Wall clock time and date at job start Tue Mar 31 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46483 * 240.00078 * 3 2 1 5 5 H 1.48501 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47232 * 119.99965 * 3 2 1 7 7 C 1.38805 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99898 * 163.07212 * 7 2 1 9 9 N 1.36942 * 120.00378 * 343.07534 * 7 2 1 10 10 C 1.46923 * 120.62360 * 331.83486 * 9 7 2 11 11 C 1.53199 * 108.77504 * 233.62829 * 10 9 7 12 12 C 1.53037 * 109.30869 * 305.36851 * 11 10 9 13 13 C 1.53008 * 109.45626 * 181.38168 * 12 11 10 14 14 N 1.46503 * 109.46845 * 174.97064 * 13 12 11 15 15 C 1.34774 * 119.99738 * 180.02562 * 14 13 12 16 16 O 1.21489 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.48248 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31789 * 126.64039 * 180.02562 * 17 15 14 19 19 C 1.34117 * 105.61342 * 179.97438 * 18 17 15 20 20 C 1.50702 * 126.19361 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49662 * 188.62310 * 20 19 18 22 22 C 1.53000 * 117.49554 * 120.00259 * 20 19 18 23 23 N 1.30094 * 107.61253 * 359.97438 * 19 18 17 24 24 O 1.21305 * 110.38638 * 359.72960 * 23 19 18 25 25 C 1.53042 * 109.52750 * 61.37293 * 12 11 10 26 26 C 1.46917 * 120.63341 * 151.85668 * 9 7 2 27 27 H 0.96998 * 120.00588 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58828 * 113.84679 * 10 9 7 29 29 H 1.08999 * 109.71250 * 353.48659 * 10 9 7 30 30 H 1.08990 * 109.49649 * 185.41708 * 11 10 9 31 31 H 1.09002 * 109.49644 * 65.31793 * 11 10 9 32 32 H 1.08999 * 109.46682 * 301.35556 * 12 11 10 33 33 H 1.08991 * 109.47127 * 294.97331 * 13 12 11 34 34 H 1.08999 * 109.46537 * 54.97699 * 13 12 11 35 35 H 0.97004 * 120.00292 * 0.02562 * 14 13 12 36 36 H 1.08993 * 115.54994 * 334.33150 * 20 19 18 37 37 H 1.08997 * 117.50181 * 0.02562 * 21 20 19 38 38 H 1.09003 * 117.49399 * 145.02358 * 21 20 19 39 39 H 1.08999 * 117.49425 * 214.98234 * 22 20 19 40 40 H 1.08996 * 117.49983 * 359.97438 * 22 20 19 41 41 H 1.08999 * 109.49804 * 58.57778 * 25 12 11 42 42 H 1.09005 * 109.49685 * 178.67457 * 25 12 11 43 43 H 1.08997 * 109.58818 * 246.16011 * 26 9 7 44 44 H 1.09005 * 109.58899 * 6.43776 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3623 0.3463 10 6 0.2263 -2.3399 1.2681 11 6 0.4983 -3.3182 2.4152 12 6 0.8134 -4.7000 1.8378 13 6 1.0518 -5.6880 2.9816 14 7 1.2346 -7.0344 2.4336 15 6 1.4596 -8.0739 3.2613 16 8 1.5104 -7.8946 4.4619 17 6 1.6452 -9.4362 2.7069 18 7 1.8706 -10.5398 3.3910 19 6 1.9690 -11.5170 2.4777 20 6 2.2258 -12.9752 2.7586 21 6 2.5012 -13.8873 1.5615 22 6 1.1658 -13.9798 2.3025 23 7 1.8025 -10.9782 1.3053 24 8 1.6095 -9.7854 1.4120 25 6 2.0688 -4.6162 0.9665 26 6 1.8144 -3.6529 -0.1971 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6767 -2.6412 0.7374 29 1 0.0965 -1.3344 1.6685 30 1 -0.3821 -3.3831 3.0544 31 1 1.3480 -2.9659 3.0001 32 1 -0.0266 -5.0409 1.2326 33 1 1.9451 -5.3960 3.5336 34 1 0.1922 -5.6822 3.6517 35 1 1.1938 -7.1776 1.4751 36 1 2.7554 -13.1889 3.6870 37 1 2.4970 -13.4328 0.5709 38 1 3.2123 -14.7014 1.7023 39 1 0.9983 -14.8546 2.9308 40 1 0.2825 -13.5860 1.7997 41 1 2.9035 -4.2516 1.5652 42 1 2.3062 -5.6052 0.5745 43 1 1.0409 -4.0613 -0.8475 44 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601198659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:27 Heat of formation + Delta-G solvation = 59.407212 kcal Electronic energy + Delta-G solvation = -26165.952474 eV Core-core repulsion = 22315.331111 eV Total energy + Delta-G solvation = -3850.621363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.95126 -41.12767 -39.37469 -38.80970 -36.83050 -36.35639 -34.69477 -33.53868 -32.47061 -31.37356 -28.84945 -26.80197 -26.49715 -25.33936 -23.90480 -23.46593 -23.37391 -22.56710 -21.54141 -20.67551 -19.69434 -19.52609 -18.64376 -18.12747 -17.34310 -16.82442 -16.81760 -16.56924 -15.87110 -15.63866 -15.38568 -15.26432 -15.01820 -14.73555 -14.19493 -13.99513 -13.85810 -13.60517 -13.45821 -13.30465 -12.97547 -12.81781 -12.59414 -12.53265 -12.51829 -12.26358 -12.10791 -12.03596 -11.85433 -11.79293 -11.59665 -11.57005 -11.14801 -11.08324 -10.93752 -10.50293 -10.36489 -8.63113 -7.84817 -5.29240 -0.72222 0.63747 0.90158 1.47924 1.50114 1.56557 1.60663 1.70892 2.50784 2.53332 2.66916 2.98014 3.29537 3.48839 3.70591 3.74355 3.83305 3.90635 3.95815 3.98466 4.10063 4.31722 4.53297 4.56417 4.58928 4.67448 4.70059 4.74713 4.80211 4.86190 4.96105 4.99616 5.01148 5.09893 5.12997 5.20053 5.32981 5.35281 5.47465 5.59289 5.69677 5.84249 6.02562 6.42992 6.63070 6.76136 7.19216 7.92191 8.41751 9.20895 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.002104 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.898830 B =13305.659887 C =13677.749453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.175 3.825 11 C -0.122 4.122 12 C -0.080 4.080 13 C 0.133 3.867 14 N -0.682 5.682 15 C 0.621 3.379 16 O -0.518 6.518 17 C 0.148 3.852 18 N -0.442 5.442 19 C 0.198 3.802 20 C -0.106 4.106 21 C -0.146 4.146 22 C -0.145 4.145 23 N -0.376 5.376 24 O 0.108 5.892 25 C -0.119 4.119 26 C 0.138 3.862 27 H 0.249 0.751 28 H -0.001 1.001 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.422 0.578 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.018 0.982 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -26.409 4.410 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.049 3.951 11 C -0.161 4.161 12 C -0.099 4.099 13 C 0.011 3.989 14 N -0.335 5.335 15 C 0.400 3.600 16 O -0.392 6.392 17 C -0.076 4.076 18 N -0.178 5.178 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.184 4.184 22 C -0.184 4.184 23 N -0.080 5.080 24 O 0.044 5.956 25 C -0.157 4.157 26 C 0.013 3.987 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.168 0.832 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.660 -26.791 4.881 27.361 hybrid contribution 0.136 1.590 -0.604 1.707 sum 2.796 -25.201 4.276 25.713 Atomic orbital electron populations 1.70160 1.06522 1.25795 1.55543 1.25752 0.96030 1.01353 1.01537 0.85410 0.77617 0.79587 0.78252 1.20263 1.22140 1.20551 1.19455 0.92738 0.86239 1.40675 0.91865 1.44333 1.36002 1.02365 1.50902 1.20591 0.87771 0.97636 0.89062 1.21971 1.01264 0.94673 0.98205 1.21188 0.98983 0.94047 0.95692 1.21630 1.02893 0.78136 0.96260 1.45787 1.69486 1.06963 1.11235 1.15962 0.78604 0.79831 0.85568 1.90903 1.50953 1.82505 1.14833 1.28404 1.00344 0.97866 0.80963 1.71911 1.16168 0.97854 1.31889 1.25513 0.99587 0.99229 0.82985 1.20426 1.08837 0.80083 1.03219 1.23198 1.00009 1.00434 0.94727 1.23216 0.92833 0.99538 1.02768 1.74605 1.19370 0.90617 1.23392 1.85455 1.63041 1.18734 1.28349 1.21979 0.97080 0.99429 0.97259 1.21078 0.97230 0.86014 0.94373 0.94188 0.98321 0.93146 0.90779 0.92803 0.89928 0.90638 0.89867 0.73923 0.83164 0.88830 0.84767 0.84728 0.89273 0.92658 0.89631 0.96399 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 11.19 21.65 0.24 -54.28 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 3 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.26 -14.06 9.58 84.03 0.81 -13.25 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -29.35 2.99 -699.11 -2.09 -31.44 16 10 C 0.18 7.95 5.30 86.37 0.46 8.41 16 11 C -0.12 -3.99 5.36 30.67 0.16 -3.83 16 12 C -0.08 -2.04 2.19 -10.76 -0.02 -2.07 16 13 C 0.13 2.82 5.06 86.38 0.44 3.25 16 14 N -0.68 -12.59 5.27 -465.59 -2.45 -15.05 16 15 C 0.62 14.39 7.84 86.91 0.68 15.08 16 16 O -0.52 -15.68 17.10 -3.68 -0.06 -15.74 16 17 C 0.15 3.35 8.24 87.49 0.72 4.07 16 18 N -0.44 -11.09 11.55 -303.05 -3.50 -14.59 16 19 C 0.20 4.20 7.72 138.54 1.07 5.27 16 20 C -0.11 -1.48 6.33 -11.54 -0.07 -1.55 16 21 C -0.15 -1.41 10.14 30.59 0.31 -1.10 16 22 C -0.15 -1.41 10.23 30.59 0.31 -1.09 16 23 N -0.38 -8.11 11.76 -58.94 -0.69 -8.80 16 24 O 0.11 2.20 11.15 70.00 0.78 2.98 16 25 C -0.12 -3.26 5.25 30.67 0.16 -3.10 16 26 C 0.14 5.21 6.52 86.36 0.56 5.77 16 27 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.05 2.66 6.06 -2.39 -0.01 2.65 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.42 5.90 7.48 -92.71 -0.69 5.21 16 36 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.14 7.91 -2.39 -0.02 1.13 16 38 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 1.74 7.15 -2.38 -0.02 1.72 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 1.87 7.93 -2.38 -0.02 1.85 16 Total: -1.00 -69.39 367.04 0.59 -68.80 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.33 Total: 8.15 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.01 Total: 13.46 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -8.50 Total: -124.17 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.72 Total: -12.76 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.39 0.59 -68.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601198659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.207 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds