Wall clock time and date at job start Tue Mar 31 2020 13:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39758 * 125.83667 * 2 1 4 4 C 1.36112 * 107.82903 * 179.97438 * 3 2 1 5 5 N 1.39470 * 126.21918 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99995 * 0.02562 * 5 4 3 7 7 O 1.21291 * 119.99353 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00315 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47103 * 174.20933 * 8 6 5 10 10 H 1.09005 * 110.28596 * 52.54751 * 9 8 6 11 11 C 1.54476 * 110.24695 * 290.56474 * 9 8 6 12 12 C 1.54634 * 101.76620 * 215.58308 * 11 9 8 13 13 C 1.51285 * 104.19194 * 24.80039 * 12 11 9 14 14 O 1.21285 * 124.93853 * 163.78042 * 13 12 11 15 15 N 1.34417 * 110.11832 * 343.74677 * 13 12 11 16 16 C 1.46495 * 124.35282 * 179.57488 * 15 13 12 17 17 N 1.35265 * 107.56589 * 0.26322 * 4 3 2 18 18 C 1.46496 * 126.04654 * 179.73733 * 17 4 3 19 19 C 1.50696 * 109.47250 * 89.99865 * 18 17 4 20 20 H 1.08003 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00161 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00306 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99899 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47238 * 89.99811 * 23 21 19 25 25 H 1.48501 * 109.46898 * 209.99979 * 23 21 19 26 26 H 1.48502 * 109.47213 * 329.99642 * 23 21 19 27 27 N 1.30850 * 125.84129 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46885 * 90.00312 * 1 2 3 29 29 H 1.09002 * 109.46809 * 209.99937 * 1 2 3 30 30 H 1.09004 * 109.47506 * 329.99719 * 1 2 3 31 31 H 1.08003 * 126.08535 * 359.95001 * 3 2 1 32 32 H 0.96996 * 120.00593 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46867 * 54.20708 * 8 6 5 34 34 H 1.09003 * 109.46714 * 294.21172 * 8 6 5 35 35 H 1.09004 * 110.96845 * 97.46906 * 11 9 8 36 36 H 1.08998 * 110.96854 * 333.70580 * 11 9 8 37 37 H 1.08999 * 110.48552 * 266.12032 * 12 11 9 38 38 H 1.09007 * 110.48349 * 143.47477 * 12 11 9 39 39 H 1.09005 * 109.46749 * 5.09911 * 16 15 13 40 40 H 1.08997 * 109.47285 * 125.09601 * 16 15 13 41 41 H 1.09001 * 109.47389 * 245.10469 * 16 15 13 42 42 H 1.09003 * 109.47311 * 210.00600 * 18 17 4 43 43 H 1.09003 * 109.47130 * 329.99788 * 18 17 4 44 44 H 0.96999 * 120.00331 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 0.0006 5 7 4.7512 1.5275 0.0013 6 6 4.6157 2.8685 0.0020 7 8 3.5095 3.3661 0.0024 8 6 5.8383 3.7495 0.0021 9 6 5.4130 5.2120 -0.1426 10 1 4.6641 5.4640 0.6083 11 6 4.8561 5.4690 -1.5604 12 6 5.3503 6.9078 -1.8373 13 6 6.5657 7.0598 -0.9494 14 8 7.4061 7.9267 -1.0648 15 7 6.5784 6.0949 -0.0137 16 6 7.6215 5.9436 1.0037 17 7 3.6092 -0.6404 -0.0050 18 6 4.7870 -1.5115 -0.0119 19 6 5.1949 -1.8161 1.4065 20 1 4.6328 -1.4025 2.2307 21 6 6.2851 -2.6236 1.6520 22 7 6.6408 -2.8898 2.8898 23 14 7.2571 -3.3396 0.2264 24 1 8.3476 -2.4039 -0.1487 25 1 7.8410 -4.6437 0.6309 26 1 6.3553 -3.5404 -0.9362 27 7 2.2732 -1.0607 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9901 2.1597 -0.0008 32 1 5.6358 1.1296 0.0013 33 1 6.4842 3.4747 -0.8317 34 1 6.3796 3.6195 0.9393 35 1 3.7670 5.4229 -1.5659 36 1 5.2785 4.7664 -2.2787 37 1 4.5845 7.6336 -1.5634 38 1 5.6270 7.0210 -2.8856 39 1 8.3195 6.7781 0.9352 40 1 7.1648 5.9322 1.9933 41 1 8.1564 5.0082 0.8394 42 1 4.5485 -2.4409 -0.5290 43 1 5.6070 -1.0099 -0.5260 44 1 7.4080 -3.4576 3.0626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596893293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:10 Heat of formation + Delta-G solvation = -11.972153 kcal Electronic energy + Delta-G solvation = -26887.517037 eV Core-core repulsion = 23033.800432 eV Total energy + Delta-G solvation = -3853.716605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46011 -41.62264 -40.40636 -37.74504 -36.24237 -35.52789 -33.97002 -33.69515 -32.45609 -31.05580 -29.72547 -27.99541 -27.54017 -26.40866 -24.37809 -23.30608 -22.15879 -21.22747 -20.63886 -20.34048 -19.25592 -18.56065 -18.13457 -17.45584 -17.33274 -16.81974 -16.46582 -16.15571 -16.07076 -15.58047 -15.27218 -14.85785 -14.77869 -14.70336 -14.40689 -14.17152 -14.12301 -13.86923 -13.70209 -13.47669 -13.33781 -13.12850 -13.11011 -12.92549 -12.84597 -12.53797 -12.11565 -11.97266 -11.93204 -11.85792 -11.72265 -11.44951 -10.97583 -10.91123 -10.82358 -9.78629 -9.59023 -9.03552 -8.42139 -6.54704 0.80716 1.28180 1.32974 1.39493 1.47611 1.52949 1.65810 1.95181 2.08909 2.24930 2.30611 2.89697 3.29218 3.46267 3.63861 3.68903 3.81990 4.05774 4.18577 4.25607 4.35422 4.40324 4.47448 4.56898 4.58656 4.61178 4.70629 4.80408 4.87589 4.89196 4.91890 4.93197 4.98836 5.12654 5.15762 5.19115 5.21518 5.26041 5.48525 5.88873 6.02049 6.05234 6.23576 6.36016 6.50225 6.96059 7.04005 7.10480 7.11054 8.74138 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003617 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.194257 B = 7738.304161 C = 9597.285251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.303 4.303 4 C 0.303 3.697 5 N -0.641 5.641 6 C 0.529 3.471 7 O -0.529 6.529 8 C -0.136 4.136 9 C 0.149 3.851 10 H 0.093 0.907 11 C -0.120 4.120 12 C -0.147 4.147 13 C 0.508 3.492 14 O -0.584 6.584 15 N -0.615 5.615 16 C 0.080 3.920 17 N -0.368 5.368 18 C 0.239 3.761 19 C -0.553 4.553 20 H 0.023 0.977 21 C 0.026 3.974 22 N -0.934 5.934 23 Si 0.948 3.052 24 H -0.244 1.244 25 H -0.282 1.282 26 H -0.248 1.248 27 N -0.333 5.333 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.422 0.578 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 15.706 -10.075 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C -0.335 4.335 4 C 0.081 3.919 5 N -0.289 5.289 6 C 0.317 3.683 7 O -0.404 6.404 8 C -0.177 4.177 9 C 0.045 3.955 10 H 0.111 0.889 11 C -0.158 4.158 12 C -0.187 4.187 13 C 0.298 3.702 14 O -0.465 6.465 15 N -0.348 5.348 16 C -0.062 4.062 17 N -0.154 5.154 18 C 0.119 3.881 19 C -0.591 4.591 20 H 0.041 0.959 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.769 3.231 24 H -0.167 1.167 25 H -0.208 1.208 26 H -0.171 1.171 27 N -0.158 5.158 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.558 15.106 -9.938 18.149 hybrid contribution 1.166 -0.266 0.444 1.276 sum -0.392 14.840 -9.494 17.621 Atomic orbital electron populations 1.20230 0.84100 1.03760 1.03953 1.22897 0.98694 0.90280 0.98796 1.21518 0.88896 1.00906 1.22130 1.18330 0.89767 0.82593 1.01256 1.43013 1.07440 1.06162 1.72265 1.20981 0.92153 0.80506 0.74679 1.90629 1.27972 1.73646 1.48109 1.21942 0.94994 0.92842 1.07892 1.21445 0.86489 0.87402 1.00127 0.88936 1.22712 1.03323 0.95462 0.94262 1.22389 0.95735 0.99363 1.01197 1.21500 0.87182 0.79937 0.81611 1.90695 1.44525 1.37666 1.73639 1.48341 1.24967 1.29840 1.31615 1.21779 0.90225 1.03295 0.90852 1.48815 1.06012 1.02915 1.57610 1.19723 0.80644 0.90731 0.97011 1.21226 1.13933 1.32887 0.91051 0.95904 1.25806 0.97612 0.95107 0.98942 1.70030 1.27751 1.37637 1.21807 0.85725 0.79553 0.78906 0.78935 1.16724 1.20756 1.17119 1.77319 0.86379 1.23698 1.28405 0.88951 0.91300 0.88816 0.80847 0.74027 0.85402 0.85892 0.87892 0.89158 0.86413 0.86872 0.91115 0.90326 0.90104 0.93318 0.91363 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.44 71.24 0.74 -0.86 16 2 C 0.06 2.18 7.21 43.07 0.31 2.49 16 3 C -0.30 -11.08 9.58 22.14 0.21 -10.86 16 4 C 0.30 11.44 7.66 131.32 1.01 12.45 16 5 N -0.64 -18.30 5.42 -308.55 -1.67 -19.97 16 6 C 0.53 12.20 7.54 87.66 0.66 12.86 16 7 O -0.53 -14.46 12.26 -3.06 -0.04 -14.49 16 8 C -0.14 -1.92 4.95 29.85 0.15 -1.77 16 9 C 0.15 2.18 2.93 45.44 0.13 2.31 16 10 H 0.09 1.50 7.81 -2.38 -0.02 1.48 16 11 C -0.12 -1.52 5.92 31.65 0.19 -1.33 16 12 C -0.15 -1.98 6.86 30.59 0.21 -1.77 16 13 C 0.51 10.62 8.02 87.90 0.71 11.32 16 14 O -0.58 -17.35 17.36 -3.05 -0.05 -17.40 16 15 N -0.61 -10.30 3.18 -818.90 -2.61 -12.91 16 16 C 0.08 1.13 10.20 127.77 1.30 2.44 16 17 N -0.37 -16.13 3.60 -348.72 -1.26 -17.38 16 18 C 0.24 10.62 5.07 85.63 0.43 11.06 16 19 C -0.55 -29.97 9.94 25.60 0.25 -29.72 16 20 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 21 C 0.03 1.36 5.47 84.65 0.46 1.83 16 22 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 23 Si 0.95 38.11 27.47 68.60 1.88 39.99 16 24 H -0.24 -8.71 7.11 99.48 0.71 -8.01 16 25 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.25 -9.29 6.54 99.48 0.65 -8.64 16 27 N -0.33 -14.85 12.56 -47.45 -0.60 -15.44 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.17 5.91 5.83 -2.91 -0.02 5.89 16 32 H 0.42 10.67 7.97 -92.71 -0.74 9.93 16 33 H 0.13 1.27 7.99 -2.39 -0.02 1.25 16 34 H 0.12 1.46 7.30 -2.39 -0.02 1.44 16 35 H 0.10 1.36 7.86 -2.38 -0.02 1.34 16 36 H 0.09 1.01 7.80 -2.39 -0.02 0.99 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.07 1.21 7.55 -2.38 -0.02 1.19 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.87 7.71 -2.39 -0.02 0.86 16 42 H 0.05 2.21 7.20 -2.39 -0.02 2.19 16 43 H 0.07 2.55 6.93 -2.39 -0.02 2.53 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -78.03 365.54 2.97 -75.06 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.24 Total: 26.17 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.77 Total: 10.44 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.83 Total: -119.76 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.09 Total: -31.90 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.88 Total: 39.99 kcal Total: -78.03 2.97 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596893293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.091 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds