Wall clock time and date at job start Tue Mar 31 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46483 * 240.00078 * 3 2 1 5 5 H 1.48501 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47232 * 119.99965 * 3 2 1 7 7 C 1.38805 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99898 * 163.07212 * 7 2 1 9 9 N 1.36942 * 120.00378 * 343.07534 * 7 2 1 10 10 C 1.46923 * 120.62360 * 331.83486 * 9 7 2 11 11 C 1.53199 * 108.77504 * 233.62829 * 10 9 7 12 12 C 1.53037 * 109.30869 * 305.36851 * 11 10 9 13 13 C 1.53008 * 109.45626 * 181.38168 * 12 11 10 14 14 N 1.46503 * 109.46845 * 174.97064 * 13 12 11 15 15 C 1.34774 * 119.99738 * 180.02562 * 14 13 12 16 16 O 1.21489 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.48248 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31789 * 126.64039 * 180.02562 * 17 15 14 19 19 C 1.34117 * 105.61342 * 179.97438 * 18 17 15 20 20 C 1.50702 * 126.19361 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49662 * 188.62310 * 20 19 18 22 22 C 1.53000 * 117.49554 * 120.00259 * 20 19 18 23 23 N 1.30094 * 107.61253 * 359.97438 * 19 18 17 24 24 O 1.21305 * 110.38638 * 359.72960 * 23 19 18 25 25 C 1.53042 * 109.52750 * 61.37293 * 12 11 10 26 26 C 1.46917 * 120.63341 * 151.85668 * 9 7 2 27 27 H 0.96998 * 120.00588 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58828 * 113.84679 * 10 9 7 29 29 H 1.08999 * 109.71250 * 353.48659 * 10 9 7 30 30 H 1.08990 * 109.49649 * 185.41708 * 11 10 9 31 31 H 1.09002 * 109.49644 * 65.31793 * 11 10 9 32 32 H 1.08999 * 109.46682 * 301.35556 * 12 11 10 33 33 H 1.08991 * 109.47127 * 294.97331 * 13 12 11 34 34 H 1.08999 * 109.46537 * 54.97699 * 13 12 11 35 35 H 0.97004 * 120.00292 * 0.02562 * 14 13 12 36 36 H 1.08993 * 115.54994 * 334.33150 * 20 19 18 37 37 H 1.08997 * 117.50181 * 0.02562 * 21 20 19 38 38 H 1.09003 * 117.49399 * 145.02358 * 21 20 19 39 39 H 1.08999 * 117.49425 * 214.98234 * 22 20 19 40 40 H 1.08996 * 117.49983 * 359.97438 * 22 20 19 41 41 H 1.08999 * 109.49804 * 58.57778 * 25 12 11 42 42 H 1.09005 * 109.49685 * 178.67457 * 25 12 11 43 43 H 1.08997 * 109.58818 * 246.16011 * 26 9 7 44 44 H 1.09005 * 109.58899 * 6.43776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3623 0.3463 10 6 0.2263 -2.3399 1.2681 11 6 0.4983 -3.3182 2.4152 12 6 0.8134 -4.7000 1.8378 13 6 1.0518 -5.6880 2.9816 14 7 1.2346 -7.0344 2.4336 15 6 1.4596 -8.0739 3.2613 16 8 1.5104 -7.8946 4.4619 17 6 1.6452 -9.4362 2.7069 18 7 1.8706 -10.5398 3.3910 19 6 1.9690 -11.5170 2.4777 20 6 2.2258 -12.9752 2.7586 21 6 2.5012 -13.8873 1.5615 22 6 1.1658 -13.9798 2.3025 23 7 1.8025 -10.9782 1.3053 24 8 1.6095 -9.7854 1.4120 25 6 2.0688 -4.6162 0.9665 26 6 1.8144 -3.6529 -0.1971 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6767 -2.6412 0.7374 29 1 0.0965 -1.3344 1.6685 30 1 -0.3821 -3.3831 3.0544 31 1 1.3480 -2.9659 3.0001 32 1 -0.0266 -5.0409 1.2326 33 1 1.9451 -5.3960 3.5336 34 1 0.1922 -5.6822 3.6517 35 1 1.1938 -7.1776 1.4751 36 1 2.7554 -13.1889 3.6870 37 1 2.4970 -13.4328 0.5709 38 1 3.2123 -14.7014 1.7023 39 1 0.9983 -14.8546 2.9308 40 1 0.2825 -13.5860 1.7997 41 1 2.9035 -4.2516 1.5652 42 1 2.3062 -5.6052 0.5745 43 1 1.0409 -4.0613 -0.8475 44 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601198659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:28 Heat of formation + Delta-G solvation = 80.615440 kcal Electronic energy + Delta-G solvation = -26165.032816 eV Core-core repulsion = 22315.331111 eV Total energy + Delta-G solvation = -3849.701705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.07955 -40.08971 -38.22852 -37.95599 -35.86998 -35.16590 -33.23997 -32.48095 -30.85868 -29.80344 -27.49318 -25.83668 -25.39436 -23.91291 -22.95648 -22.75757 -22.19188 -21.17840 -20.62302 -19.28467 -18.75276 -18.63950 -17.29422 -16.78676 -16.28661 -16.18249 -15.56187 -15.18830 -14.88275 -14.46078 -14.10375 -13.71145 -13.54587 -13.34590 -13.23128 -12.84971 -12.63275 -12.47657 -12.43526 -12.10496 -12.01085 -11.68777 -11.40738 -11.32468 -11.11109 -11.04065 -10.81534 -10.72977 -10.58071 -10.30055 -10.27356 -10.24163 -9.95715 -9.64281 -9.52521 -9.36836 -8.48952 -6.69805 -5.81324 -3.23883 0.19216 1.47292 1.85345 2.55524 2.57817 3.21325 3.29293 3.37209 3.43225 3.44466 3.72172 4.22797 4.28063 4.36733 4.47913 4.65808 4.92957 5.05393 5.08233 5.09616 5.26271 5.27735 5.37264 5.39463 5.48981 5.52831 5.54867 5.70481 5.75717 5.92612 5.94186 6.13204 6.26138 6.37539 6.54095 6.61074 6.68998 6.75297 6.92126 6.95072 7.32997 7.51612 7.62458 7.65327 7.77328 8.43060 9.19261 9.82597 10.38884 11.27237 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.002104 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.898830 B =13305.659887 C =13677.749453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.122 3.878 14 N -0.698 5.698 15 C 0.612 3.388 16 O -0.484 6.484 17 C 0.147 3.853 18 N -0.417 5.417 19 C 0.200 3.800 20 C -0.083 4.083 21 C -0.157 4.157 22 C -0.155 4.155 23 N -0.366 5.366 24 O 0.100 5.900 25 C -0.130 4.130 26 C 0.145 3.855 27 H 0.254 0.746 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -24.118 4.164 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.351 5.351 15 C 0.391 3.609 16 O -0.354 6.354 17 C -0.076 4.076 18 N -0.153 5.153 19 C -0.072 4.072 20 C -0.103 4.103 21 C -0.194 4.194 22 C -0.193 4.193 23 N -0.070 5.070 24 O 0.036 5.964 25 C -0.169 4.169 26 C 0.018 3.982 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.246 0.754 36 H 0.157 0.843 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.861 -24.471 4.674 24.983 hybrid contribution 0.383 0.937 -0.452 1.108 sum 2.244 -23.535 4.222 24.015 Atomic orbital electron populations 1.70009 1.05248 1.25657 1.53836 1.25044 0.95291 0.98426 1.00859 0.86375 0.78926 0.83355 0.78143 1.20909 1.21641 1.21010 1.19135 0.92520 0.84845 1.41798 0.91785 1.44040 1.35893 1.01512 1.50047 1.20766 0.88651 0.98184 0.87864 1.22189 1.00519 0.94333 1.00213 1.21358 0.99125 0.95327 0.95215 1.21867 1.02515 0.78343 0.97318 1.45977 1.70525 1.07815 1.10746 1.16046 0.79200 0.79622 0.86063 1.90915 1.49182 1.81976 1.13373 1.28608 1.00229 0.98205 0.80590 1.71905 1.15368 0.97076 1.30901 1.24931 1.00576 0.98121 0.83565 1.20132 1.06866 0.81497 1.01758 1.23113 0.99460 1.00780 0.96093 1.23111 0.93414 0.99776 1.03020 1.74621 1.18703 0.90519 1.23143 1.85468 1.63229 1.18766 1.28979 1.22114 0.96935 0.98907 0.98970 1.20883 0.97649 0.86988 0.92634 0.93559 0.96376 0.89334 0.92874 0.92216 0.90881 0.90506 0.90662 0.75358 0.84256 0.87666 0.87178 0.87094 0.88275 0.91947 0.93371 0.96507 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.19 55.49 0.62 -24.97 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -14.09 2.99 -172.32 -0.52 -14.60 16 10 C 0.17 3.82 5.30 -3.71 -0.02 3.81 16 11 C -0.13 -2.25 5.36 -26.61 -0.14 -2.40 16 12 C -0.09 -1.27 2.19 -90.57 -0.20 -1.47 16 13 C 0.12 1.46 5.06 -4.04 -0.02 1.44 16 14 N -0.70 -7.41 5.27 -61.12 -0.32 -7.74 16 15 C 0.61 7.64 7.84 -12.15 -0.10 7.55 16 16 O -0.48 -7.62 17.10 5.38 0.09 -7.53 16 17 C 0.15 1.77 8.24 -13.81 -0.11 1.66 16 18 N -0.42 -5.43 11.55 -10.17 -0.12 -5.55 16 19 C 0.20 2.24 7.72 -156.59 -1.21 1.03 16 20 C -0.08 -0.65 6.33 -91.77 -0.58 -1.23 16 21 C -0.16 -0.93 10.14 -26.73 -0.27 -1.20 16 22 C -0.15 -0.92 10.23 -26.73 -0.27 -1.19 16 23 N -0.37 -4.18 11.76 31.13 0.37 -3.82 16 24 O 0.10 1.10 11.15 16.75 0.19 1.28 16 25 C -0.13 -1.94 5.25 -26.61 -0.14 -2.08 16 26 C 0.14 2.80 6.52 -3.72 -0.02 2.78 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.41 3.56 7.48 -40.82 -0.31 3.26 16 36 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.73 7.91 -51.93 -0.41 0.32 16 38 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.58 7.15 -51.93 -0.37 0.21 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -31.25 367.04 -8.94 -40.20 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.44 Total: -0.84 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.32 Total: 1.77 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.03 Total: -56.68 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: 0.28 Total: -6.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.25 -8.94 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601198659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.813 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds