Wall clock time and date at job start Tue Mar 31 2020 13:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34641 * 117.00151 * 2 1 4 4 O 1.21384 * 119.99698 * 359.97438 * 3 2 1 5 5 C 1.48389 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.39535 * 120.50206 * 179.97438 * 5 3 2 7 7 C 1.38792 * 118.41665 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.37580 * 180.02562 * 7 6 5 9 9 N 1.32126 * 119.24505 * 0.02562 * 7 6 5 10 10 C 1.32568 * 120.96732 * 0.02562 * 9 7 6 11 11 N 1.38432 * 119.13583 * 179.97438 * 10 9 7 12 12 C 1.46956 * 111.00188 * 180.02562 * 11 10 9 13 13 C 1.53056 * 109.38342 * 183.17849 * 12 11 10 14 14 N 1.46963 * 109.35944 * 301.62902 * 13 12 11 15 15 C 1.46903 * 110.99595 * 183.16796 * 14 13 12 16 16 C 1.50697 * 109.46882 * 66.17766 * 15 14 13 17 17 H 1.08001 * 120.00544 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99793 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00484 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99927 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47267 * 89.99936 * 20 18 16 22 22 H 1.48505 * 109.47062 * 210.00116 * 20 18 16 23 23 H 1.48496 * 109.46947 * 329.99759 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 14 13 12 25 25 C 1.46962 * 110.99863 * 303.80021 * 11 10 9 26 26 N 1.32280 * 121.73127 * 0.27565 * 10 9 7 27 27 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47134 * 299.99841 * 1 2 3 29 29 H 1.08993 * 109.47190 * 60.00093 * 1 2 3 30 30 H 1.08002 * 120.79552 * 0.02562 * 6 5 3 31 31 H 1.09000 * 109.46837 * 269.97798 * 8 7 6 32 32 H 1.09004 * 109.47104 * 29.97446 * 8 7 6 33 33 H 1.08999 * 109.47186 * 149.97586 * 8 7 6 34 34 H 1.09002 * 109.48806 * 303.15576 * 12 11 10 35 35 H 1.09002 * 109.49141 * 63.19849 * 12 11 10 36 36 H 1.08992 * 109.49038 * 61.57437 * 13 12 11 37 37 H 1.08994 * 109.48641 * 181.64718 * 13 12 11 38 38 H 1.09001 * 109.46898 * 186.18135 * 15 14 13 39 39 H 1.08997 * 109.46990 * 306.17810 * 15 14 13 40 40 H 0.96996 * 120.00421 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48806 * 180.71933 * 24 14 13 42 42 H 1.09003 * 109.49203 * 60.65575 * 24 14 13 43 43 H 1.09001 * 109.48625 * 296.77698 * 25 11 10 44 44 H 1.09003 * 109.48941 * 56.82306 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4021 2.2176 -0.0005 5 6 3.5451 1.2772 -0.0006 6 6 4.1895 2.5148 -0.0011 7 6 5.5773 2.5369 -0.0022 8 6 6.3186 3.8490 -0.0022 9 7 6.2410 1.3945 -0.0032 10 6 5.6008 0.2336 -0.0037 11 7 6.3342 -0.9405 -0.0052 12 6 5.4495 -2.1140 -0.0062 13 6 6.2949 -3.3875 0.0722 14 7 7.2211 -3.4283 -1.0681 15 6 7.9993 -4.6743 -1.0698 16 6 7.0786 -5.8412 -1.3174 17 1 6.0211 -5.6741 -1.4597 18 6 7.5861 -7.1224 -1.3622 19 7 6.7827 -8.1409 -1.5788 20 14 9.4151 -7.4116 -1.1154 21 1 9.6931 -7.6183 0.3286 22 1 9.8331 -8.6158 -1.8773 23 1 10.1729 -6.2307 -1.6013 24 6 8.1057 -2.2548 -1.0672 25 6 7.2596 -0.9819 -1.1461 26 7 4.2797 0.1677 -0.0086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.6220 3.4337 -0.0007 31 1 6.4968 4.1655 -1.0299 32 1 5.7226 4.6031 0.5120 33 1 7.2724 3.7275 0.5112 34 1 4.7822 -2.0670 0.8544 35 1 4.8603 -2.1245 -0.9231 36 1 6.8633 -3.3900 1.0022 37 1 5.6421 -4.2597 0.0421 38 1 8.7518 -4.6316 -1.8573 39 1 8.4903 -4.7972 -0.1045 40 1 7.1397 -9.0422 -1.6099 41 1 8.7731 -2.3018 -1.9278 42 1 8.6948 -2.2441 -0.1501 43 1 6.6908 -0.9799 -2.0759 44 1 7.9120 -0.1091 -1.1170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:32 Heat of formation + Delta-G solvation = -19.116470 kcal Electronic energy + Delta-G solvation = -26885.313596 eV Core-core repulsion = 23031.287191 eV Total energy + Delta-G solvation = -3854.026405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71740 -41.43865 -40.12607 -37.79529 -37.03844 -35.67190 -34.64088 -33.03173 -32.10972 -30.30272 -29.70740 -28.97781 -27.17351 -26.03367 -24.74565 -23.79950 -22.87214 -22.18964 -20.87444 -19.77344 -18.95642 -18.75231 -17.93496 -17.71676 -17.66967 -16.69403 -16.61095 -16.54248 -15.99181 -15.68890 -15.62831 -15.31263 -14.89944 -14.84449 -14.47547 -14.43839 -14.29013 -13.80762 -13.53776 -13.27098 -13.18002 -13.11214 -12.83842 -12.54640 -12.40236 -12.29349 -12.20629 -12.11952 -11.93305 -11.90339 -11.76522 -11.67421 -11.38411 -11.15946 -10.77203 -10.51053 -9.63107 -9.10107 -8.26261 -6.29937 -0.84553 -0.24015 1.12748 1.29763 1.37272 1.38610 1.49475 1.90931 2.36444 2.49340 2.70022 3.05076 3.15352 3.29651 3.39317 3.68626 3.80953 4.01435 4.03088 4.09978 4.19279 4.23630 4.28732 4.30355 4.35288 4.55538 4.66538 4.72633 4.76593 4.78125 4.79744 4.83311 4.85736 4.96110 5.02140 5.03643 5.10423 5.28202 5.39307 5.51305 5.54568 5.90916 6.00148 6.28687 6.37817 6.62141 6.76201 6.86597 7.33616 8.90228 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.003102 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.346081 B = 9025.594176 C =10608.541830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.528 3.472 4 O -0.500 6.500 5 C 0.149 3.851 6 C -0.187 4.187 7 C 0.206 3.794 8 C -0.102 4.102 9 N -0.521 5.521 10 C 0.490 3.510 11 N -0.464 5.464 12 C 0.091 3.909 13 C 0.070 3.930 14 N -0.546 5.546 15 C 0.173 3.827 16 C -0.517 4.517 17 H 0.038 0.962 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.246 1.246 24 C 0.054 3.946 25 C 0.083 3.917 26 N -0.534 5.534 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.187 0.813 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.036 0.964 39 H -0.011 1.011 40 H 0.266 0.734 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 26.710 3.956 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.370 3.630 4 O -0.388 6.388 5 C 0.004 3.996 6 C -0.211 4.211 7 C 0.056 3.944 8 C -0.158 4.158 9 N -0.241 5.241 10 C 0.134 3.866 11 N -0.184 5.184 12 C -0.036 4.036 13 C -0.058 4.058 14 N -0.271 5.271 15 C 0.046 3.954 16 C -0.555 4.555 17 H 0.056 0.944 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.771 3.229 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.169 1.169 24 C -0.074 4.074 25 C -0.043 4.043 26 N -0.258 5.258 27 H 0.146 0.854 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.204 0.796 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.007 0.993 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.135 25.871 3.910 26.490 hybrid contribution -0.363 -0.425 0.286 0.628 sum -4.498 25.446 4.196 26.179 Atomic orbital electron populations 1.23717 0.73510 1.06087 1.03350 1.86699 1.25747 1.31173 1.82490 1.20753 0.87520 0.82088 0.72649 1.90825 1.65773 1.36329 1.45858 1.20490 0.91277 0.90352 0.97508 1.22890 0.96278 0.99127 1.02817 1.22472 0.90412 0.94994 0.86568 1.21006 1.00945 0.88274 1.05618 1.67882 1.41518 0.97772 1.16881 1.21041 0.84736 0.90327 0.90475 1.58727 1.18033 0.99593 1.42026 1.21960 0.93068 0.86127 1.02463 1.21999 0.95556 0.96697 0.91573 1.62058 1.19830 1.02594 1.42661 1.19930 0.93139 0.87328 0.94966 1.21249 0.95204 0.90843 1.48200 0.94352 1.25842 1.03002 0.95594 0.94472 1.70050 1.37542 0.99667 1.51626 0.85713 0.79833 0.78601 0.78769 1.19482 1.20837 1.16906 1.22261 0.94497 0.88731 1.01948 1.22258 0.94029 0.99517 0.88483 1.68336 1.07332 1.32600 1.17523 0.85442 0.90776 0.90939 0.79565 0.87375 0.86955 0.89252 0.89170 0.93281 0.94944 0.91058 0.94587 0.99349 0.92458 0.88500 0.94004 0.93653 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.35 -8.52 10.42 -55.50 -0.58 -9.09 16 3 C 0.53 13.09 7.97 70.53 0.56 13.65 16 4 O -0.50 -12.52 16.21 20.21 0.33 -12.19 16 5 C 0.15 3.75 6.79 41.98 0.29 4.04 16 6 C -0.19 -3.44 9.39 22.72 0.21 -3.23 16 7 C 0.21 3.67 6.83 42.65 0.29 3.96 16 8 C -0.10 -0.80 10.21 71.24 0.73 -0.08 16 9 N -0.52 -12.88 9.63 -186.06 -1.79 -14.67 16 10 C 0.49 14.43 7.17 261.54 1.88 16.31 16 11 N -0.46 -14.57 4.77 -708.38 -3.38 -17.95 16 12 C 0.09 3.14 4.76 86.31 0.41 3.55 16 13 C 0.07 2.80 5.43 86.31 0.47 3.27 16 14 N -0.55 -22.70 4.70 -900.26 -4.23 -26.93 16 15 C 0.17 8.23 3.79 85.56 0.32 8.56 16 16 C -0.52 -29.80 9.03 25.60 0.23 -29.57 16 17 H 0.04 2.47 7.37 -2.91 -0.02 2.45 16 18 C 0.01 0.47 5.47 84.65 0.46 0.94 16 19 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 20 Si 0.95 43.75 27.47 68.60 1.88 45.63 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.25 -10.42 6.54 99.48 0.65 -9.76 16 24 C 0.05 1.74 5.61 86.31 0.48 2.23 16 25 C 0.08 2.40 5.46 86.31 0.47 2.87 16 26 N -0.53 -15.94 8.50 -187.14 -1.59 -17.53 16 27 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.19 2.33 7.73 -2.91 -0.02 2.31 16 31 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.11 0.33 8.10 -2.38 -0.02 0.31 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 3.01 7.80 -2.39 -0.02 2.99 16 35 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 3.22 6.79 -2.39 -0.02 3.21 16 38 H 0.04 1.67 7.09 -2.39 -0.02 1.65 16 39 H -0.01 -0.52 7.55 -2.39 -0.02 -0.54 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.10 2.84 8.07 -2.39 -0.02 2.82 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 2.80 7.64 -2.39 -0.02 2.78 16 Total: -1.00 -73.61 364.47 -0.11 -73.71 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.95 Total: 9.97 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 8.01 Total: 28.09 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -10.70 Total: -136.12 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.25 Total: -21.29 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -73.61 -0.11 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.597 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds