Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38070 * 119.57399 * 2 1 4 4 C 1.38834 * 119.32801 * 180.27253 * 3 2 1 5 5 C 1.50705 * 120.74718 * 179.70468 * 4 3 2 6 6 C 1.38341 * 118.50629 * 359.43225 * 4 3 2 7 7 N 1.48002 * 120.44923 * 180.30028 * 6 4 3 8 8 O 1.21796 * 120.00416 * 85.18149 * 7 6 4 9 9 O 1.21806 * 119.99329 * 265.17682 * 7 6 4 10 10 C 1.39092 * 119.09819 * 0.27542 * 6 4 3 11 11 N 1.39005 * 119.70559 * 180.02562 * 10 6 4 12 12 C 1.46956 * 111.00052 * 248.55991 * 11 10 6 13 13 C 1.53053 * 109.36280 * 176.81203 * 12 11 10 14 14 N 1.46951 * 109.36554 * 58.40228 * 13 12 11 15 15 C 1.46899 * 110.99994 * 176.80752 * 14 13 12 16 16 C 1.50700 * 109.46847 * 59.38201 * 15 14 13 17 17 H 1.08005 * 120.00141 * 355.20625 * 16 15 14 18 18 C 1.37878 * 119.99988 * 175.20744 * 16 15 14 19 19 N 1.31519 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00214 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47393 * 89.99503 * 20 18 16 22 22 H 1.48495 * 109.47423 * 210.00203 * 20 18 16 23 23 H 1.48503 * 109.47085 * 330.00227 * 20 18 16 24 24 C 1.46956 * 110.87985 * 300.67769 * 14 13 12 25 25 C 1.46960 * 111.00040 * 124.76063 * 11 10 6 26 26 N 1.31935 * 119.57487 * 179.69324 * 2 1 3 27 27 H 1.08995 * 109.47585 * 270.30629 * 1 2 3 28 28 H 1.09004 * 109.46474 * 30.30766 * 1 2 3 29 29 H 1.08993 * 109.46906 * 150.30077 * 1 2 3 30 30 H 1.08004 * 120.33323 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47147 * 269.71957 * 5 4 3 32 32 H 1.09000 * 109.47134 * 29.72125 * 5 4 3 33 33 H 1.08997 * 109.47162 * 149.71783 * 5 4 3 34 34 H 1.09002 * 109.48889 * 296.78025 * 12 11 10 35 35 H 1.08996 * 109.48507 * 56.84466 * 12 11 10 36 36 H 1.08999 * 109.48923 * 298.42978 * 13 12 11 37 37 H 1.08998 * 109.48434 * 178.36911 * 13 12 11 38 38 H 1.09000 * 109.47123 * 179.38054 * 15 14 13 39 39 H 1.08993 * 109.47302 * 299.38353 * 15 14 13 40 40 H 0.96998 * 120.00099 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48889 * 299.35247 * 24 14 13 42 42 H 1.09007 * 109.48791 * 179.28485 * 24 14 13 43 43 H 1.09003 * 109.49027 * 303.15818 * 25 11 10 44 44 H 1.08994 * 109.48981 * 63.19903 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 -0.0058 5 6 4.3528 2.4868 -0.0126 6 6 4.2318 -0.0236 0.0007 7 7 5.7108 -0.0801 0.0017 8 8 6.3223 -0.0095 1.0526 9 8 6.3163 -0.1973 -1.0487 10 6 3.4816 -1.1949 0.0069 11 7 4.1268 -2.4261 0.0140 12 6 3.9276 -3.1324 -1.2593 13 6 4.7168 -4.4436 -1.2411 14 7 4.2679 -5.2669 -0.1096 15 6 4.9497 -6.5681 -0.1021 16 6 6.4380 -6.3547 -0.0001 17 1 6.8430 -5.3537 -0.0242 18 6 7.2827 -7.4373 0.1241 19 7 6.7896 -8.6562 0.1539 20 14 9.1275 -7.1728 0.2513 21 1 9.5094 -7.0264 1.6789 22 1 9.8364 -8.3393 -0.3335 23 1 9.5035 -5.9424 -0.4902 24 6 4.4671 -4.5606 1.1636 25 6 3.6779 -3.2494 1.1455 26 7 2.1582 -1.1474 0.0061 27 1 -0.3634 0.0055 1.0276 28 1 -0.3632 0.8873 -0.5186 29 1 -0.3633 -0.8926 -0.5091 30 1 1.6469 2.1353 -0.0004 31 1 4.5399 2.7927 -1.0419 32 1 3.7769 3.2592 0.4971 33 1 5.3027 2.3427 0.5020 34 1 2.8676 -3.3478 -1.3937 35 1 4.2791 -2.5077 -2.0804 36 1 5.7797 -4.2269 -1.1340 37 1 4.5474 -4.9829 -2.1730 38 1 4.6071 -7.1529 0.7515 39 1 4.7218 -7.1030 -1.0240 40 1 7.3839 -9.4178 0.2416 41 1 5.5272 -4.3452 1.2980 42 1 4.1156 -5.1852 1.9849 43 1 3.8472 -2.7101 2.0775 44 1 2.6150 -3.4658 1.0386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = 51.841427 kcal Electronic energy + Delta-G solvation = -27911.091738 eV Core-core repulsion = 24060.142298 eV Total energy + Delta-G solvation = -3850.949440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28783 -40.92693 -38.76071 -36.33853 -35.69810 -34.89098 -32.80941 -31.75178 -30.53870 -29.63224 -28.26665 -27.88160 -25.57775 -24.77304 -23.14707 -22.71286 -21.95709 -21.40769 -19.46758 -19.09015 -18.64042 -18.17170 -17.12446 -16.28020 -16.14440 -15.58225 -15.14725 -14.84643 -14.55710 -14.26707 -14.17798 -13.99496 -13.92292 -13.53520 -13.23129 -12.97250 -12.88808 -12.65921 -12.52958 -12.06177 -11.91789 -11.52364 -11.25126 -11.13406 -10.96363 -10.88044 -10.87678 -10.66144 -10.55637 -10.26981 -10.20127 -10.16666 -9.86604 -9.55995 -9.53063 -8.78662 -8.40320 -7.22685 -6.00506 -4.09410 0.13225 0.43124 0.66024 1.38242 2.86541 3.16668 3.33110 3.39544 3.45494 3.71979 3.83222 4.25035 4.30667 4.45654 4.50053 4.73415 4.86680 4.89359 4.96216 5.08861 5.14141 5.21770 5.30062 5.34857 5.36234 5.43201 5.44912 5.59623 5.75859 5.81056 5.85202 5.97896 6.11729 6.34642 6.50303 6.68647 6.76683 6.84882 6.99793 7.23967 7.25803 7.52991 7.69667 7.90961 8.01013 8.20872 8.30045 9.00641 9.58219 11.04783 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003832 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.186343 B = 7305.736483 C = 8457.934021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.177 3.823 3 C -0.179 4.179 4 C 0.014 3.986 5 C -0.133 4.133 6 C -0.071 4.071 7 N 0.040 4.960 8 O -0.141 6.141 9 O -0.133 6.133 10 C 0.373 3.627 11 N -0.500 5.500 12 C 0.066 3.934 13 C 0.065 3.935 14 N -0.542 5.542 15 C 0.188 3.812 16 C -0.551 4.551 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.065 3.935 25 C 0.066 3.934 26 N -0.493 5.493 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 22.914 -0.469 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.038 3.962 3 C -0.200 4.200 4 C 0.005 3.995 5 C -0.189 4.189 6 C -0.156 4.156 7 N 0.571 4.429 8 O -0.363 6.363 9 O -0.357 6.357 10 C 0.142 3.858 11 N -0.225 5.225 12 C -0.059 4.059 13 C -0.064 4.064 14 N -0.266 5.266 15 C 0.063 3.937 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.064 4.064 25 C -0.060 4.060 26 N -0.208 5.208 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.173 0.827 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.187 21.919 -0.448 26.114 hybrid contribution 2.038 0.719 0.143 2.166 sum -12.149 22.639 -0.305 25.694 Atomic orbital electron populations 1.20857 0.87367 1.04420 1.04005 1.21570 0.97819 0.87585 0.89222 1.21826 0.92080 1.00346 1.05700 1.20014 0.94458 0.93403 0.91651 1.21057 1.00417 0.93003 1.04417 1.21597 0.81139 0.95784 1.17120 1.43003 1.02314 0.97216 1.00362 1.94553 1.68474 1.52267 1.20959 1.94562 1.68963 1.51113 1.21108 1.19689 0.86408 0.91084 0.88577 1.60566 1.53147 1.01785 1.07004 1.22378 1.00498 0.95430 0.87617 1.21946 0.97983 0.90706 0.95783 1.62729 1.57476 1.05376 1.01035 1.19738 0.91437 0.84547 0.98012 1.21768 0.92941 0.93064 1.51193 0.92242 1.24948 0.98821 0.95092 0.94790 1.69947 1.35209 0.97986 1.49929 0.86642 0.85527 0.77842 0.78384 1.20591 1.21185 1.19700 1.21935 0.98925 0.91642 0.93874 1.22340 0.99337 0.93795 0.90571 1.68149 1.07740 1.29687 1.15217 0.89315 0.89881 0.89557 0.82699 0.88838 0.88946 0.90440 0.92614 0.90954 0.92797 0.90444 0.94700 0.95238 0.92833 0.93034 0.90515 0.91256 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.17 36.01 0.37 -0.27 16 2 C 0.18 1.68 6.78 -82.61 -0.56 1.12 16 3 C -0.18 -1.41 9.44 -39.42 -0.37 -1.79 16 4 C 0.01 0.14 5.91 -104.36 -0.62 -0.48 16 5 C -0.13 -0.99 9.84 36.01 0.35 -0.63 16 6 C -0.07 -1.01 6.17 -79.60 -0.49 -1.50 16 7 N 0.04 0.66 3.18 34.13 0.11 0.77 16 8 O -0.14 -2.44 18.99 -29.46 -0.56 -3.00 16 9 O -0.13 -2.32 19.25 -29.46 -0.57 -2.89 16 10 C 0.37 5.63 5.34 -155.01 -0.83 4.81 16 11 N -0.50 -8.64 4.40 -173.04 -0.76 -9.40 16 12 C 0.07 1.15 5.49 -3.77 -0.02 1.12 16 13 C 0.06 1.31 5.24 -3.77 -0.02 1.29 16 14 N -0.54 -11.82 4.92 -235.92 -1.16 -12.98 16 15 C 0.19 4.87 5.14 -4.98 -0.03 4.85 16 16 C -0.55 -15.37 7.67 -34.44 -0.26 -15.64 16 17 H 0.06 1.69 5.81 -52.48 -0.31 1.38 16 18 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.07 1.32 5.32 -3.77 -0.02 1.30 16 25 C 0.07 1.13 5.37 -3.77 -0.02 1.11 16 26 N -0.49 -6.54 9.55 -8.67 -0.08 -6.62 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.43 8.10 -51.93 -0.42 0.00 16 33 H 0.08 0.70 7.30 -51.93 -0.38 0.32 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 36 H 0.05 1.23 6.46 -51.93 -0.34 0.89 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.03 0.97 8.12 -51.93 -0.42 0.54 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 42 H 0.08 1.51 8.13 -51.92 -0.42 1.09 16 43 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 44 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -32.32 365.99 -10.82 -43.14 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.41 Total: -2.89 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.62 Total: -2.92 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -1.16 Total: -53.98 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -1.13 Total: -5.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.32 -10.82 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.977 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds