Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99987 * 2 1 4 4 O 1.20822 * 120.00503 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00056 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47106 * 299.99937 * 5 3 2 7 7 N 1.46498 * 109.47438 * 179.97438 * 5 3 2 8 8 C 1.34777 * 119.99828 * 84.72236 * 7 5 3 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 5 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 5 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47646 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99463 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00395 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99434 * 18 16 14 20 20 H 1.48495 * 109.47568 * 210.00065 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99683 * 18 16 14 22 22 C 1.50696 * 109.46897 * 59.99922 * 5 3 2 23 23 C 1.38676 * 120.42043 * 259.71899 * 22 5 3 24 24 C 1.38627 * 118.42143 * 179.78144 * 23 22 5 25 25 C 1.38232 * 119.16139 * 0.52319 * 24 23 22 26 26 N 1.31855 * 120.76265 * 359.71427 * 25 24 23 27 27 C 1.31891 * 121.72744 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47185 * 300.00270 * 1 2 3 29 29 H 1.09002 * 109.46333 * 60.00342 * 1 2 3 30 30 H 1.08998 * 109.47035 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00683 * 7 5 3 32 32 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 33 33 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 34 34 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 35 35 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 36 36 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 37 37 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 38 38 H 1.08998 * 109.47382 * 300.00476 * 13 12 11 39 39 H 1.09005 * 109.46800 * 60.00677 * 13 12 11 40 40 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.78720 * 0.02562 * 23 22 5 42 42 H 1.08000 * 120.42215 * 180.21977 * 24 23 22 43 43 H 1.07996 * 119.61753 * 179.75076 * 25 24 23 44 44 H 1.07993 * 119.62023 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 7 3.9818 2.6797 -0.0002 8 6 4.0694 3.3571 1.1617 9 8 3.8093 2.8022 2.2083 10 6 4.4908 4.8040 1.1605 11 6 4.5094 5.3310 2.5967 12 6 4.9378 6.7998 2.5955 13 6 4.9571 7.3266 4.0317 14 6 5.3784 8.7736 4.0305 15 1 5.6097 9.2678 3.0985 16 6 5.4696 9.4661 5.2192 17 7 5.1884 8.8641 6.3541 18 14 5.9911 11.2598 5.2176 19 1 4.7902 12.1244 5.0930 20 1 6.6960 11.5716 6.4868 21 1 6.9018 11.5094 4.0714 22 6 4.1056 0.5914 -1.2295 23 6 4.6091 -0.6984 -1.1524 24 6 5.0904 -1.2891 -2.3105 25 6 5.0629 -0.5739 -3.4931 26 7 4.5812 0.6530 -3.5281 27 6 4.1103 1.2445 -2.4473 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 4.1898 3.1236 -0.8372 32 1 5.4877 4.8918 0.7286 33 1 3.7857 5.3872 0.5682 34 1 3.5127 5.2432 3.0289 35 1 5.2149 4.7477 3.1886 36 1 5.9346 6.8873 2.1634 37 1 4.2327 7.3834 2.0035 38 1 3.9604 7.2392 4.4643 39 1 5.6625 6.7430 4.6233 40 1 5.2522 9.3514 7.1904 41 1 4.6221 -1.2315 -0.2133 42 1 5.4865 -2.2936 -2.2881 43 1 5.4397 -1.0254 -4.3988 44 1 3.7242 2.2507 -2.5149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589834291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -125.459781 kcal Electronic energy + Delta-G solvation = -25917.167835 eV Core-core repulsion = 22026.237287 eV Total energy + Delta-G solvation = -3890.930548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26947 -40.95625 -40.62326 -37.79514 -36.79557 -36.35448 -34.63296 -33.72198 -32.61022 -31.40848 -29.70483 -28.13423 -27.03004 -24.82950 -24.17931 -23.95696 -22.18134 -21.68325 -21.39672 -19.10129 -18.70177 -18.43604 -18.15975 -17.88277 -17.46031 -17.36201 -16.84711 -16.57912 -16.48191 -15.63420 -15.46276 -15.08473 -14.95664 -14.58461 -14.53875 -14.50592 -14.04425 -13.82795 -13.63747 -13.60278 -13.30356 -13.13923 -12.82586 -12.80755 -12.34238 -12.17306 -12.14909 -12.09966 -11.92536 -11.39670 -11.37859 -11.22461 -10.98681 -10.82395 -10.54847 -10.53661 -10.49643 -10.10603 -8.18496 -6.30549 -0.07372 0.25332 0.93776 1.17861 1.40307 1.42667 1.53724 1.67340 2.10126 2.42118 2.79380 3.09559 3.14137 3.53867 3.65484 3.65761 3.76496 3.93722 4.02002 4.04955 4.14144 4.20894 4.23169 4.28820 4.51491 4.61348 4.63887 4.67804 4.72223 4.82550 4.87400 4.99146 5.10907 5.16054 5.18418 5.18673 5.32941 5.37964 5.57117 5.65192 5.78512 5.88419 6.24950 6.27273 6.49278 6.87832 6.91491 7.04350 7.38937 8.93791 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002155 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.984184 B =12992.272651 C =13807.898999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.450 3.550 4 O -0.524 6.524 5 C 0.210 3.790 6 H 0.137 0.863 7 N -0.703 5.703 8 C 0.523 3.477 9 O -0.574 6.574 10 C -0.128 4.128 11 C -0.096 4.096 12 C -0.096 4.096 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.156 4.156 23 C -0.048 4.048 24 C -0.159 4.159 25 C 0.099 3.901 26 N -0.506 5.506 27 C 0.102 3.898 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.421 0.579 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.058 0.942 38 H -0.017 1.017 39 H -0.013 1.013 40 H 0.263 0.737 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.185 0.815 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -26.018 -23.411 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.292 3.708 4 O -0.412 6.412 5 C 0.102 3.898 6 H 0.154 0.846 7 N -0.358 5.358 8 C 0.312 3.688 9 O -0.452 6.452 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.133 4.133 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.159 4.159 23 C -0.074 4.074 24 C -0.178 4.178 25 C -0.057 4.057 26 N -0.215 5.215 27 C -0.055 4.055 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.260 0.740 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.001 0.999 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.179 0.821 42 H 0.192 0.808 43 H 0.202 0.798 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.903 -25.636 -23.296 34.761 hybrid contribution -0.336 0.815 1.239 1.520 sum -3.239 -24.821 -22.057 33.363 Atomic orbital electron populations 1.23574 0.74659 1.05961 1.02302 1.86470 1.24978 1.32047 1.83472 1.24506 0.92789 0.81830 0.71712 1.90688 1.67334 1.37422 1.45732 1.19008 0.85913 0.84630 1.00262 0.84586 1.45756 1.69007 1.10511 1.10480 1.21300 0.74904 0.89861 0.82689 1.90703 1.50484 1.70947 1.33111 1.21693 1.05797 0.89993 0.99225 1.21250 1.00685 0.95955 0.95500 1.21446 1.00860 0.93872 0.97157 1.19059 0.94382 0.94990 0.93437 1.21753 1.45333 0.97507 0.93293 0.91593 1.26098 0.95489 1.03669 0.95225 1.70131 1.50451 1.38777 0.98481 0.85378 0.78616 0.78780 0.77845 1.19816 1.20878 1.18279 1.20295 1.04472 0.97343 0.93811 1.21819 0.92083 0.92467 1.01024 1.22541 1.00002 1.02981 0.92313 1.23472 0.93241 0.89393 0.99593 1.67790 1.10568 1.12374 1.30720 1.22655 0.95238 1.00162 0.87449 0.92664 0.91851 0.84434 0.73970 0.85453 0.86568 0.94180 0.93213 0.91745 0.92308 0.99887 0.99475 0.92860 0.82073 0.80830 0.79820 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.88 10.48 -51.36 -0.54 -7.41 16 3 C 0.45 10.56 7.27 71.24 0.52 11.08 16 4 O -0.52 -15.75 16.06 21.98 0.35 -15.40 16 5 C 0.21 3.97 2.70 43.50 0.12 4.09 16 6 H 0.14 2.60 7.47 -2.39 -0.02 2.59 16 7 N -0.70 -13.94 4.56 -449.69 -2.05 -15.99 16 8 C 0.52 14.44 7.65 87.66 0.67 15.11 16 9 O -0.57 -21.06 15.65 -3.04 -0.05 -21.10 16 10 C -0.13 -3.24 5.70 29.85 0.17 -3.07 16 11 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16 12 C -0.10 -3.97 5.15 30.59 0.16 -3.82 16 13 C 0.02 1.03 4.97 29.85 0.15 1.17 16 14 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 17 N -0.94 -59.58 13.29 21.44 0.28 -59.30 16 18 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 C -0.16 -2.21 4.89 -19.77 -0.10 -2.30 16 23 C -0.05 -0.47 9.82 22.47 0.22 -0.25 16 24 C -0.16 -1.10 10.11 22.36 0.23 -0.87 16 25 C 0.10 0.98 11.18 84.69 0.95 1.92 16 26 N -0.51 -7.90 10.36 -195.84 -2.03 -9.93 16 27 C 0.10 1.53 10.23 84.67 0.87 2.39 16 28 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.42 5.85 6.89 -92.71 -0.64 5.21 16 32 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 38 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 43 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.16 2.04 6.92 -2.91 -0.02 2.02 16 Total: -1.00 -84.47 381.54 4.34 -80.14 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.37 Total: 9.48 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.97 Total: -7.82 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.80 Total: -85.22 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.23 Total: -43.92 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -84.47 4.34 -80.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589834291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.325 kcal (2) G-P(sol) polarization free energy of solvation -84.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds