Wall clock time and date at job start Tue Mar 31 2020 13:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34641 * 117.00151 * 2 1 4 4 O 1.21384 * 119.99698 * 359.97438 * 3 2 1 5 5 C 1.48389 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.39535 * 120.50206 * 179.97438 * 5 3 2 7 7 C 1.38792 * 118.41665 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.37580 * 180.02562 * 7 6 5 9 9 N 1.32126 * 119.24505 * 0.02562 * 7 6 5 10 10 C 1.32568 * 120.96732 * 0.02562 * 9 7 6 11 11 N 1.38432 * 119.13583 * 179.97438 * 10 9 7 12 12 C 1.46956 * 111.00188 * 180.02562 * 11 10 9 13 13 C 1.53056 * 109.38342 * 183.17849 * 12 11 10 14 14 N 1.46963 * 109.35944 * 301.62902 * 13 12 11 15 15 C 1.46903 * 110.99595 * 183.16796 * 14 13 12 16 16 C 1.50697 * 109.46882 * 66.17766 * 15 14 13 17 17 H 1.08001 * 120.00544 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99793 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00484 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99927 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47267 * 89.99936 * 20 18 16 22 22 H 1.48505 * 109.47062 * 210.00116 * 20 18 16 23 23 H 1.48496 * 109.46947 * 329.99759 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 14 13 12 25 25 C 1.46962 * 110.99863 * 303.80021 * 11 10 9 26 26 N 1.32280 * 121.73127 * 0.27565 * 10 9 7 27 27 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47134 * 299.99841 * 1 2 3 29 29 H 1.08993 * 109.47190 * 60.00093 * 1 2 3 30 30 H 1.08002 * 120.79552 * 0.02562 * 6 5 3 31 31 H 1.09000 * 109.46837 * 269.97798 * 8 7 6 32 32 H 1.09004 * 109.47104 * 29.97446 * 8 7 6 33 33 H 1.08999 * 109.47186 * 149.97586 * 8 7 6 34 34 H 1.09002 * 109.48806 * 303.15576 * 12 11 10 35 35 H 1.09002 * 109.49141 * 63.19849 * 12 11 10 36 36 H 1.08992 * 109.49038 * 61.57437 * 13 12 11 37 37 H 1.08994 * 109.48641 * 181.64718 * 13 12 11 38 38 H 1.09001 * 109.46898 * 186.18135 * 15 14 13 39 39 H 1.08997 * 109.46990 * 306.17810 * 15 14 13 40 40 H 0.96996 * 120.00421 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48806 * 180.71933 * 24 14 13 42 42 H 1.09003 * 109.49203 * 60.65575 * 24 14 13 43 43 H 1.09001 * 109.48625 * 296.77698 * 25 11 10 44 44 H 1.09003 * 109.48941 * 56.82306 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4021 2.2176 -0.0005 5 6 3.5451 1.2772 -0.0006 6 6 4.1895 2.5148 -0.0011 7 6 5.5773 2.5369 -0.0022 8 6 6.3186 3.8490 -0.0022 9 7 6.2410 1.3945 -0.0032 10 6 5.6008 0.2336 -0.0037 11 7 6.3342 -0.9405 -0.0052 12 6 5.4495 -2.1140 -0.0062 13 6 6.2949 -3.3875 0.0722 14 7 7.2211 -3.4283 -1.0681 15 6 7.9993 -4.6743 -1.0698 16 6 7.0786 -5.8412 -1.3174 17 1 6.0211 -5.6741 -1.4597 18 6 7.5861 -7.1224 -1.3622 19 7 6.7827 -8.1409 -1.5788 20 14 9.4151 -7.4116 -1.1154 21 1 9.6931 -7.6183 0.3286 22 1 9.8331 -8.6158 -1.8773 23 1 10.1729 -6.2307 -1.6013 24 6 8.1057 -2.2548 -1.0672 25 6 7.2596 -0.9819 -1.1461 26 7 4.2797 0.1677 -0.0086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.6220 3.4337 -0.0007 31 1 6.4968 4.1655 -1.0299 32 1 5.7226 4.6031 0.5120 33 1 7.2724 3.7275 0.5112 34 1 4.7822 -2.0670 0.8544 35 1 4.8603 -2.1245 -0.9231 36 1 6.8633 -3.3900 1.0022 37 1 5.6421 -4.2597 0.0421 38 1 8.7518 -4.6316 -1.8573 39 1 8.4903 -4.7972 -0.1045 40 1 7.1397 -9.0422 -1.6099 41 1 8.7731 -2.3018 -1.9278 42 1 8.6948 -2.2441 -0.1501 43 1 6.6908 -0.9799 -2.0759 44 1 7.9120 -0.1091 -1.1170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:33 Heat of formation + Delta-G solvation = 3.019930 kcal Electronic energy + Delta-G solvation = -26884.353690 eV Core-core repulsion = 23031.287191 eV Total energy + Delta-G solvation = -3853.066499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73265 -40.47748 -38.82710 -36.85651 -35.65248 -34.70052 -32.70114 -31.81919 -30.75628 -29.02489 -28.46570 -28.24868 -25.63518 -25.10690 -23.41435 -22.55098 -21.31144 -21.09991 -19.46546 -18.78640 -17.77034 -17.03223 -16.84294 -16.77612 -16.53997 -15.76436 -15.61352 -14.76850 -14.51707 -14.39097 -14.17246 -13.98285 -13.88010 -13.72273 -13.57214 -13.38870 -12.89004 -12.73414 -12.42247 -12.34192 -12.10119 -11.65487 -11.32753 -11.22632 -11.10896 -11.08073 -10.97543 -10.84380 -10.79041 -10.63501 -10.22235 -10.07559 -9.81982 -9.53058 -9.27946 -8.59120 -8.48765 -7.45724 -6.06137 -4.03892 0.10242 0.67587 2.08132 2.14114 2.97767 3.28106 3.35880 3.37503 3.45160 3.62224 4.13866 4.34435 4.41227 4.56628 4.67973 4.78962 4.82843 4.91073 4.94759 5.14881 5.16756 5.24497 5.25444 5.29026 5.36624 5.46031 5.55015 5.57797 5.79278 5.81028 5.88936 5.98700 6.04607 6.18271 6.39833 6.45241 6.56888 6.65121 6.83468 6.95650 7.03819 7.30468 7.56572 7.83600 7.86855 7.97798 8.63109 9.01954 9.55306 11.06827 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.003102 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.346081 B = 9025.594176 C =10608.541830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.526 3.474 4 O -0.492 6.492 5 C 0.173 3.827 6 C -0.206 4.206 7 C 0.204 3.796 8 C -0.105 4.105 9 N -0.511 5.511 10 C 0.507 3.493 11 N -0.457 5.457 12 C 0.071 3.929 13 C 0.063 3.937 14 N -0.530 5.530 15 C 0.163 3.837 16 C -0.511 4.511 17 H 0.081 0.919 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.052 3.948 25 C 0.073 3.927 26 N -0.509 5.509 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.102 0.898 38 H 0.030 0.970 39 H -0.014 1.014 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 23.677 3.627 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.368 3.632 4 O -0.378 6.378 5 C 0.025 3.975 6 C -0.231 4.231 7 C 0.054 3.946 8 C -0.162 4.162 9 N -0.231 5.231 10 C 0.151 3.849 11 N -0.176 5.176 12 C -0.056 4.056 13 C -0.065 4.065 14 N -0.255 5.255 15 C 0.037 3.963 16 C -0.549 4.549 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.703 3.297 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.077 4.077 25 C -0.052 4.052 26 N -0.232 5.232 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.120 0.880 38 H 0.048 0.952 39 H 0.004 0.996 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.732 22.788 3.578 23.769 hybrid contribution 0.313 0.381 0.400 0.635 sum -5.418 23.170 3.978 24.125 Atomic orbital electron populations 1.23421 0.75501 1.04491 1.02610 1.86715 1.23615 1.31101 1.82729 1.20747 0.87495 0.82064 0.72898 1.90844 1.65619 1.36230 1.45142 1.20209 0.91095 0.89755 0.96457 1.22510 0.95966 0.99117 1.05496 1.21670 0.90113 0.94345 0.88521 1.20817 1.00982 0.90331 1.04108 1.67825 1.41214 0.97564 1.16500 1.21128 0.84600 0.90127 0.89065 1.58729 1.17965 0.99582 1.41354 1.22320 0.93632 0.86471 1.03135 1.22157 0.95978 0.96461 0.91934 1.62174 1.19090 1.02365 1.41874 1.20172 0.93861 0.87317 0.94956 1.21020 0.96308 0.88854 1.48698 0.90065 1.24896 0.97517 0.96038 0.94832 1.69891 1.34950 0.99022 1.49975 0.86861 0.86371 0.78014 0.78473 1.20339 1.21184 1.19178 1.22171 0.94609 0.89808 1.01079 1.22328 0.94194 0.99789 0.88938 1.68448 1.07092 1.31223 1.16431 0.87342 0.91630 0.91585 0.82322 0.89206 0.89696 0.89418 0.89473 0.91723 0.94982 0.88005 0.95217 0.99607 0.92646 0.89966 0.94507 0.92789 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.33 -4.01 10.42 -40.33 -0.42 -4.43 16 3 C 0.53 6.67 7.97 34.91 0.28 6.95 16 4 O -0.49 -6.45 16.21 -19.18 -0.31 -6.76 16 5 C 0.17 2.24 6.79 -82.67 -0.56 1.68 16 6 C -0.21 -2.15 9.39 -38.89 -0.37 -2.52 16 7 C 0.20 2.11 6.83 -82.26 -0.56 1.55 16 8 C -0.11 -0.63 10.21 36.01 0.37 -0.26 16 9 N -0.51 -6.82 9.63 -10.16 -0.10 -6.92 16 10 C 0.51 7.63 7.17 -322.95 -2.32 5.32 16 11 N -0.46 -7.27 4.77 -175.25 -0.84 -8.11 16 12 C 0.07 1.19 4.76 -3.76 -0.02 1.17 16 13 C 0.06 1.21 5.43 -3.76 -0.02 1.19 16 14 N -0.53 -10.92 4.70 -235.90 -1.11 -12.03 16 15 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 16 C -0.51 -14.25 9.03 -34.44 -0.31 -14.56 16 17 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 20 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 C 0.05 0.88 5.61 -3.77 -0.02 0.86 16 25 C 0.07 1.10 5.46 -3.76 -0.02 1.08 16 26 N -0.51 -7.60 8.50 -10.50 -0.09 -7.69 16 27 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.16 1.28 7.73 -52.49 -0.41 0.88 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.40 7.80 -51.93 -0.41 0.99 16 35 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 2.14 6.79 -51.93 -0.35 1.78 16 38 H 0.03 0.71 7.09 -51.93 -0.37 0.35 16 39 H -0.01 -0.33 7.55 -51.93 -0.39 -0.72 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.23 7.64 -51.93 -0.40 0.84 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.92 364.47 -10.38 -43.29 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.51 Total: -2.48 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.60 Total: 9.52 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -1.36 Total: -61.26 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.73 Total: -11.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.92 -10.38 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.312 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds