0.7805 -0.8892 7 7 3.9817 2.6796 0.0011 8 6 4.0757 3.3549 -1.1614 9 8 3.8211 2.7983 -2.2085 10 6 4.5036 4.8000 -1.1610 11 6 4.5346 5.3232 -2.5984 12 6 4.9684 6.7903 -2.5978 13 6 4.9988 7.3137 -4.0353 14 6 5.4267 8.7587 -4.0348 15 1 5.6537 9.2543 -3.1024 16 6 5.5283 9.4480 -5.2245 17 7 5.9021 10.7089 -5.2242 18 14 5.1363 8.5905 -6.8372 19 1 3.6943 8.7589 -7.1495 20 1 5.9515 9.1868 -7.9258 21 1 5.4514 7.1442 -6.7182 22 6 4.1048 0.5917 1.2313 23 6 4.3055 -0.7759 1.2210 24 6 4.8016 -1.3943 2.3582 25 6 5.0781 -0.6106 3.4683 26 6 4.8520 0.7511 3.4045 27 7 4.3839 1.3064 2.3036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.1893 3.1236 0.8381 32 1 3.7967 5.3879 -0.5755 33 1 5.4976 4.8844 -0.7220 34 1 5.2414 4.7351 -3.1839 35 1 3.5405 5.2387 -3.0373 36 1 4.2613 7.3781 -2.0125 37 1 5.9624 6.8752 -2.1588 38 1 5.7058 6.7261 -4.6209 39 1 4.0047 7.2289 -4.4740 40 1 5.9733 11.1939 -6.0612 41 1 4.0794 -1.3551 0.3380 42 1 4.9689 -2.4610 2.3790 43 1 5.4661 -1.0588 4.3711 44 1 5.0643 1.3683 4.2650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588933973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:26 Heat of formation + Delta-G solvation = -121.456007 kcal Electronic energy + Delta-G solvation = -25985.474847 eV Core-core repulsion = 22094.717916 eV Total energy + Delta-G solvation = -3890.756932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23605 -40.94344 -40.59936 -37.77966 -36.77720 -36.15501 -34.61948 -33.40405 -33.05735 -31.76655 -29.77130 -28.28241 -27.11377 -24.62966 -23.95247 -23.84438 -22.12021 -21.68090 -21.35228 -19.13863 -18.85905 -18.71007 -18.21499 -17.49803 -17.45670 -17.29696 -16.84412 -16.50506 -16.31698 -15.85064 -15.51218 -15.14426 -14.96790 -14.67119 -14.60182 -14.44513 -14.03707 -13.88205 -13.73813 -13.65367 -13.49313 -13.10838 -12.86567 -12.64749 -12.35300 -12.10097 -12.06494 -11.93448 -11.75431 -11.55299 -11.35764 -11.27297 -11.01056 -10.85700 -10.75907 -10.67034 -10.41173 -10.02030 -8.29410 -6.32463 -0.02720 0.32397 0.92387 1.19309 1.35022 1.36034 1.49369 1.68962 2.07595 2.36200 2.79868 2.86376 3.05782 3.63067 3.65993 3.72352 3.99350 4.02467 4.09885 4.13793 4.17032 4.21197 4.23333 4.25052 4.53694 4.60221 4.61570 4.63148 4.74910 4.81473 4.84567 5.02832 5.13317 5.14891 5.17804 5.19573 5.25951 5.28046 5.59686 5.65463 5.68540 5.71571 6.29731 6.35301 6.48391 6.75226 6.86796 7.07924 7.32148 8.87214 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.002285 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.871281 B =12251.244077 C =13074.449424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.454 3.546 4 O -0.523 6.523 5 C 0.212 3.788 6 H 0.142 0.858 7 N -0.697 5.697 8 C 0.521 3.479 9 O -0.575 6.575 10 C -0.129 4.129 11 C -0.096 4.096 12 C -0.094 4.094 13 C -0.017 4.017 14 C -0.530 4.530 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.251 1.251 22 C 0.093 3.907 23 C -0.145 4.145 24 C -0.070 4.070 25 C -0.155 4.155 26 C 0.090 3.910 27 N -0.502 5.502 28 H 0.141 0.859 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.425 0.575 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -33.813 21.733 40.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.411 6.411 5 C 0.103 3.897 6 H 0.160 0.840 7 N -0.351 5.351 8 C 0.310 3.690 9 O -0.454 6.454 10 C -0.169 4.169 11 C -0.134 4.134 12 C -0.132 4.132 13 C -0.054 4.054 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.175 1.175 22 C -0.045 4.045 23 C -0.165 4.165 24 C -0.096 4.096 25 C -0.175 4.175 26 C -0.067 4.067 27 N -0.212 5.212 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.264 0.736 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.188 0.812 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.325 -32.861 20.865 39.288 hybrid contribution -0.318 -0.048 -0.553 0.640 sum -5.644 -32.909 20.313 39.083 Atomic orbital electron populations 1.23583 0.74582 1.06071 1.02229 1.86464 1.25028 1.31727 1.83503 1.24374 0.92548 0.81940 0.71708 1.90677 1.67209 1.37592 1.45660 1.19125 0.86268 0.85057 0.99273 0.84038 1.45629 1.68277 1.10538 1.10654 1.21291 0.75112 0.89871 0.82700 1.90675 1.51059 1.70797 1.32857 1.21676 1.05390 0.90145 0.99678 1.21284 1.01363 0.95489 0.95274 1.21338 1.00867 0.94057 0.96890 1.19575 0.95909 0.94143 0.95781 1.21539 1.45002 0.96660 0.93607 0.94515 1.26005 0.94598 0.95408 1.03374 1.70062 1.49914 1.10913 1.28264 0.85682 0.78722 0.79919 0.78489 1.19375 1.20597 1.17471 1.20354 0.99686 0.91970 0.92453 1.22100 0.99079 0.93725 1.01603 1.22039 0.93731 1.02397 0.91421 1.22643 0.99252 0.94703 1.00869 1.23225 0.94016 0.94423 0.95009 1.67076 1.12168 1.41708 1.00289 0.84120 0.92143 0.92589 0.73573 0.87140 0.85981 0.92290 0.93208 0.92733 0.92152 0.96513 0.97026 0.92510 0.82536 0.81085 0.81196 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.84 10.41 -51.40 -0.53 -7.38 16 3 C 0.45 11.38 7.28 71.24 0.52 11.90 16 4 O -0.52 -16.83 16.07 21.99 0.35 -16.48 16 5 C 0.21 4.56 2.73 43.50 0.12 4.68 16 6 H 0.14 2.93 7.54 -2.39 -0.02 2.91 16 7 N -0.70 -16.48 4.58 -449.68 -2.06 -18.54 16 8 C 0.52 15.19 7.66 87.66 0.67 15.86 16 9 O -0.57 -20.96 15.64 -3.04 -0.05 -21.01 16 10 C -0.13 -3.45 5.70 29.85 0.17 -3.28 16 11 C -0.10 -3.33 4.50 30.59 0.14 -3.20 16 12 C -0.09 -3.79 5.15 30.60 0.16 -3.64 16 13 C -0.02 -0.84 4.04 29.85 0.12 -0.71 16 14 C -0.53 -31.98 9.66 25.60 0.25 -31.74 16 15 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 16 C 0.00 0.16 5.47 84.65 0.46 0.63 16 17 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 18 Si 0.95 46.87 27.47 68.60 1.88 48.75 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 22 C 0.09 1.55 5.82 42.55 0.25 1.80 16 23 C -0.14 -1.59 9.69 22.36 0.22 -1.37 16 24 C -0.07 -0.44 10.18 22.47 0.23 -0.21 16 25 C -0.16 -0.91 10.11 22.36 0.23 -0.68 16 26 C 0.09 0.94 11.18 84.67 0.95 1.88 16 27 N -0.50 -8.38 9.03 -183.89 -1.66 -10.04 16 28 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.42 8.75 7.62 -92.71 -0.71 8.04 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.10 8.10 -2.39 -0.02 2.09 16 35 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 39 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.17 -0.03 8.06 -2.91 -0.02 -0.06 16 43 H 0.17 -0.10 8.06 -2.91 -0.02 -0.13 16 44 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -84.31 379.28 4.14 -80.17 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.24 Total: 12.22 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.67 Total: -6.46 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -3.42 Total: -89.80 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.23 Total: -44.87 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.75 kcal Total: -84.31 4.14 -80.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588933973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.291 kcal (2) G-P(sol) polarization free energy of solvation -84.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds