Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99987 * 2 1 4 4 O 1.20822 * 120.00503 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00056 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47106 * 299.99937 * 5 3 2 7 7 N 1.46498 * 109.47438 * 179.97438 * 5 3 2 8 8 C 1.34777 * 119.99828 * 84.72236 * 7 5 3 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 5 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 5 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47646 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99463 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00395 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99434 * 18 16 14 20 20 H 1.48495 * 109.47568 * 210.00065 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99683 * 18 16 14 22 22 C 1.50696 * 109.46897 * 59.99922 * 5 3 2 23 23 C 1.38676 * 120.42043 * 259.71899 * 22 5 3 24 24 C 1.38627 * 118.42143 * 179.78144 * 23 22 5 25 25 C 1.38232 * 119.16139 * 0.52319 * 24 23 22 26 26 N 1.31855 * 120.76265 * 359.71427 * 25 24 23 27 27 C 1.31891 * 121.72744 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47185 * 300.00270 * 1 2 3 29 29 H 1.09002 * 109.46333 * 60.00342 * 1 2 3 30 30 H 1.08998 * 109.47035 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00683 * 7 5 3 32 32 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 33 33 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 34 34 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 35 35 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 36 36 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 37 37 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 38 38 H 1.08998 * 109.47382 * 300.00476 * 13 12 11 39 39 H 1.09005 * 109.46800 * 60.00677 * 13 12 11 40 40 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.78720 * 0.02562 * 23 22 5 42 42 H 1.08000 * 120.42215 * 180.21977 * 24 23 22 43 43 H 1.07996 * 119.61753 * 179.75076 * 25 24 23 44 44 H 1.07993 * 119.62023 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 7 3.9818 2.6797 -0.0002 8 6 4.0694 3.3571 1.1617 9 8 3.8093 2.8022 2.2083 10 6 4.4908 4.8040 1.1605 11 6 4.5094 5.3310 2.5967 12 6 4.9378 6.7998 2.5955 13 6 4.9571 7.3266 4.0317 14 6 5.3784 8.7736 4.0305 15 1 5.6097 9.2678 3.0985 16 6 5.4696 9.4661 5.2192 17 7 5.1884 8.8641 6.3541 18 14 5.9911 11.2598 5.2176 19 1 4.7902 12.1244 5.0930 20 1 6.6960 11.5716 6.4868 21 1 6.9018 11.5094 4.0714 22 6 4.1056 0.5914 -1.2295 23 6 4.6091 -0.6984 -1.1524 24 6 5.0904 -1.2891 -2.3105 25 6 5.0629 -0.5739 -3.4931 26 7 4.5812 0.6530 -3.5281 27 6 4.1103 1.2445 -2.4473 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 4.1898 3.1236 -0.8372 32 1 5.4877 4.8918 0.7286 33 1 3.7857 5.3872 0.5682 34 1 3.5127 5.2432 3.0289 35 1 5.2149 4.7477 3.1886 36 1 5.9346 6.8873 2.1634 37 1 4.2327 7.3834 2.0035 38 1 3.9604 7.2392 4.4643 39 1 5.6625 6.7430 4.6233 40 1 5.2522 9.3514 7.1904 41 1 4.6221 -1.2315 -0.2133 42 1 5.4865 -2.2936 -2.2881 43 1 5.4397 -1.0254 -4.3988 44 1 3.7242 2.2507 -2.5149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589834291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -100.312290 kcal Electronic energy + Delta-G solvation = -25916.077358 eV Core-core repulsion = 22026.237287 eV Total energy + Delta-G solvation = -3889.840071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47948 -40.32047 -39.57899 -36.89621 -35.69153 -34.83731 -33.14129 -32.61601 -31.89828 -29.86254 -28.88010 -27.17297 -25.43703 -24.25097 -23.36404 -22.55317 -21.14479 -20.43064 -19.96165 -18.31944 -17.89065 -17.35584 -17.18486 -16.70937 -16.55339 -16.18344 -15.86627 -15.57481 -14.97569 -14.50828 -14.43765 -14.12547 -14.04399 -13.74339 -13.64564 -13.59299 -12.95623 -12.62088 -12.49124 -12.30185 -12.17381 -11.68943 -11.58486 -11.18503 -11.12914 -10.96637 -10.52788 -10.49314 -10.39513 -10.37523 -10.04827 -9.99714 -9.67660 -9.58746 -9.50187 -9.21059 -8.96494 -8.28333 -5.93131 -3.95517 0.42682 0.71416 1.82699 2.03806 2.67289 2.93085 3.32033 3.35786 3.41665 3.44941 3.70415 4.03612 4.26425 4.32235 4.45532 4.48160 4.50753 4.67297 4.77807 4.86584 4.88280 5.00297 5.15259 5.19371 5.31170 5.37426 5.42321 5.52228 5.59014 5.82071 5.90895 6.00172 6.08664 6.15466 6.31115 6.56041 6.85937 7.02891 7.14921 7.23819 7.36770 7.39736 7.76457 7.92507 8.06120 8.08670 8.50209 9.12201 9.68018 11.18228 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002155 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.984184 B =12992.272651 C =13807.898999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.451 3.549 4 O -0.485 6.485 5 C 0.207 3.793 6 H 0.137 0.863 7 N -0.719 5.719 8 C 0.523 3.477 9 O -0.527 6.527 10 C -0.136 4.136 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.150 4.150 23 C -0.044 4.044 24 C -0.168 4.168 25 C 0.106 3.894 26 N -0.479 5.479 27 C 0.113 3.887 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.160 0.840 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -25.388 -20.967 33.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.291 3.709 4 O -0.371 6.371 5 C 0.099 3.901 6 H 0.154 0.846 7 N -0.374 5.374 8 C 0.312 3.688 9 O -0.401 6.401 10 C -0.176 4.176 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.153 4.153 23 C -0.070 4.070 24 C -0.188 4.188 25 C -0.050 4.050 26 N -0.187 5.187 27 C -0.044 4.044 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.243 0.757 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.177 0.823 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.966 -24.981 -20.786 32.739 hybrid contribution 0.031 0.756 0.501 0.908 sum -3.935 -24.224 -20.286 31.840 Atomic orbital electron populations 1.23304 0.75938 1.03795 1.02799 1.86473 1.23693 1.33004 1.84065 1.24091 0.92020 0.81924 0.72888 1.90709 1.66367 1.36261 1.43723 1.18949 0.87009 0.85107 0.99072 0.84561 1.45966 1.70451 1.10091 1.10885 1.21262 0.75439 0.89630 0.82506 1.90716 1.48114 1.69997 1.31300 1.21804 1.03193 0.90197 1.02387 1.21468 1.02724 0.97645 0.92320 1.21648 0.99487 0.92382 1.01264 1.19098 0.97269 0.95386 0.89997 1.21283 1.45374 0.96474 0.92641 0.92744 1.25043 0.95645 0.98206 0.95726 1.69973 1.49374 1.36508 0.97648 0.86608 0.78671 0.85448 0.77338 1.20717 1.21278 1.19921 1.20464 1.03253 0.96544 0.95002 1.21500 0.92790 0.93087 0.99658 1.22202 1.01310 1.01884 0.93397 1.22944 0.94064 0.90005 0.98034 1.67777 1.09477 1.10977 1.30425 1.22591 0.94765 0.99757 0.87293 0.91571 0.91888 0.87922 0.75662 0.88753 0.88634 0.91721 0.91722 0.93410 0.93399 0.96591 0.96583 0.93064 0.83844 0.84016 0.82255 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.56 10.48 -39.24 -0.41 -3.97 16 3 C 0.45 5.29 7.27 36.01 0.26 5.55 16 4 O -0.49 -7.16 16.06 -18.75 -0.30 -7.46 16 5 C 0.21 2.01 2.70 -70.23 -0.19 1.82 16 6 H 0.14 1.32 7.47 -51.93 -0.39 0.93 16 7 N -0.72 -7.39 4.56 -56.07 -0.26 -7.65 16 8 C 0.52 7.29 7.65 -10.98 -0.08 7.20 16 9 O -0.53 -9.39 15.65 5.55 0.09 -9.31 16 10 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 11 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.15 -1.15 4.89 -104.48 -0.51 -1.66 16 23 C -0.04 -0.26 9.82 -39.28 -0.39 -0.65 16 24 C -0.17 -0.84 10.11 -39.44 -0.40 -1.24 16 25 C 0.11 0.65 11.18 -17.54 -0.20 0.46 16 26 N -0.48 -4.08 10.36 -13.25 -0.14 -4.22 16 27 C 0.11 0.91 10.23 -17.54 -0.18 0.73 16 28 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.09 6.89 -40.82 -0.28 2.81 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 35 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.16 1.05 6.92 -52.49 -0.36 0.69 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -37.56 381.54 -7.62 -45.18 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.49 Total: -2.01 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.58 Total: -6.37 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.34 Total: -38.89 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.63 Total: -20.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.56 -7.62 -45.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589834291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.129 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds