Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 C 1.53000 * 109.46803 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47437 * 65.62737 * 4 3 2 6 6 C 1.46902 * 110.99521 * 287.04545 * 5 4 3 7 7 C 1.50693 * 109.47216 * 302.65192 * 6 5 4 8 8 H 1.08002 * 120.00198 * 4.52842 * 7 6 5 9 9 C 1.37880 * 120.00266 * 184.52717 * 7 6 5 10 10 N 1.31512 * 120.00611 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99835 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47162 * 89.99551 * 11 9 7 13 13 H 1.48495 * 109.47219 * 210.00001 * 11 9 7 14 14 H 1.48504 * 109.47072 * 330.00117 * 11 9 7 15 15 C 1.38454 * 111.00478 * 163.09311 * 5 4 3 16 16 N 1.31333 * 126.34695 * 16.56751 * 15 5 4 17 17 N 1.28504 * 110.15175 * 179.81933 * 16 15 5 18 18 C 1.31506 * 109.92280 * 0.45737 * 17 16 15 19 19 C 1.47127 * 126.50844 * 179.69243 * 18 17 16 20 20 C 1.36255 * 125.96008 * 344.75793 * 19 18 17 21 21 C 1.40828 * 106.72557 * 179.85141 * 20 19 18 22 22 C 1.34796 * 107.07178 * 0.40615 * 21 20 19 23 23 C 1.50696 * 125.63732 * 179.72512 * 22 21 20 24 24 O 1.34326 * 108.72023 * 359.74665 * 22 21 20 25 25 N 1.36581 * 126.35167 * 196.87644 * 15 5 4 26 26 C 1.46499 * 127.18462 * 359.97438 * 25 15 5 27 27 H 1.09010 * 109.47369 * 59.99684 * 1 2 3 28 28 H 1.08994 * 109.47663 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47014 * 300.00413 * 1 2 3 30 30 H 1.08994 * 109.47497 * 60.00015 * 3 2 1 31 31 H 1.08999 * 109.47459 * 299.99777 * 3 2 1 32 32 H 1.09008 * 109.46774 * 185.62260 * 4 3 2 33 33 H 1.09002 * 109.47384 * 305.61949 * 4 3 2 34 34 H 1.09005 * 109.47045 * 62.65551 * 6 5 4 35 35 H 1.09003 * 109.47256 * 182.65252 * 6 5 4 36 36 H 0.97001 * 120.00111 * 179.97438 * 10 9 7 37 37 H 1.07998 * 126.63690 * 359.97438 * 20 19 18 38 38 H 1.07999 * 126.46438 * 180.15147 * 21 20 19 39 39 H 1.09000 * 109.46924 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47067 * 300.00049 * 23 22 21 41 41 H 1.09001 * 109.47049 * 60.00083 * 23 22 21 42 42 H 1.08997 * 109.47767 * 95.48828 * 26 25 15 43 43 H 1.08997 * 109.47443 * 215.49444 * 26 25 15 44 44 H 1.09000 * 109.46757 * 335.49134 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9779 0.5763 -1.2625 6 6 3.6601 -0.8575 -1.2956 7 6 4.3026 -1.5419 -0.1167 8 1 4.8269 -0.9591 0.6262 9 6 4.2213 -2.9121 0.0135 10 7 4.7825 -3.5094 1.0420 11 14 3.3152 -3.9203 -1.2718 12 1 4.2629 -4.3271 -2.3404 13 1 2.7382 -5.1311 -0.6347 14 1 2.2242 -3.1040 -1.8624 15 6 5.3303 0.7896 -1.4687 16 7 6.2064 1.1625 -0.5642 17 7 7.3732 1.2632 -1.0930 18 6 7.3118 0.9694 -2.3733 19 6 8.4320 0.9742 -3.3272 20 6 9.6492 1.5536 -3.1290 21 6 10.4069 1.3124 -4.2913 22 6 9.6232 0.6140 -5.1368 23 6 10.0187 0.1396 -6.5113 24 8 8.4311 0.4113 -4.5517 25 7 5.9996 0.6568 -2.6519 26 6 5.4390 0.2635 -3.9470 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.9784 2.1754 0.1000 33 1 3.8507 0.5590 0.8345 34 1 2.5793 -0.9913 -1.2486 35 1 4.0402 -1.2927 -2.2198 36 1 4.7250 -4.4734 1.1337 37 1 9.9713 2.0918 -2.2498 38 1 11.4228 1.6309 -4.4727 39 1 9.1856 -0.3984 -6.9637 40 1 10.2771 0.9978 -7.1315 41 1 10.8796 -0.5243 -6.4327 42 1 5.2007 1.1558 -4.5259 43 1 6.1673 -0.3384 -4.4905 44 1 4.5319 -0.3195 -3.7882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589239100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = 51.810559 kcal Electronic energy + Delta-G solvation = -27750.848341 eV Core-core repulsion = 23899.897562 eV Total energy + Delta-G solvation = -3850.950779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.04777 -43.44094 -39.57566 -37.77870 -36.00638 -34.63612 -34.27289 -33.44578 -31.34571 -30.94618 -29.24678 -28.23708 -27.18352 -26.96552 -24.51483 -23.93242 -23.07813 -22.49348 -21.32638 -21.16321 -19.26687 -18.80004 -17.80470 -17.75069 -17.32954 -17.21424 -16.84317 -16.51952 -16.15633 -15.82096 -15.58194 -15.42450 -14.54844 -14.33393 -14.23177 -14.07434 -13.97458 -13.88270 -13.74580 -13.58130 -13.51532 -13.12421 -12.79778 -12.75631 -12.72422 -12.50036 -12.44961 -12.19963 -11.80840 -11.75535 -11.53280 -11.29639 -11.05660 -10.80115 -10.70013 -10.35809 -9.68552 -8.86043 -8.28015 -6.31969 -0.07781 0.99404 1.17804 1.29095 1.32783 1.44338 1.50717 1.53726 2.01539 2.32592 2.89172 3.03220 3.09368 3.31899 3.63390 3.87305 3.97885 4.00456 4.12080 4.21067 4.21922 4.38160 4.43149 4.49498 4.58571 4.60908 4.61951 4.68309 4.72737 4.77972 4.78607 4.87662 4.91024 4.94172 5.03237 5.09852 5.16260 5.25410 5.41385 5.50287 5.54634 5.78808 6.00531 6.20074 6.27266 6.48309 6.73145 7.29900 7.60685 8.89135 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.004109 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.800051 B = 6813.432987 C = 7575.478599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.078 3.922 4 C 0.071 3.929 5 N -0.440 5.440 6 C 0.168 3.832 7 C -0.535 4.535 8 H 0.034 0.966 9 C 0.012 3.988 10 N -0.949 5.949 11 Si 0.941 3.059 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.232 1.232 15 C 0.396 3.604 16 N -0.351 5.351 17 N -0.289 5.289 18 C 0.232 3.768 19 C 0.019 3.981 20 C -0.140 4.140 21 C -0.214 4.214 22 C 0.007 3.993 23 C -0.073 4.073 24 O -0.183 6.183 25 N -0.476 5.476 26 C 0.075 3.925 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.160 0.840 38 H 0.188 0.812 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 10.348 -18.310 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.001 3.999 4 C -0.056 4.056 5 N -0.163 5.163 6 C 0.043 3.957 7 C -0.574 4.574 8 H 0.052 0.948 9 C -0.186 4.186 10 N -0.590 5.590 11 Si 0.764 3.236 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.154 1.154 15 C 0.040 3.960 16 N -0.196 5.196 17 N -0.132 5.132 18 C -0.032 4.032 19 C -0.033 4.033 20 C -0.162 4.162 21 C -0.233 4.233 22 C -0.044 4.044 23 C -0.129 4.129 24 O -0.079 6.079 25 N -0.170 5.170 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.177 0.823 38 H 0.205 0.795 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.477 10.484 -17.436 20.398 hybrid contribution -0.400 -1.361 0.008 1.419 sum 1.077 9.123 -17.427 19.700 Atomic orbital electron populations 1.22871 0.80520 1.02954 1.00881 1.88158 1.20656 1.28092 1.95243 1.22501 0.90649 0.85043 1.01694 1.22088 0.95468 0.98953 0.89108 1.59465 1.04451 1.16760 1.35674 1.20462 0.99769 0.80816 0.94664 1.21698 1.33928 0.92932 1.08823 0.94784 1.25829 0.95924 0.99103 0.97707 1.70104 1.46697 1.10109 1.32103 0.85819 0.80148 0.78606 0.79068 1.19921 1.20933 1.15427 1.22733 0.92148 0.98741 0.82425 1.74581 0.95546 1.25109 1.24374 1.74196 1.15957 1.19790 1.03274 1.21301 0.82285 1.06856 0.92807 1.18113 0.93694 1.06413 0.85045 1.22061 0.91452 1.01525 1.01185 1.21866 1.02969 1.05445 0.93021 1.23607 0.82064 1.00341 0.98412 1.20622 1.03156 1.03560 0.85558 1.83989 1.36550 1.62026 1.25380 1.46274 1.07477 1.52479 1.10806 1.22372 1.00974 1.03247 0.79991 0.92593 0.90152 0.93075 0.90619 0.90967 0.89124 0.94051 0.89399 0.96144 0.92798 0.82252 0.79459 0.90045 0.86838 0.87498 0.87521 0.88585 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -14.62 7.68 -148.98 -1.14 -15.77 16 3 C 0.08 2.46 6.25 71.98 0.45 2.91 16 4 C 0.07 2.87 4.83 86.30 0.42 3.29 16 5 N -0.44 -18.71 4.66 -710.25 -3.31 -22.01 16 6 C 0.17 7.94 3.53 85.55 0.30 8.24 16 7 C -0.53 -31.46 8.27 25.60 0.21 -31.25 16 8 H 0.03 2.32 6.55 -2.91 -0.02 2.30 16 9 C 0.01 0.70 5.47 84.66 0.46 1.16 16 10 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 11 Si 0.94 44.27 27.38 68.60 1.88 46.15 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 H -0.23 -9.70 6.68 99.48 0.66 -9.03 16 15 C 0.40 17.99 6.10 260.06 1.59 19.58 16 16 N -0.35 -17.67 11.27 -57.94 -0.65 -18.32 16 17 N -0.29 -13.77 12.22 -51.11 -0.62 -14.40 16 18 C 0.23 9.56 7.89 135.87 1.07 10.63 16 19 C 0.02 0.63 7.07 24.14 0.17 0.80 16 20 C -0.14 -3.94 10.85 22.44 0.24 -3.70 16 21 C -0.21 -4.38 10.78 22.11 0.24 -4.14 16 22 C 0.01 0.14 7.31 24.89 0.18 0.33 16 23 C -0.07 -0.71 10.41 71.23 0.74 0.03 16 24 O -0.18 -5.13 9.18 -7.33 -0.07 -5.20 16 25 N -0.48 -18.91 3.24 -540.46 -1.75 -20.66 16 26 C 0.08 2.17 10.76 127.77 1.37 3.54 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 3.42 7.75 -2.38 -0.02 3.40 16 33 H 0.04 2.07 5.88 -2.39 -0.01 2.05 16 34 H 0.09 4.05 4.85 -2.38 -0.01 4.04 16 35 H 0.02 0.95 5.45 -2.39 -0.01 0.93 16 36 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 37 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.10 2.53 6.86 -2.39 -0.02 2.52 16 44 H 0.10 2.81 6.21 -2.39 -0.01 2.79 16 Total: -1.00 -83.64 362.27 4.31 -79.33 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.98 Total: 19.25 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 8.70 Total: 13.29 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -6.04 Total: -137.05 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.21 Total: -20.96 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -83.64 4.31 -79.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589239100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.143 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds