Wall clock time and date at job start Tue Mar 31 2020 13:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39758 * 125.83667 * 2 1 4 4 C 1.36112 * 107.82903 * 179.97438 * 3 2 1 5 5 N 1.39470 * 126.21918 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99995 * 0.02562 * 5 4 3 7 7 O 1.21291 * 119.99353 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00315 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47103 * 174.20933 * 8 6 5 10 10 H 1.09005 * 110.28596 * 52.54751 * 9 8 6 11 11 C 1.54476 * 110.24695 * 290.56474 * 9 8 6 12 12 C 1.54634 * 101.76620 * 215.58308 * 11 9 8 13 13 C 1.51285 * 104.19194 * 24.80039 * 12 11 9 14 14 O 1.21285 * 124.93853 * 163.78042 * 13 12 11 15 15 N 1.34417 * 110.11832 * 343.74677 * 13 12 11 16 16 C 1.46495 * 124.35282 * 179.57488 * 15 13 12 17 17 N 1.35265 * 107.56589 * 0.26322 * 4 3 2 18 18 C 1.46496 * 126.04654 * 179.73733 * 17 4 3 19 19 C 1.50696 * 109.47250 * 89.99865 * 18 17 4 20 20 H 1.08003 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00161 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00306 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99899 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47238 * 89.99811 * 23 21 19 25 25 H 1.48501 * 109.46898 * 209.99979 * 23 21 19 26 26 H 1.48502 * 109.47213 * 329.99642 * 23 21 19 27 27 N 1.30850 * 125.84129 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46885 * 90.00312 * 1 2 3 29 29 H 1.09002 * 109.46809 * 209.99937 * 1 2 3 30 30 H 1.09004 * 109.47506 * 329.99719 * 1 2 3 31 31 H 1.08003 * 126.08535 * 359.95001 * 3 2 1 32 32 H 0.96996 * 120.00593 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46867 * 54.20708 * 8 6 5 34 34 H 1.09003 * 109.46714 * 294.21172 * 8 6 5 35 35 H 1.09004 * 110.96845 * 97.46906 * 11 9 8 36 36 H 1.08998 * 110.96854 * 333.70580 * 11 9 8 37 37 H 1.08999 * 110.48552 * 266.12032 * 12 11 9 38 38 H 1.09007 * 110.48349 * 143.47477 * 12 11 9 39 39 H 1.09005 * 109.46749 * 5.09911 * 16 15 13 40 40 H 1.08997 * 109.47285 * 125.09601 * 16 15 13 41 41 H 1.09001 * 109.47389 * 245.10469 * 16 15 13 42 42 H 1.09003 * 109.47311 * 210.00600 * 18 17 4 43 43 H 1.09003 * 109.47130 * 329.99788 * 18 17 4 44 44 H 0.96999 * 120.00331 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 0.0006 5 7 4.7512 1.5275 0.0013 6 6 4.6157 2.8685 0.0020 7 8 3.5095 3.3661 0.0024 8 6 5.8383 3.7495 0.0021 9 6 5.4130 5.2120 -0.1426 10 1 4.6641 5.4640 0.6083 11 6 4.8561 5.4690 -1.5604 12 6 5.3503 6.9078 -1.8373 13 6 6.5657 7.0598 -0.9494 14 8 7.4061 7.9267 -1.0648 15 7 6.5784 6.0949 -0.0137 16 6 7.6215 5.9436 1.0037 17 7 3.6092 -0.6404 -0.0050 18 6 4.7870 -1.5115 -0.0119 19 6 5.1949 -1.8161 1.4065 20 1 4.6328 -1.4025 2.2307 21 6 6.2851 -2.6236 1.6520 22 7 6.6408 -2.8898 2.8898 23 14 7.2571 -3.3396 0.2264 24 1 8.3476 -2.4039 -0.1487 25 1 7.8410 -4.6437 0.6309 26 1 6.3553 -3.5404 -0.9362 27 7 2.2732 -1.0607 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9901 2.1597 -0.0008 32 1 5.6358 1.1296 0.0013 33 1 6.4842 3.4747 -0.8317 34 1 6.3796 3.6195 0.9393 35 1 3.7670 5.4229 -1.5659 36 1 5.2785 4.7664 -2.2787 37 1 4.5845 7.6336 -1.5634 38 1 5.6270 7.0210 -2.8856 39 1 8.3195 6.7781 0.9352 40 1 7.1648 5.9322 1.9933 41 1 8.1564 5.0082 0.8394 42 1 4.5485 -2.4409 -0.5290 43 1 5.6070 -1.0099 -0.5260 44 1 7.4080 -3.4576 3.0626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596893293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:11 Heat of formation + Delta-G solvation = 11.681817 kcal Electronic energy + Delta-G solvation = -26886.491324 eV Core-core repulsion = 23033.800432 eV Total energy + Delta-G solvation = -3852.690891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19493 -40.67343 -39.27430 -36.84454 -34.89755 -33.83618 -33.03594 -32.25149 -31.56646 -29.55804 -28.34444 -26.88516 -26.39580 -25.55560 -22.78411 -22.23995 -21.11823 -19.88887 -19.57065 -19.38468 -17.50949 -17.26633 -16.89653 -16.56774 -16.33998 -15.68547 -15.34265 -14.95962 -14.64988 -14.24258 -14.15927 -14.05663 -13.78456 -13.37046 -13.17483 -13.08519 -12.77598 -12.72892 -12.62063 -12.47974 -12.36978 -12.18506 -11.95729 -11.88979 -11.33320 -11.29631 -11.20221 -10.89751 -10.57462 -10.30395 -10.14244 -9.99087 -9.82690 -9.64494 -9.02061 -8.92595 -8.03892 -7.57942 -6.39593 -4.44550 2.08016 2.32116 2.49413 2.83853 2.97315 3.01512 3.12053 3.13706 3.47093 3.60453 4.02868 4.08407 4.14476 4.34255 4.56053 4.70013 4.86371 4.86780 4.95809 5.05477 5.16556 5.23346 5.24327 5.44176 5.44886 5.50089 5.53477 5.71034 5.81027 5.94275 5.96627 6.05025 6.13447 6.19216 6.24286 6.29524 6.55169 6.67450 6.81396 7.13632 7.35871 7.44422 7.66279 7.91151 8.06586 8.20961 8.49520 8.66325 9.14873 10.72537 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003617 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.194257 B = 7738.304161 C = 9597.285251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.291 4.291 4 C 0.303 3.697 5 N -0.640 5.640 6 C 0.526 3.474 7 O -0.511 6.511 8 C -0.148 4.148 9 C 0.148 3.852 10 H 0.098 0.902 11 C -0.125 4.125 12 C -0.155 4.155 13 C 0.518 3.482 14 O -0.538 6.538 15 N -0.619 5.619 16 C 0.087 3.913 17 N -0.344 5.344 18 C 0.230 3.770 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.081 3.919 22 N -0.882 5.882 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.282 5.282 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.416 0.584 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 15.145 -8.023 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.323 4.323 4 C 0.081 3.919 5 N -0.286 5.286 6 C 0.312 3.688 7 O -0.385 6.385 8 C -0.188 4.188 9 C 0.044 3.956 10 H 0.116 0.884 11 C -0.163 4.163 12 C -0.195 4.195 13 C 0.306 3.694 14 O -0.415 6.415 15 N -0.353 5.353 16 C -0.055 4.055 17 N -0.129 5.129 18 C 0.111 3.889 19 C -0.585 4.585 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.518 5.518 23 Si 0.697 3.303 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.107 5.107 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.181 0.819 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.914 14.524 -7.892 16.640 hybrid contribution 1.396 -0.175 -0.325 1.444 sum -0.518 14.349 -8.217 16.544 Atomic orbital electron populations 1.20038 0.87403 1.02648 1.02106 1.22068 0.96604 0.90990 1.01404 1.21278 0.88906 1.00520 1.21554 1.17917 0.88104 0.83078 1.02776 1.42784 1.08251 1.05687 1.71911 1.20263 0.91125 0.81277 0.76156 1.90645 1.26683 1.73620 1.47600 1.21937 0.96769 0.94092 1.06044 1.21440 0.86944 0.87649 0.99548 0.88430 1.22713 1.03334 0.95449 0.94768 1.22378 0.96990 0.98943 1.01229 1.20949 0.86902 0.80428 0.81134 1.90722 1.42651 1.35819 1.72281 1.48248 1.24791 1.30323 1.31985 1.21629 0.90392 1.02943 0.90515 1.48913 1.06218 1.02033 1.55691 1.19932 0.79239 0.90062 0.99695 1.21187 1.14252 1.32736 0.90348 0.90063 1.24821 0.96622 0.95156 0.95806 1.69865 1.26701 1.36430 1.18852 0.86930 0.80738 0.79788 0.82860 1.19664 1.20303 1.18748 1.77382 0.85780 1.21784 1.25754 0.91291 0.91390 0.90994 0.81872 0.74794 0.87834 0.87395 0.87929 0.90042 0.87641 0.87993 0.89862 0.91534 0.91823 0.92736 0.94775 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.00 0.38 -0.50 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -5.44 9.58 -39.78 -0.38 -5.82 16 4 C 0.30 5.83 7.66 -153.16 -1.17 4.65 16 5 N -0.64 -9.65 5.42 -11.46 -0.06 -9.71 16 6 C 0.53 6.64 7.54 -10.98 -0.08 6.56 16 7 O -0.51 -7.48 12.26 5.55 0.07 -7.41 16 8 C -0.15 -1.26 4.95 -27.89 -0.14 -1.40 16 9 C 0.15 1.26 2.93 -67.01 -0.20 1.07 16 10 H 0.10 0.89 7.81 -51.93 -0.41 0.49 16 11 C -0.12 -0.96 5.92 -25.10 -0.15 -1.11 16 12 C -0.16 -1.21 6.86 -26.74 -0.18 -1.39 16 13 C 0.52 5.73 8.02 -10.86 -0.09 5.64 16 14 O -0.54 -8.02 17.36 5.55 0.10 -7.93 16 15 N -0.62 -5.77 3.18 -172.70 -0.55 -6.32 16 16 C 0.09 0.69 10.20 59.84 0.61 1.30 16 17 N -0.34 -7.51 3.60 -61.57 -0.22 -7.73 16 18 C 0.23 5.17 5.07 -5.20 -0.03 5.14 16 19 C -0.55 -14.47 9.94 -34.44 -0.34 -14.81 16 20 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.88 -25.05 13.96 55.43 0.77 -24.27 16 23 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 27 N -0.28 -6.22 12.56 33.65 0.42 -5.80 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.16 2.89 5.83 -52.48 -0.31 2.59 16 32 H 0.42 5.66 7.97 -40.82 -0.33 5.33 16 33 H 0.10 0.73 7.99 -51.93 -0.41 0.31 16 34 H 0.11 0.82 7.30 -51.93 -0.38 0.44 16 35 H 0.10 0.81 7.86 -51.93 -0.41 0.40 16 36 H 0.08 0.59 7.80 -51.93 -0.41 0.18 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.73 7.55 -51.93 -0.39 0.34 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 42 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 43 H 0.03 0.68 6.93 -51.93 -0.36 0.32 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -34.19 365.54 -7.39 -41.58 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.30 Total: 5.99 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.46 Total: 1.80 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.36 Total: -53.82 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.34 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.19 -7.39 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596893293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.263 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds