Wall clock time and date at job start Tue Mar 31 2020 13:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39754 * 125.83379 * 2 1 4 4 C 1.36109 * 107.82914 * 179.97438 * 3 2 1 5 5 N 1.39476 * 126.22085 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99727 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99769 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.46859 * 186.43731 * 8 6 5 10 10 H 1.08998 * 110.21894 * 307.46535 * 9 8 6 11 11 C 1.54485 * 110.24691 * 69.48416 * 9 8 6 12 12 C 1.54635 * 101.76379 * 144.41245 * 11 9 8 13 13 C 1.51281 * 104.19730 * 335.20468 * 12 11 9 14 14 O 1.21279 * 124.94114 * 196.23162 * 13 12 11 15 15 N 1.34423 * 110.11720 * 16.25243 * 13 12 11 16 16 C 1.46492 * 124.35102 * 180.43082 * 15 13 12 17 17 N 1.35262 * 107.56542 * 359.97438 * 4 3 2 18 18 C 1.46502 * 126.04859 * 179.97438 * 17 4 3 19 19 C 1.50704 * 109.46865 * 270.02522 * 18 17 4 20 20 H 1.07999 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00212 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47495 * 120.00222 * 23 21 19 26 26 H 1.48504 * 109.47072 * 240.00506 * 23 21 19 27 27 N 1.30846 * 125.84108 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47229 * 90.00093 * 1 2 3 29 29 H 1.08998 * 109.46927 * 209.99762 * 1 2 3 30 30 H 1.09003 * 109.47384 * 329.99751 * 1 2 3 31 31 H 1.08005 * 126.09026 * 359.71910 * 3 2 1 32 32 H 0.96995 * 119.99909 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.46751 * 306.43334 * 8 6 5 34 34 H 1.08997 * 109.47091 * 66.43861 * 8 6 5 35 35 H 1.08996 * 110.96929 * 262.53364 * 11 9 8 36 36 H 1.09000 * 110.96485 * 26.29585 * 11 9 8 37 37 H 1.08994 * 110.48331 * 216.52372 * 12 11 9 38 38 H 1.09002 * 110.59391 * 93.94164 * 12 11 9 39 39 H 1.09003 * 109.46852 * 266.76596 * 16 15 13 40 40 H 1.08993 * 109.47298 * 26.76334 * 16 15 13 41 41 H 1.09001 * 109.47150 * 146.76321 * 16 15 13 42 42 H 1.08995 * 109.46959 * 30.02806 * 18 17 4 43 43 H 1.08999 * 109.46879 * 150.03060 * 18 17 4 44 44 H 0.97001 * 120.00533 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 0.0006 5 7 4.7512 1.5277 0.0003 6 6 4.6155 2.8686 -0.0002 7 8 3.5094 3.3662 0.0002 8 6 5.8382 3.7496 -0.0011 9 6 5.4140 5.2107 0.1603 10 1 4.6597 5.4682 -0.5831 11 6 4.8686 5.4548 1.5849 12 6 5.3651 6.8911 1.8708 13 6 6.5732 7.0513 0.9745 14 8 7.4145 7.9170 1.0910 15 7 6.5782 6.0949 0.0300 16 6 7.6130 5.9530 -0.9972 17 7 3.6092 -0.6403 0.0015 18 6 4.7871 -1.5114 0.0018 19 6 5.1909 -1.8106 -1.4189 20 1 4.6270 -1.3932 -2.2400 21 6 6.2811 -2.6163 -1.6706 22 7 6.9682 -3.1242 -0.6708 23 14 6.7822 -2.9866 -3.4316 24 1 5.8540 -2.2997 -4.3652 25 1 8.1664 -2.5020 -3.6647 26 1 6.7250 -4.4521 -3.6648 27 7 2.2731 -1.0607 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9900 2.1598 -0.0043 32 1 5.6357 1.1297 0.0004 33 1 6.4901 3.4671 0.8255 34 1 6.3727 3.6284 -0.9433 35 1 3.7797 5.4084 1.5989 36 1 5.2969 4.7457 2.2933 37 1 5.6502 6.9948 2.9176 38 1 4.5980 7.6207 1.6113 39 1 7.3065 6.4853 -1.8977 40 1 8.5500 6.3710 -0.6292 41 1 7.7525 4.8971 -1.2289 42 1 5.6083 -1.0118 0.5156 43 1 4.5499 -2.4429 0.5159 44 1 7.7354 -3.6908 -0.8478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596893292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:08 Heat of formation + Delta-G solvation = 6.518255 kcal Electronic energy + Delta-G solvation = -26851.331527 eV Core-core repulsion = 22998.416727 eV Total energy + Delta-G solvation = -3852.914800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14330 -40.62363 -39.22013 -36.82856 -34.82866 -33.83303 -33.02251 -32.15856 -31.53376 -29.18995 -28.25121 -26.88360 -26.11640 -25.51852 -23.01071 -22.34785 -21.07815 -19.84517 -19.54502 -19.31991 -17.47715 -16.98687 -16.71972 -16.49755 -16.29454 -15.64876 -15.34720 -14.96880 -14.51715 -14.35004 -14.13410 -14.04969 -13.79112 -13.29536 -13.13765 -12.88501 -12.82805 -12.62395 -12.55665 -12.46576 -12.21757 -12.04027 -11.83987 -11.63438 -11.30114 -11.27602 -11.11353 -10.96711 -10.46375 -10.40444 -10.09099 -9.95674 -9.85231 -9.58821 -9.00766 -8.78766 -7.98525 -7.51597 -6.39678 -4.48425 2.13581 2.34409 2.53835 2.89827 3.03608 3.10098 3.19665 3.25043 3.53240 3.71860 4.05081 4.15246 4.19192 4.36232 4.60282 4.70626 4.88275 4.93855 4.98168 5.06077 5.14516 5.24843 5.30809 5.46510 5.47349 5.51377 5.58400 5.73727 5.83158 5.99121 6.10283 6.11661 6.18175 6.22433 6.35065 6.59178 6.76755 6.82779 6.97900 7.44109 7.51057 7.55268 7.73113 7.81871 7.92932 8.18905 8.55833 8.64797 9.19663 10.67421 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.003567 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.764045 B = 7847.405471 C = 9793.620494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.294 4.294 4 C 0.300 3.700 5 N -0.638 5.638 6 C 0.525 3.475 7 O -0.513 6.513 8 C -0.149 4.149 9 C 0.148 3.852 10 H 0.097 0.903 11 C -0.125 4.125 12 C -0.155 4.155 13 C 0.518 3.482 14 O -0.537 6.537 15 N -0.619 5.619 16 C 0.088 3.912 17 N -0.344 5.344 18 C 0.256 3.744 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.417 0.583 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 15.350 2.942 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.326 4.326 4 C 0.077 3.923 5 N -0.285 5.285 6 C 0.311 3.689 7 O -0.387 6.387 8 C -0.190 4.190 9 C 0.044 3.956 10 H 0.115 0.885 11 C -0.162 4.162 12 C -0.195 4.195 13 C 0.306 3.694 14 O -0.414 6.414 15 N -0.354 5.354 16 C -0.053 4.053 17 N -0.129 5.129 18 C 0.138 3.862 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 N -0.110 5.110 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.360 14.713 2.991 15.198 hybrid contribution 1.139 0.015 -1.110 1.590 sum -1.222 14.727 1.881 14.897 Atomic orbital electron populations 1.20021 0.87591 1.02344 1.02164 1.22038 0.96526 0.91071 1.01831 1.21260 0.89000 1.00433 1.21888 1.17932 0.87993 0.83358 1.02984 1.42782 1.08381 1.05608 1.71750 1.20237 0.91057 0.81348 0.76262 1.90644 1.26678 1.73662 1.47745 1.21957 0.96887 0.94139 1.05986 1.21440 0.87049 0.87636 0.99485 0.88469 1.22711 1.03366 0.95508 0.94661 1.22371 0.97073 0.98943 1.01154 1.20944 0.86841 0.80449 0.81187 1.90720 1.42295 1.35569 1.72823 1.48253 1.25123 1.30794 1.31203 1.21630 0.90797 1.02466 0.90426 1.49365 1.06546 1.02211 1.54816 1.19627 0.77799 0.89793 0.98941 1.21376 1.13259 1.31955 0.91338 0.91658 1.24937 0.95701 0.94848 0.98191 1.69921 1.19115 1.32630 1.31027 0.86307 0.78330 0.78532 0.83588 1.19557 1.20629 1.20488 1.77368 0.86143 1.21840 1.25683 0.91319 0.91559 0.91128 0.82066 0.74646 0.87756 0.87466 0.87951 0.89973 0.87983 0.87668 0.92362 0.90418 0.90694 0.93833 0.92544 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.00 0.38 -0.51 16 2 C 0.05 0.96 7.21 -82.45 -0.59 0.37 16 3 C -0.29 -5.61 9.58 -39.78 -0.38 -5.99 16 4 C 0.30 5.88 7.66 -153.16 -1.17 4.71 16 5 N -0.64 -9.86 5.42 -11.46 -0.06 -9.93 16 6 C 0.53 6.76 7.54 -10.98 -0.08 6.67 16 7 O -0.51 -7.63 12.29 5.55 0.07 -7.57 16 8 C -0.15 -1.30 4.94 -27.88 -0.14 -1.43 16 9 C 0.15 1.28 2.93 -67.01 -0.20 1.09 16 10 H 0.10 0.90 7.80 -51.93 -0.40 0.50 16 11 C -0.12 -0.99 5.93 -25.09 -0.15 -1.14 16 12 C -0.16 -1.24 6.86 -26.74 -0.18 -1.43 16 13 C 0.52 5.83 8.02 -10.86 -0.09 5.74 16 14 O -0.54 -8.12 17.55 5.56 0.10 -8.03 16 15 N -0.62 -5.86 3.18 -172.71 -0.55 -6.41 16 16 C 0.09 0.71 10.74 59.84 0.64 1.35 16 17 N -0.34 -7.71 3.60 -61.57 -0.22 -7.94 16 18 C 0.26 6.16 6.01 -5.19 -0.03 6.13 16 19 C -0.54 -14.06 9.39 -34.44 -0.32 -14.39 16 20 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -23.67 13.29 55.43 0.74 -22.93 16 23 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 N -0.28 -6.42 12.56 33.65 0.42 -5.99 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.16 2.92 5.83 -52.48 -0.31 2.62 16 32 H 0.42 5.95 7.96 -40.82 -0.33 5.63 16 33 H 0.10 0.77 7.98 -51.93 -0.41 0.35 16 34 H 0.11 0.80 6.61 -51.93 -0.34 0.46 16 35 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 36 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.67 7.86 -51.93 -0.41 0.27 16 41 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 42 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -32.86 368.13 -7.64 -40.50 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.24 Total: 4.85 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.42 Total: 2.82 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.33 Total: -53.20 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.17 Total: -15.59 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.86 -7.64 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596893292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.014 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds