Wall clock time and date at job start Tue Mar 31 2020 13:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39754 * 125.83379 * 2 1 4 4 C 1.36109 * 107.82914 * 179.97438 * 3 2 1 5 5 N 1.39476 * 126.22085 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99727 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99769 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.46859 * 186.43731 * 8 6 5 10 10 H 1.08998 * 110.21894 * 307.46535 * 9 8 6 11 11 C 1.54485 * 110.24691 * 69.48416 * 9 8 6 12 12 C 1.54635 * 101.76379 * 144.41245 * 11 9 8 13 13 C 1.51281 * 104.19730 * 335.20468 * 12 11 9 14 14 O 1.21279 * 124.94114 * 196.23162 * 13 12 11 15 15 N 1.34423 * 110.11720 * 16.25243 * 13 12 11 16 16 C 1.46492 * 124.35102 * 180.43082 * 15 13 12 17 17 N 1.35262 * 107.56542 * 359.97438 * 4 3 2 18 18 C 1.46502 * 126.04859 * 179.97438 * 17 4 3 19 19 C 1.50704 * 109.46865 * 270.02522 * 18 17 4 20 20 H 1.07999 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00212 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47495 * 120.00222 * 23 21 19 26 26 H 1.48504 * 109.47072 * 240.00506 * 23 21 19 27 27 N 1.30846 * 125.84108 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47229 * 90.00093 * 1 2 3 29 29 H 1.08998 * 109.46927 * 209.99762 * 1 2 3 30 30 H 1.09003 * 109.47384 * 329.99751 * 1 2 3 31 31 H 1.08005 * 126.09026 * 359.71910 * 3 2 1 32 32 H 0.96995 * 119.99909 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.46751 * 306.43334 * 8 6 5 34 34 H 1.08997 * 109.47091 * 66.43861 * 8 6 5 35 35 H 1.08996 * 110.96929 * 262.53364 * 11 9 8 36 36 H 1.09000 * 110.96485 * 26.29585 * 11 9 8 37 37 H 1.08994 * 110.48331 * 216.52372 * 12 11 9 38 38 H 1.09002 * 110.59391 * 93.94164 * 12 11 9 39 39 H 1.09003 * 109.46852 * 266.76596 * 16 15 13 40 40 H 1.08993 * 109.47298 * 26.76334 * 16 15 13 41 41 H 1.09001 * 109.47150 * 146.76321 * 16 15 13 42 42 H 1.08995 * 109.46959 * 30.02806 * 18 17 4 43 43 H 1.08999 * 109.46879 * 150.03060 * 18 17 4 44 44 H 0.97001 * 120.00533 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 0.0006 5 7 4.7512 1.5277 0.0003 6 6 4.6155 2.8686 -0.0002 7 8 3.5094 3.3662 0.0002 8 6 5.8382 3.7496 -0.0011 9 6 5.4140 5.2107 0.1603 10 1 4.6597 5.4682 -0.5831 11 6 4.8686 5.4548 1.5849 12 6 5.3651 6.8911 1.8708 13 6 6.5732 7.0513 0.9745 14 8 7.4145 7.9170 1.0910 15 7 6.5782 6.0949 0.0300 16 6 7.6130 5.9530 -0.9972 17 7 3.6092 -0.6403 0.0015 18 6 4.7871 -1.5114 0.0018 19 6 5.1909 -1.8106 -1.4189 20 1 4.6270 -1.3932 -2.2400 21 6 6.2811 -2.6163 -1.6706 22 7 6.9682 -3.1242 -0.6708 23 14 6.7822 -2.9866 -3.4316 24 1 5.8540 -2.2997 -4.3652 25 1 8.1664 -2.5020 -3.6647 26 1 6.7250 -4.4521 -3.6648 27 7 2.2731 -1.0607 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9900 2.1598 -0.0043 32 1 5.6357 1.1297 0.0004 33 1 6.4901 3.4671 0.8255 34 1 6.3727 3.6284 -0.9433 35 1 3.7797 5.4084 1.5989 36 1 5.2969 4.7457 2.2933 37 1 5.6502 6.9948 2.9176 38 1 4.5980 7.6207 1.6113 39 1 7.3065 6.4853 -1.8977 40 1 8.5500 6.3710 -0.6292 41 1 7.7525 4.8971 -1.2289 42 1 5.6083 -1.0118 0.5156 43 1 4.5499 -2.4429 0.5159 44 1 7.7354 -3.6908 -0.8478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596893292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:08 Heat of formation + Delta-G solvation = -14.702544 kcal Electronic energy + Delta-G solvation = -26852.251730 eV Core-core repulsion = 22998.416727 eV Total energy + Delta-G solvation = -3853.835003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42417 -41.61769 -40.38678 -37.74971 -36.21833 -35.56021 -33.81520 -33.69489 -32.44728 -30.69926 -29.67658 -27.79298 -27.54826 -26.40278 -24.73234 -23.34267 -22.13761 -21.20810 -20.60591 -20.33595 -18.88310 -18.47815 -18.09046 -17.44763 -17.31163 -16.77556 -16.57409 -16.16856 -15.99823 -15.74337 -15.24190 -14.81584 -14.69825 -14.54673 -14.40433 -14.14405 -13.99636 -13.87931 -13.56163 -13.35607 -13.30855 -13.14427 -13.08534 -12.88662 -12.79550 -12.71064 -12.31038 -11.97896 -11.94451 -11.85871 -11.64608 -11.41818 -10.94513 -10.82031 -10.76039 -9.79204 -9.59974 -9.01387 -8.36195 -6.53488 0.84269 1.33675 1.35306 1.39652 1.50120 1.53712 1.68091 1.96540 2.11460 2.27736 2.38934 2.94521 3.29260 3.45262 3.65353 3.68116 3.88139 4.04723 4.19532 4.30501 4.34831 4.42205 4.49171 4.60604 4.65797 4.76017 4.80588 4.86150 4.87946 4.89929 4.92472 4.95701 5.01040 5.12520 5.18741 5.25478 5.28214 5.48808 5.51941 5.77943 6.00471 6.04974 6.20792 6.32429 6.58850 6.99392 7.08325 7.10698 7.19133 8.70161 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.003567 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.764045 B = 7847.405471 C = 9793.620494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.056 3.944 3 C -0.304 4.304 4 C 0.300 3.700 5 N -0.640 5.640 6 C 0.529 3.471 7 O -0.529 6.529 8 C -0.138 4.138 9 C 0.150 3.850 10 H 0.095 0.905 11 C -0.121 4.121 12 C -0.147 4.147 13 C 0.508 3.492 14 O -0.584 6.584 15 N -0.615 5.615 16 C 0.081 3.919 17 N -0.369 5.369 18 C 0.272 3.728 19 C -0.554 4.554 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.914 5.914 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.265 1.265 26 H -0.278 1.278 27 N -0.336 5.336 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.421 0.579 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 16.257 2.325 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.336 4.336 4 C 0.078 3.922 5 N -0.288 5.288 6 C 0.317 3.683 7 O -0.404 6.404 8 C -0.178 4.178 9 C 0.046 3.954 10 H 0.113 0.887 11 C -0.158 4.158 12 C -0.187 4.187 13 C 0.298 3.702 14 O -0.465 6.465 15 N -0.348 5.348 16 C -0.060 4.060 17 N -0.154 5.154 18 C 0.154 3.846 19 C -0.592 4.592 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.189 1.189 26 H -0.204 1.204 27 N -0.161 5.161 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.191 0.809 32 H 0.259 0.741 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.514 15.626 2.370 16.003 hybrid contribution 1.115 -0.211 -0.914 1.457 sum -1.398 15.415 1.456 15.546 Atomic orbital electron populations 1.20218 0.84129 1.04016 1.03592 1.22890 0.98664 0.90285 0.99053 1.21501 0.88836 1.00858 1.22364 1.18352 0.89714 0.82693 1.01469 1.43024 1.07477 1.06144 1.72177 1.20953 0.92120 0.80487 0.74735 1.90626 1.27940 1.73645 1.48219 1.21963 0.95059 0.92898 1.07886 1.21444 0.86638 0.87343 0.99992 0.88723 1.22711 1.03378 0.95521 0.94238 1.22382 0.95914 0.99331 1.01069 1.21486 0.87082 0.79972 0.81707 1.90693 1.44161 1.37446 1.74157 1.48345 1.25310 1.30238 1.30869 1.21790 0.90082 1.03922 0.90212 1.49153 1.06195 1.03087 1.56979 1.19204 0.78726 0.89026 0.97692 1.21436 1.13512 1.32558 0.91687 0.93457 1.25653 0.95457 0.94343 1.01864 1.69991 1.19485 1.32907 1.32794 0.85362 0.78440 0.78115 0.78875 1.20056 1.18937 1.20376 1.77316 0.86565 1.23832 1.28416 0.89854 0.90934 0.88415 0.80891 0.74112 0.85754 0.85535 0.87874 0.89377 0.86973 0.86328 0.91719 0.91395 0.88548 0.93192 0.95783 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.44 71.24 0.74 -0.86 16 2 C 0.06 2.12 7.21 43.07 0.31 2.43 16 3 C -0.30 -11.31 9.58 22.14 0.21 -11.10 16 4 C 0.30 11.70 7.66 131.32 1.01 12.71 16 5 N -0.64 -19.07 5.42 -308.56 -1.67 -20.74 16 6 C 0.53 12.53 7.54 87.66 0.66 13.19 16 7 O -0.53 -14.69 12.29 -3.07 -0.04 -14.73 16 8 C -0.14 -2.00 4.94 29.85 0.15 -1.86 16 9 C 0.15 2.23 2.93 45.44 0.13 2.37 16 10 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 11 C -0.12 -1.63 5.93 31.66 0.19 -1.44 16 12 C -0.15 -2.07 6.86 30.59 0.21 -1.86 16 13 C 0.51 10.86 8.02 87.90 0.71 11.57 16 14 O -0.58 -17.60 17.55 -3.03 -0.05 -17.66 16 15 N -0.61 -10.49 3.18 -818.91 -2.61 -13.09 16 16 C 0.08 1.15 10.74 127.77 1.37 2.52 16 17 N -0.37 -16.85 3.60 -348.71 -1.26 -18.10 16 18 C 0.27 13.48 6.01 85.63 0.51 14.00 16 19 C -0.55 -29.24 9.39 25.60 0.24 -29.00 16 20 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 21 C 0.03 1.47 5.46 84.65 0.46 1.93 16 22 N -0.91 -48.64 13.29 21.45 0.28 -48.35 16 23 Si 0.97 40.82 29.54 68.60 2.03 42.85 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 N -0.34 -15.38 12.56 -47.45 -0.60 -15.98 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.17 5.98 5.83 -2.91 -0.02 5.96 16 32 H 0.42 11.62 7.96 -92.71 -0.74 10.88 16 33 H 0.12 1.41 7.98 -2.39 -0.02 1.39 16 34 H 0.13 1.44 6.61 -2.39 -0.02 1.42 16 35 H 0.10 1.44 7.88 -2.39 -0.02 1.42 16 36 H 0.09 1.11 7.80 -2.39 -0.02 1.09 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 41 H 0.10 0.93 6.32 -2.39 -0.02 0.91 16 42 H 0.05 2.35 7.50 -2.39 -0.02 2.34 16 43 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -72.17 368.13 3.29 -68.88 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.29 Total: 22.34 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.91 Total: 14.59 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.85 Total: -116.27 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.09 Total: -32.39 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -72.17 3.29 -68.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596893292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.177 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds