Wall clock time and date at job start Tue Mar 31 2020 12:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38223 * 120.40645 * 2 1 4 4 C 1.39517 * 118.33165 * 179.97438 * 3 2 1 5 5 N 1.38927 * 120.52960 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99925 * 185.54205 * 5 4 3 7 7 O 1.21341 * 120.00227 * 356.63275 * 6 5 4 8 8 C 1.49383 * 119.99301 * 176.63732 * 6 5 4 9 9 O 1.21355 * 120.00732 * 354.43936 * 8 6 5 10 10 N 1.34779 * 119.99844 * 174.44602 * 8 6 5 11 11 C 1.46508 * 119.99787 * 354.55677 * 10 8 6 12 12 C 1.50698 * 109.46889 * 85.18256 * 11 10 8 13 13 H 1.07998 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99440 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00603 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47089 * 59.99637 * 16 14 12 18 18 H 1.48499 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46804 * 299.99331 * 16 14 12 20 20 C 1.46498 * 120.00308 * 174.56035 * 10 8 6 21 21 C 1.52996 * 109.47188 * 303.18681 * 20 10 8 22 22 C 1.52999 * 109.47112 * 63.18718 * 20 10 8 23 23 N 1.32946 * 118.95152 * 0.25182 * 4 3 2 24 24 C 1.31737 * 120.69835 * 359.48682 * 23 4 3 25 25 C 1.50697 * 119.08297 * 180.23991 * 24 23 4 26 26 N 1.31806 * 121.83484 * 0.52858 * 24 23 4 27 27 H 1.09007 * 109.47177 * 90.00250 * 1 2 3 28 28 H 1.09003 * 109.47086 * 210.00150 * 1 2 3 29 29 H 1.08998 * 109.46841 * 330.00458 * 1 2 3 30 30 H 1.08000 * 120.83475 * 359.95406 * 3 2 1 31 31 H 0.97003 * 119.99208 * 5.81814 * 5 4 3 32 32 H 1.08997 * 109.46889 * 205.18314 * 11 10 8 33 33 H 1.09001 * 109.47140 * 325.17872 * 11 10 8 34 34 H 0.96996 * 120.00356 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47225 * 183.18577 * 20 10 8 36 36 H 1.08996 * 109.47105 * 67.23398 * 21 20 10 37 37 H 1.08994 * 109.47308 * 187.23695 * 21 20 10 38 38 H 1.09003 * 109.46821 * 307.24037 * 21 20 10 39 39 H 1.08999 * 109.47461 * 63.80321 * 22 20 10 40 40 H 1.09004 * 109.47165 * 183.80606 * 22 20 10 41 41 H 1.09008 * 109.47146 * 303.80580 * 22 20 10 42 42 H 1.08998 * 109.47582 * 270.27960 * 25 24 23 43 43 H 1.08998 * 109.46961 * 30.28133 * 25 24 23 44 44 H 1.09006 * 109.46963 * 150.28028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2067 1.1921 0.0000 4 6 3.6009 1.1416 0.0005 5 7 4.3495 2.3119 0.0000 6 6 5.6913 2.2535 -0.1121 7 8 6.2506 1.1774 -0.1512 8 6 6.4898 3.5137 -0.1883 9 8 5.9261 4.5866 -0.2510 10 7 7.8365 3.4592 -0.1876 11 6 8.5176 2.1769 0.0077 12 6 8.6374 1.4651 -1.3152 13 1 8.2451 1.9221 -2.2116 14 6 9.2470 0.2302 -1.3807 15 7 9.7242 -0.3265 -0.2890 16 14 9.3962 -0.6518 -3.0207 17 1 10.1800 0.1858 -3.9637 18 1 10.0864 -1.9516 -2.8226 19 1 8.0412 -0.8905 -3.5794 20 6 8.6193 4.6822 -0.3820 21 6 8.2176 5.3401 -1.7036 22 6 8.3491 5.6495 0.7722 23 7 4.2019 -0.0442 -0.0041 24 6 3.4956 -1.1562 0.0011 25 6 4.2145 -2.4807 0.0011 26 7 2.1776 -1.1427 0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6870 2.1389 -0.0007 31 1 3.9066 3.1708 0.0845 32 1 9.5123 2.3525 0.4173 33 1 7.9429 1.5620 0.7004 34 1 10.1534 -1.1951 -0.3352 35 1 9.6804 4.4342 -0.4074 36 1 7.1925 5.7036 -1.6316 37 1 8.8857 6.1759 -1.9112 38 1 8.2882 4.6095 -2.5094 39 1 8.6974 5.2077 1.7057 40 1 8.8784 6.5855 0.5933 41 1 7.2787 5.8446 0.8397 42 1 4.3883 -2.7999 -1.0265 43 1 5.1698 -2.3755 0.5153 44 1 3.6054 -3.2247 0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602032719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:12 Heat of formation + Delta-G solvation = 2.036170 kcal Electronic energy + Delta-G solvation = -27849.663124 eV Core-core repulsion = 23996.553966 eV Total energy + Delta-G solvation = -3853.109158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20156 -40.08975 -38.22577 -35.98341 -35.03331 -34.24553 -32.97404 -31.66723 -31.38603 -29.09496 -28.03625 -27.03038 -26.76671 -25.17541 -23.01434 -22.33508 -22.26738 -20.90858 -19.33495 -17.35647 -17.30503 -16.57826 -16.28163 -15.69739 -15.48559 -15.31794 -14.98748 -14.79774 -14.28952 -14.18848 -13.78877 -13.68890 -13.35933 -13.12467 -12.86133 -12.80990 -12.52332 -12.26988 -12.18184 -12.05837 -11.85121 -11.57766 -11.54246 -11.07982 -11.00067 -10.93158 -10.81484 -10.74902 -10.60434 -10.22460 -9.80300 -9.66528 -9.60663 -9.20538 -8.59425 -8.47437 -8.21519 -7.87513 -5.99673 -4.01107 1.02484 1.24433 2.22225 2.62984 3.34802 3.38549 3.42532 3.74618 3.81712 4.06380 4.07089 4.30807 4.48552 4.72771 4.97148 5.06705 5.17223 5.37096 5.38349 5.39563 5.44866 5.53429 5.55814 5.70527 5.74753 5.80713 5.90763 5.97606 6.05429 6.07538 6.23240 6.31352 6.35410 6.57436 6.67503 6.73738 6.77256 6.93743 7.33777 7.38951 7.54935 7.88054 8.07903 8.19863 8.27858 8.47922 8.66203 8.97082 9.61284 11.09407 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.005238 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.723875 B = 5343.764032 C = 7397.081986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.194 3.806 3 C -0.279 4.279 4 C 0.420 3.580 5 N -0.644 5.644 6 C 0.467 3.533 7 O -0.366 6.366 8 C 0.511 3.489 9 O -0.557 6.557 10 N -0.554 5.554 11 C 0.231 3.769 12 C -0.511 4.511 13 H 0.052 0.948 14 C 0.073 3.927 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.144 3.856 21 C -0.165 4.165 22 C -0.167 4.167 23 N -0.510 5.510 24 C 0.354 3.646 25 C -0.084 4.084 26 N -0.551 5.551 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.424 0.576 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 4.727 2.142 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.049 3.951 3 C -0.305 4.305 4 C 0.179 3.821 5 N -0.294 5.294 6 C 0.247 3.753 7 O -0.225 6.225 8 C 0.294 3.706 9 O -0.439 6.439 10 N -0.284 5.284 11 C 0.112 3.888 12 C -0.550 4.550 13 H 0.070 0.930 14 C -0.130 4.130 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.204 1.204 20 C 0.041 3.959 21 C -0.223 4.223 22 C -0.225 4.225 23 N -0.232 5.232 24 C 0.086 3.914 25 C -0.143 4.143 26 N -0.271 5.271 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.282 3.510 2.131 12.950 hybrid contribution -0.418 0.710 -0.988 1.286 sum -12.700 4.220 1.143 13.432 Atomic orbital electron populations 1.20727 0.87977 1.03752 1.03444 1.21379 0.97181 0.87536 0.89024 1.21988 0.93117 1.01130 1.14297 1.18683 0.87793 0.86916 0.88696 1.43443 1.07361 1.07379 1.71233 1.20735 0.81991 0.91726 0.80894 1.91127 1.67449 1.28923 1.35041 1.19668 0.83780 0.88039 0.79155 1.90590 1.71101 1.29845 1.52402 1.48396 1.04043 1.11241 1.64705 1.19926 0.92818 0.77445 0.98587 1.21092 1.37748 1.03187 0.92957 0.92952 1.24753 0.95247 0.96711 0.96275 1.69891 1.38813 1.17009 1.27163 0.86662 0.78149 0.78947 0.84225 1.20502 1.21217 1.20354 1.21049 0.95781 0.84141 0.94954 1.22153 1.02798 1.00418 0.96907 1.22215 1.03769 0.98615 0.97930 1.68397 1.40006 0.96847 1.17945 1.23202 0.85977 0.94324 0.87876 1.20576 1.00348 0.89344 1.04020 1.68115 1.09724 1.29964 1.19270 0.89898 0.90043 0.90338 0.83786 0.73809 0.94901 0.92250 0.92824 0.89061 0.90969 0.92434 0.92233 0.92931 0.92249 0.90618 0.89617 0.88937 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.22 36.01 0.37 -0.48 16 2 C 0.19 2.52 6.82 -82.31 -0.56 1.96 16 3 C -0.28 -3.66 9.72 -39.11 -0.38 -4.04 16 4 C 0.42 7.15 7.45 -154.48 -1.15 6.00 16 5 N -0.64 -10.78 5.37 -11.71 -0.06 -10.84 16 6 C 0.47 9.69 7.65 -11.62 -0.09 9.60 16 7 O -0.37 -9.01 10.47 5.50 0.06 -8.95 16 8 C 0.51 10.39 7.10 -11.62 -0.08 10.31 16 9 O -0.56 -10.75 12.79 5.49 0.07 -10.68 16 10 N -0.55 -11.60 2.42 -168.00 -0.41 -12.01 16 11 C 0.23 5.72 4.73 -5.19 -0.02 5.70 16 12 C -0.51 -13.92 7.76 -34.44 -0.27 -14.19 16 13 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 14 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.14 2.54 3.27 -67.93 -0.22 2.32 16 21 C -0.16 -2.71 8.95 37.16 0.33 -2.38 16 22 C -0.17 -2.54 9.21 37.16 0.34 -2.20 16 23 N -0.51 -10.03 7.94 -9.91 -0.08 -10.11 16 24 C 0.35 6.11 7.64 -157.23 -1.20 4.91 16 25 C -0.08 -1.24 10.32 36.00 0.37 -0.87 16 26 N -0.55 -8.51 10.27 -7.05 -0.07 -8.58 16 27 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.42 5.69 8.22 -40.82 -0.34 5.36 16 32 H 0.03 0.84 7.85 -51.93 -0.41 0.43 16 33 H 0.06 1.61 5.91 -51.93 -0.31 1.31 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.09 1.60 7.76 -51.93 -0.40 1.20 16 36 H 0.07 1.24 6.36 -51.93 -0.33 0.91 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.24 6.13 -51.92 -0.32 0.92 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -32.80 367.47 -8.20 -41.00 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.29 Total: 4.18 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: -2.66 Total: 18.56 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.12 Total: -66.58 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.13 Total: -19.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.80 -8.20 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602032719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.033 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds