Wall clock time and date at job start Tue Mar 31 2020 12:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38070 * 119.57399 * 2 1 4 4 C 1.38834 * 119.32801 * 180.27253 * 3 2 1 5 5 C 1.50705 * 120.74718 * 179.70468 * 4 3 2 6 6 C 1.38341 * 118.50629 * 359.43225 * 4 3 2 7 7 N 1.48002 * 120.44923 * 180.30028 * 6 4 3 8 8 O 1.21796 * 120.00416 * 85.18149 * 7 6 4 9 9 O 1.21806 * 119.99329 * 265.17682 * 7 6 4 10 10 C 1.39092 * 119.09819 * 0.27542 * 6 4 3 11 11 N 1.39005 * 119.70559 * 180.02562 * 10 6 4 12 12 C 1.46956 * 111.00052 * 248.55991 * 11 10 6 13 13 C 1.53053 * 109.36280 * 176.81203 * 12 11 10 14 14 N 1.46951 * 109.36554 * 58.40228 * 13 12 11 15 15 C 1.46899 * 110.99994 * 176.80752 * 14 13 12 16 16 C 1.50700 * 109.46847 * 59.38201 * 15 14 13 17 17 H 1.08005 * 120.00141 * 355.20625 * 16 15 14 18 18 C 1.37878 * 119.99988 * 175.20744 * 16 15 14 19 19 N 1.31519 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00214 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47393 * 89.99503 * 20 18 16 22 22 H 1.48495 * 109.47423 * 210.00203 * 20 18 16 23 23 H 1.48503 * 109.47085 * 330.00227 * 20 18 16 24 24 C 1.46956 * 110.87985 * 300.67769 * 14 13 12 25 25 C 1.46960 * 111.00040 * 124.76063 * 11 10 6 26 26 N 1.31935 * 119.57487 * 179.69324 * 2 1 3 27 27 H 1.08995 * 109.47585 * 270.30629 * 1 2 3 28 28 H 1.09004 * 109.46474 * 30.30766 * 1 2 3 29 29 H 1.08993 * 109.46906 * 150.30077 * 1 2 3 30 30 H 1.08004 * 120.33323 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47147 * 269.71957 * 5 4 3 32 32 H 1.09000 * 109.47134 * 29.72125 * 5 4 3 33 33 H 1.08997 * 109.47162 * 149.71783 * 5 4 3 34 34 H 1.09002 * 109.48889 * 296.78025 * 12 11 10 35 35 H 1.08996 * 109.48507 * 56.84466 * 12 11 10 36 36 H 1.08999 * 109.48923 * 298.42978 * 13 12 11 37 37 H 1.08998 * 109.48434 * 178.36911 * 13 12 11 38 38 H 1.09000 * 109.47123 * 179.38054 * 15 14 13 39 39 H 1.08993 * 109.47302 * 299.38353 * 15 14 13 40 40 H 0.96998 * 120.00099 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48889 * 299.35247 * 24 14 13 42 42 H 1.09007 * 109.48791 * 179.28485 * 24 14 13 43 43 H 1.09003 * 109.49027 * 303.15818 * 25 11 10 44 44 H 1.08994 * 109.48981 * 63.19903 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 -0.0058 5 6 4.3528 2.4868 -0.0126 6 6 4.2318 -0.0236 0.0007 7 7 5.7108 -0.0801 0.0017 8 8 6.3223 -0.0095 1.0526 9 8 6.3163 -0.1973 -1.0487 10 6 3.4816 -1.1949 0.0069 11 7 4.1268 -2.4261 0.0140 12 6 3.9276 -3.1324 -1.2593 13 6 4.7168 -4.4436 -1.2411 14 7 4.2679 -5.2669 -0.1096 15 6 4.9497 -6.5681 -0.1021 16 6 6.4380 -6.3547 -0.0001 17 1 6.8430 -5.3537 -0.0242 18 6 7.2827 -7.4373 0.1241 19 7 6.7896 -8.6562 0.1539 20 14 9.1275 -7.1728 0.2513 21 1 9.5094 -7.0264 1.6789 22 1 9.8364 -8.3393 -0.3335 23 1 9.5035 -5.9424 -0.4902 24 6 4.4671 -4.5606 1.1636 25 6 3.6779 -3.2494 1.1455 26 7 2.1582 -1.1474 0.0061 27 1 -0.3634 0.0055 1.0276 28 1 -0.3632 0.8873 -0.5186 29 1 -0.3633 -0.8926 -0.5091 30 1 1.6469 2.1353 -0.0004 31 1 4.5399 2.7927 -1.0419 32 1 3.7769 3.2592 0.4971 33 1 5.3027 2.3427 0.5020 34 1 2.8676 -3.3478 -1.3937 35 1 4.2791 -2.5077 -2.0804 36 1 5.7797 -4.2269 -1.1340 37 1 4.5474 -4.9829 -2.1730 38 1 4.6071 -7.1529 0.7515 39 1 4.7218 -7.1030 -1.0240 40 1 7.3839 -9.4178 0.2416 41 1 5.5272 -4.3452 1.2980 42 1 4.1156 -5.1852 1.9849 43 1 3.8472 -2.7101 2.0775 44 1 2.6150 -3.4658 1.0386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:41 Heat of formation + Delta-G solvation = 30.651474 kcal Electronic energy + Delta-G solvation = -27912.010604 eV Core-core repulsion = 24060.142298 eV Total energy + Delta-G solvation = -3851.868305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.42403 -41.97510 -40.15938 -37.61656 -37.21059 -35.69707 -34.69362 -33.05430 -32.08870 -30.47419 -29.65911 -28.86237 -27.23634 -26.06163 -24.70580 -24.17327 -23.09909 -22.65590 -20.92345 -20.31591 -19.88995 -19.21469 -18.61680 -18.15210 -17.19636 -16.83749 -16.72122 -15.98941 -15.89658 -15.71728 -15.56056 -15.12474 -14.86012 -14.61182 -14.46837 -14.04487 -13.83679 -13.71201 -13.44629 -13.41755 -13.08586 -12.99946 -12.87013 -12.83197 -12.55148 -12.49200 -12.38849 -12.29386 -12.27485 -11.98033 -11.85630 -11.63453 -11.16917 -11.10976 -10.63740 -10.38338 -10.05597 -9.16409 -8.20246 -6.38456 -0.77586 -0.63155 -0.38055 0.28876 1.34256 1.35118 1.46609 2.03520 2.07060 2.35204 2.91775 3.05578 3.15432 3.20603 3.30823 3.46662 3.75094 3.83883 3.97865 4.07761 4.19278 4.22472 4.27545 4.32328 4.39379 4.46950 4.58320 4.67624 4.72994 4.73928 4.77902 4.83516 4.91580 4.94658 5.05726 5.13780 5.14093 5.28005 5.28342 5.47455 5.68017 5.76743 5.97037 6.16042 6.34633 6.36045 6.39779 6.80123 7.32979 8.83052 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003832 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.186343 B = 7305.736483 C = 8457.934021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.172 3.828 3 C -0.150 4.150 4 C 0.012 3.988 5 C -0.131 4.131 6 C -0.093 4.093 7 N 0.045 4.955 8 O -0.162 6.162 9 O -0.159 6.159 10 C 0.348 3.652 11 N -0.518 5.518 12 C 0.083 3.917 13 C 0.069 3.931 14 N -0.536 5.536 15 C 0.202 3.798 16 C -0.559 4.559 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.922 5.922 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.274 1.274 24 C 0.069 3.931 25 C 0.083 3.917 26 N -0.512 5.512 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.209 0.791 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.079 0.921 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.267 0.733 41 H 0.021 0.979 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 26.249 -0.421 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.034 3.966 3 C -0.170 4.170 4 C 0.003 3.997 5 C -0.187 4.187 6 C -0.178 4.178 7 N 0.572 4.428 8 O -0.383 6.383 9 O -0.381 6.381 10 C 0.119 3.881 11 N -0.243 5.243 12 C -0.043 4.043 13 C -0.060 4.060 14 N -0.260 5.260 15 C 0.076 3.924 16 C -0.598 4.598 17 H 0.068 0.932 18 C -0.182 4.182 19 N -0.562 5.562 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.060 4.060 25 C -0.044 4.044 26 N -0.228 5.228 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.031 0.969 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.253 25.275 -0.405 30.052 hybrid contribution 2.513 -0.206 0.130 2.525 sum -13.740 25.068 -0.274 28.588 Atomic orbital electron populations 1.21019 0.84382 1.05680 1.05234 1.22345 0.99612 0.87089 0.87574 1.22401 0.90818 1.01835 1.01903 1.20505 0.95654 0.92815 0.90728 1.21176 0.99665 0.92524 1.05364 1.21831 0.78850 0.97361 1.19800 1.43396 1.03653 0.96050 0.99692 1.94525 1.69747 1.52856 1.21160 1.94536 1.70237 1.51955 1.21346 1.19465 0.87373 0.89882 0.91419 1.60379 1.54681 1.02779 1.06449 1.22125 0.99957 0.93729 0.88498 1.21907 0.96714 0.92241 0.95135 1.62662 1.56471 1.04455 1.02403 1.19402 0.90893 0.86282 0.95855 1.21928 0.94078 0.92684 1.51075 0.93225 1.25720 1.03257 0.94816 0.94412 1.70042 1.36849 0.98713 1.50593 0.85641 0.80221 0.77829 0.78556 1.19888 1.20047 1.19843 1.21907 0.97703 0.93348 0.93043 1.22089 0.98684 0.92133 0.91463 1.68117 1.06550 1.31932 1.16155 0.87876 0.86316 0.90610 0.77423 0.87663 0.85132 0.92660 0.92015 0.90094 0.95885 0.90300 0.96910 0.97227 0.92449 0.96090 0.90398 0.90265 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.17 71.24 0.72 -0.01 16 2 C 0.17 2.58 6.78 42.50 0.29 2.87 16 3 C -0.15 -1.60 9.44 22.37 0.21 -1.39 16 4 C 0.01 0.20 5.91 -19.70 -0.12 0.09 16 5 C -0.13 -1.53 9.84 71.24 0.70 -0.83 16 6 C -0.09 -2.56 6.17 36.61 0.23 -2.34 16 7 N 0.04 1.50 3.18 -45.93 -0.15 1.36 16 8 O -0.16 -5.82 18.99 18.89 0.36 -5.46 16 9 O -0.16 -5.74 19.25 18.88 0.36 -5.38 16 10 C 0.35 10.26 5.34 133.04 0.71 10.98 16 11 N -0.52 -18.14 4.40 -701.39 -3.09 -21.23 16 12 C 0.08 2.90 5.49 86.31 0.47 3.37 16 13 C 0.07 2.91 5.24 86.31 0.45 3.36 16 14 N -0.54 -24.39 4.92 -900.31 -4.43 -28.82 16 15 C 0.20 11.00 5.14 85.56 0.44 11.44 16 16 C -0.56 -32.46 7.67 25.60 0.20 -32.26 16 17 H 0.05 2.95 5.81 -2.91 -0.02 2.93 16 18 C 0.02 1.04 5.46 84.65 0.46 1.50 16 19 N -0.92 -55.96 13.29 21.45 0.28 -55.67 16 20 Si 0.95 46.19 29.54 68.60 2.03 48.21 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 24 C 0.07 2.91 5.32 86.31 0.46 3.36 16 25 C 0.08 2.88 5.37 86.31 0.46 3.35 16 26 N -0.51 -12.55 9.55 -181.34 -1.73 -14.28 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 0.01 8.08 -2.38 -0.02 0.00 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.21 0.02 8.06 -2.91 -0.02 0.00 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.13 0.51 8.10 -2.39 -0.02 0.49 16 33 H 0.05 0.93 7.30 -2.39 -0.02 0.91 16 34 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 35 H 0.08 2.67 8.13 -2.39 -0.02 2.66 16 36 H 0.02 1.11 6.46 -2.39 -0.02 1.09 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.01 0.74 8.12 -2.39 -0.02 0.72 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.02 1.00 6.95 -2.39 -0.02 0.99 16 42 H 0.08 3.20 8.13 -2.38 -0.02 3.18 16 43 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 44 H 0.07 2.19 7.85 -2.39 -0.02 2.17 16 Total: -1.00 -74.83 365.99 0.34 -74.48 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.01 Total: 3.28 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.69 Total: 3.50 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -9.11 Total: -118.64 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.72 Total: -10.84 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.83 0.34 -74.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.135 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds