Wall clock time and date at job start Tue Mar 31 2020 12:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 C 1.53000 * 109.46803 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47437 * 65.62737 * 4 3 2 6 6 C 1.46902 * 110.99521 * 287.04545 * 5 4 3 7 7 C 1.50693 * 109.47216 * 302.65192 * 6 5 4 8 8 H 1.08002 * 120.00198 * 4.52842 * 7 6 5 9 9 C 1.37880 * 120.00266 * 184.52717 * 7 6 5 10 10 N 1.31512 * 120.00611 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99835 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47162 * 89.99551 * 11 9 7 13 13 H 1.48495 * 109.47219 * 210.00001 * 11 9 7 14 14 H 1.48504 * 109.47072 * 330.00117 * 11 9 7 15 15 C 1.38454 * 111.00478 * 163.09311 * 5 4 3 16 16 N 1.31333 * 126.34695 * 16.56751 * 15 5 4 17 17 N 1.28504 * 110.15175 * 179.81933 * 16 15 5 18 18 C 1.31506 * 109.92280 * 0.45737 * 17 16 15 19 19 C 1.47127 * 126.50844 * 179.69243 * 18 17 16 20 20 C 1.36255 * 125.96008 * 344.75793 * 19 18 17 21 21 C 1.40828 * 106.72557 * 179.85141 * 20 19 18 22 22 C 1.34796 * 107.07178 * 0.40615 * 21 20 19 23 23 C 1.50696 * 125.63732 * 179.72512 * 22 21 20 24 24 O 1.34326 * 108.72023 * 359.74665 * 22 21 20 25 25 N 1.36581 * 126.35167 * 196.87644 * 15 5 4 26 26 C 1.46499 * 127.18462 * 359.97438 * 25 15 5 27 27 H 1.09010 * 109.47369 * 59.99684 * 1 2 3 28 28 H 1.08994 * 109.47663 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47014 * 300.00413 * 1 2 3 30 30 H 1.08994 * 109.47497 * 60.00015 * 3 2 1 31 31 H 1.08999 * 109.47459 * 299.99777 * 3 2 1 32 32 H 1.09008 * 109.46774 * 185.62260 * 4 3 2 33 33 H 1.09002 * 109.47384 * 305.61949 * 4 3 2 34 34 H 1.09005 * 109.47045 * 62.65551 * 6 5 4 35 35 H 1.09003 * 109.47256 * 182.65252 * 6 5 4 36 36 H 0.97001 * 120.00111 * 179.97438 * 10 9 7 37 37 H 1.07998 * 126.63690 * 359.97438 * 20 19 18 38 38 H 1.07999 * 126.46438 * 180.15147 * 21 20 19 39 39 H 1.09000 * 109.46924 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47067 * 300.00049 * 23 22 21 41 41 H 1.09001 * 109.47049 * 60.00083 * 23 22 21 42 42 H 1.08997 * 109.47767 * 95.48828 * 26 25 15 43 43 H 1.08997 * 109.47443 * 215.49444 * 26 25 15 44 44 H 1.09000 * 109.46757 * 335.49134 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9779 0.5763 -1.2625 6 6 3.6601 -0.8575 -1.2956 7 6 4.3026 -1.5419 -0.1167 8 1 4.8269 -0.9591 0.6262 9 6 4.2213 -2.9121 0.0135 10 7 4.7825 -3.5094 1.0420 11 14 3.3152 -3.9203 -1.2718 12 1 4.2629 -4.3271 -2.3404 13 1 2.7382 -5.1311 -0.6347 14 1 2.2242 -3.1040 -1.8624 15 6 5.3303 0.7896 -1.4687 16 7 6.2064 1.1625 -0.5642 17 7 7.3732 1.2632 -1.0930 18 6 7.3118 0.9694 -2.3733 19 6 8.4320 0.9742 -3.3272 20 6 9.6492 1.5536 -3.1290 21 6 10.4069 1.3124 -4.2913 22 6 9.6232 0.6140 -5.1368 23 6 10.0187 0.1396 -6.5113 24 8 8.4311 0.4113 -4.5517 25 7 5.9996 0.6568 -2.6519 26 6 5.4390 0.2635 -3.9470 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.9784 2.1754 0.1000 33 1 3.8507 0.5590 0.8345 34 1 2.5793 -0.9913 -1.2486 35 1 4.0402 -1.2927 -2.2198 36 1 4.7250 -4.4734 1.1337 37 1 9.9713 2.0918 -2.2498 38 1 11.4228 1.6309 -4.4727 39 1 9.1856 -0.3984 -6.9637 40 1 10.2771 0.9978 -7.1315 41 1 10.8796 -0.5243 -6.4327 42 1 5.2007 1.1558 -4.5259 43 1 6.1673 -0.3384 -4.4905 44 1 4.5319 -0.3195 -3.7882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589239100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:39 Heat of formation + Delta-G solvation = 75.404793 kcal Electronic energy + Delta-G solvation = -27749.825218 eV Core-core repulsion = 23899.897562 eV Total energy + Delta-G solvation = -3849.927656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71138 -42.12384 -38.07881 -36.29197 -34.53130 -33.23627 -32.56905 -32.29262 -30.03189 -29.27630 -27.77661 -26.81855 -26.00957 -25.59266 -22.98033 -22.33207 -21.72065 -21.22682 -20.11964 -19.60179 -17.49377 -17.19036 -16.44980 -16.36783 -15.90473 -15.81256 -15.49748 -14.93888 -14.83380 -14.37880 -14.14557 -13.87178 -13.37489 -13.25913 -13.05342 -13.00527 -12.92958 -12.60354 -12.39534 -12.09766 -11.98181 -11.97075 -11.50435 -11.20914 -11.12489 -11.06037 -10.76899 -10.46167 -10.14548 -10.06012 -9.93386 -9.74364 -9.55612 -9.22457 -9.14073 -8.54273 -8.20274 -7.35408 -6.05357 -4.04551 1.19125 2.24125 2.51626 2.71411 2.85377 3.24045 3.32592 3.34267 3.52742 4.26643 4.38458 4.41685 4.49030 4.77567 4.95165 4.98719 5.16903 5.22618 5.26267 5.31843 5.44310 5.46224 5.54259 5.57252 5.63140 5.67413 5.70567 5.74353 5.81300 5.88855 5.95244 5.99935 6.04864 6.16420 6.42127 6.48683 6.65703 6.72902 6.97148 7.07167 7.16275 7.30632 7.64949 7.71097 7.93675 8.44024 9.00241 9.22453 9.54062 11.07636 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.004109 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.800051 B = 6813.432987 C = 7575.478599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 C 0.069 3.931 5 N -0.457 5.457 6 C 0.154 3.846 7 C -0.542 4.542 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.893 5.893 11 Si 0.869 3.131 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.418 3.582 16 N -0.314 5.314 17 N -0.244 5.244 18 C 0.214 3.786 19 C 0.070 3.930 20 C -0.153 4.153 21 C -0.208 4.208 22 C -0.010 4.010 23 C -0.072 4.072 24 O -0.174 6.174 25 N -0.475 5.475 26 C 0.081 3.919 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 9.928 -14.096 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C -0.007 4.007 4 C -0.058 4.058 5 N -0.181 5.181 6 C 0.030 3.970 7 C -0.581 4.581 8 H 0.104 0.896 9 C -0.124 4.124 10 N -0.531 5.531 11 Si 0.696 3.304 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.063 3.937 16 N -0.160 5.160 17 N -0.088 5.088 18 C -0.049 4.049 19 C 0.018 3.982 20 C -0.175 4.175 21 C -0.227 4.227 22 C -0.061 4.061 23 C -0.129 4.129 24 O -0.070 6.070 25 N -0.169 5.169 26 C -0.062 4.062 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.867 10.025 -13.210 16.688 hybrid contribution -0.750 -1.325 -1.227 1.955 sum 1.118 8.700 -14.438 16.894 Atomic orbital electron populations 1.22684 0.82972 1.02247 0.98954 1.88267 1.17884 1.26771 1.94865 1.22502 0.93506 0.85279 0.99372 1.22085 0.92620 0.99781 0.91313 1.59354 1.04920 1.18502 1.35332 1.20689 0.99892 0.79558 0.96843 1.21524 1.35007 0.92962 1.08570 0.89643 1.24824 0.94739 0.97631 0.95213 1.69914 1.44126 1.09773 1.29252 0.86957 0.80787 0.80412 0.82200 1.20671 1.21068 1.18603 1.22574 0.91861 0.97608 0.81636 1.74726 0.94626 1.23989 1.22698 1.74317 1.16120 1.16784 1.01600 1.20752 0.81327 1.09845 0.92962 1.18298 0.93671 1.02403 0.83803 1.21737 0.91955 1.03488 1.00329 1.21482 1.01543 1.05238 0.94412 1.22526 0.83532 1.02792 0.97240 1.20317 1.02305 1.02027 0.88224 1.84002 1.34901 1.61887 1.26184 1.45993 1.07763 1.53057 1.10104 1.22062 1.00947 1.01573 0.81579 0.94858 0.90156 0.94740 0.93021 0.93482 0.89977 0.89301 0.90380 0.96789 0.92737 0.82304 0.82947 0.90597 0.89600 0.89528 0.90566 0.89717 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.71 7.68 -35.23 -0.27 -6.98 16 3 C 0.07 1.15 6.25 37.16 0.23 1.38 16 4 C 0.07 1.35 4.83 -3.82 -0.02 1.33 16 5 N -0.46 -9.57 4.66 -175.84 -0.82 -10.39 16 6 C 0.15 3.63 3.53 -4.98 -0.02 3.62 16 7 C -0.54 -15.26 8.27 -34.44 -0.28 -15.55 16 8 H 0.09 2.70 6.55 -52.49 -0.34 2.35 16 9 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 10 N -0.89 -27.81 13.96 55.43 0.77 -27.03 16 11 Si 0.87 21.39 27.38 -169.99 -4.65 16.74 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.26 -6.05 6.68 56.52 0.38 -5.67 16 15 C 0.42 9.18 6.10 -318.73 -1.94 7.23 16 16 N -0.31 -7.43 11.27 30.33 0.34 -7.09 16 17 N -0.24 -5.49 12.22 32.49 0.40 -5.09 16 18 C 0.21 4.29 7.89 -153.72 -1.21 3.08 16 19 C 0.07 1.18 7.07 -36.69 -0.26 0.93 16 20 C -0.15 -2.22 10.85 -39.32 -0.43 -2.65 16 21 C -0.21 -2.43 10.78 -39.82 -0.43 -2.86 16 22 C -0.01 -0.11 7.31 -35.53 -0.26 -0.37 16 23 C -0.07 -0.52 10.41 36.00 0.37 -0.14 16 24 O -0.17 -2.60 9.18 4.36 0.04 -2.56 16 25 N -0.47 -9.33 3.24 -122.18 -0.40 -9.72 16 26 C 0.08 1.23 10.76 59.85 0.64 1.88 16 27 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.47 7.75 -51.92 -0.40 1.07 16 33 H 0.09 2.05 5.88 -51.93 -0.31 1.75 16 34 H 0.08 1.85 4.85 -51.93 -0.25 1.59 16 35 H 0.01 0.33 5.45 -51.93 -0.28 0.05 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.19 6.86 -51.93 -0.36 0.83 16 44 H 0.10 1.50 6.21 -51.93 -0.32 1.18 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -35.29 362.27 -7.79 -43.08 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.08 Total: 2.02 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.59 Total: 1.56 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.30 Total: -59.32 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.23 Total: -9.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.65 Total: 16.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.29 -7.79 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589239100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.486 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds