Wall clock time and date at job start Tue Mar 31 2020 12:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38223 * 120.40645 * 2 1 4 4 C 1.39517 * 118.33165 * 179.97438 * 3 2 1 5 5 N 1.38927 * 120.52960 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99925 * 185.54205 * 5 4 3 7 7 O 1.21341 * 120.00227 * 356.63275 * 6 5 4 8 8 C 1.49383 * 119.99301 * 176.63732 * 6 5 4 9 9 O 1.21355 * 120.00732 * 354.43936 * 8 6 5 10 10 N 1.34779 * 119.99844 * 174.44602 * 8 6 5 11 11 C 1.46508 * 119.99787 * 354.55677 * 10 8 6 12 12 C 1.50698 * 109.46889 * 85.18256 * 11 10 8 13 13 H 1.07998 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99440 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00603 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47089 * 59.99637 * 16 14 12 18 18 H 1.48499 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46804 * 299.99331 * 16 14 12 20 20 C 1.46498 * 120.00308 * 174.56035 * 10 8 6 21 21 C 1.52996 * 109.47188 * 303.18681 * 20 10 8 22 22 C 1.52999 * 109.47112 * 63.18718 * 20 10 8 23 23 N 1.32946 * 118.95152 * 0.25182 * 4 3 2 24 24 C 1.31737 * 120.69835 * 359.48682 * 23 4 3 25 25 C 1.50697 * 119.08297 * 180.23991 * 24 23 4 26 26 N 1.31806 * 121.83484 * 0.52858 * 24 23 4 27 27 H 1.09007 * 109.47177 * 90.00250 * 1 2 3 28 28 H 1.09003 * 109.47086 * 210.00150 * 1 2 3 29 29 H 1.08998 * 109.46841 * 330.00458 * 1 2 3 30 30 H 1.08000 * 120.83475 * 359.95406 * 3 2 1 31 31 H 0.97003 * 119.99208 * 5.81814 * 5 4 3 32 32 H 1.08997 * 109.46889 * 205.18314 * 11 10 8 33 33 H 1.09001 * 109.47140 * 325.17872 * 11 10 8 34 34 H 0.96996 * 120.00356 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47225 * 183.18577 * 20 10 8 36 36 H 1.08996 * 109.47105 * 67.23398 * 21 20 10 37 37 H 1.08994 * 109.47308 * 187.23695 * 21 20 10 38 38 H 1.09003 * 109.46821 * 307.24037 * 21 20 10 39 39 H 1.08999 * 109.47461 * 63.80321 * 22 20 10 40 40 H 1.09004 * 109.47165 * 183.80606 * 22 20 10 41 41 H 1.09008 * 109.47146 * 303.80580 * 22 20 10 42 42 H 1.08998 * 109.47582 * 270.27960 * 25 24 23 43 43 H 1.08998 * 109.46961 * 30.28133 * 25 24 23 44 44 H 1.09006 * 109.46963 * 150.28028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2067 1.1921 0.0000 4 6 3.6009 1.1416 0.0005 5 7 4.3495 2.3119 0.0000 6 6 5.6913 2.2535 -0.1121 7 8 6.2506 1.1774 -0.1512 8 6 6.4898 3.5137 -0.1883 9 8 5.9261 4.5866 -0.2510 10 7 7.8365 3.4592 -0.1876 11 6 8.5176 2.1769 0.0077 12 6 8.6374 1.4651 -1.3152 13 1 8.2451 1.9221 -2.2116 14 6 9.2470 0.2302 -1.3807 15 7 9.7242 -0.3265 -0.2890 16 14 9.3962 -0.6518 -3.0207 17 1 10.1800 0.1858 -3.9637 18 1 10.0864 -1.9516 -2.8226 19 1 8.0412 -0.8905 -3.5794 20 6 8.6193 4.6822 -0.3820 21 6 8.2176 5.3401 -1.7036 22 6 8.3491 5.6495 0.7722 23 7 4.2019 -0.0442 -0.0041 24 6 3.4956 -1.1562 0.0011 25 6 4.2145 -2.4807 0.0011 26 7 2.1776 -1.1427 0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6870 2.1389 -0.0007 31 1 3.9066 3.1708 0.0845 32 1 9.5123 2.3525 0.4173 33 1 7.9429 1.5620 0.7004 34 1 10.1534 -1.1951 -0.3352 35 1 9.6804 4.4342 -0.4074 36 1 7.1925 5.7036 -1.6316 37 1 8.8857 6.1759 -1.9112 38 1 8.2882 4.6095 -2.5094 39 1 8.6974 5.2077 1.7057 40 1 8.8784 6.5855 0.5933 41 1 7.2787 5.8446 0.8397 42 1 4.3883 -2.7999 -1.0265 43 1 5.1698 -2.3755 0.5153 44 1 3.6054 -3.2247 0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602032719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:11 Heat of formation + Delta-G solvation = -18.879766 kcal Electronic energy + Delta-G solvation = -27850.570107 eV Core-core repulsion = 23996.553966 eV Total energy + Delta-G solvation = -3854.016141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50494 -41.58805 -39.74806 -37.59149 -36.45692 -35.34337 -34.93101 -33.08601 -32.96918 -30.06534 -29.20973 -28.94222 -28.04783 -26.67176 -24.83237 -23.83453 -23.46171 -22.24488 -20.76499 -18.91813 -18.73076 -18.53809 -17.68526 -17.24423 -16.93126 -16.58433 -16.41915 -16.24599 -16.13553 -15.53736 -15.15702 -15.11434 -14.60920 -14.36466 -14.22175 -14.03438 -13.90513 -13.66549 -13.45953 -13.32493 -13.27022 -13.04694 -12.84237 -12.74278 -12.72719 -12.57871 -12.24850 -12.19103 -12.13055 -11.76265 -11.67133 -11.44697 -10.83557 -10.65831 -10.47000 -9.83829 -9.80992 -9.59449 -8.13169 -6.20201 -0.22303 0.06550 0.68620 1.21537 1.35618 1.39161 1.44977 2.22069 2.33895 2.46877 2.78315 2.97426 3.08475 3.21278 3.40832 3.70619 4.02369 4.08884 4.19899 4.22041 4.33952 4.40955 4.63142 4.63844 4.66329 4.77621 4.80064 4.81268 4.88279 4.91886 4.98641 5.04786 5.09825 5.17274 5.23637 5.28905 5.40586 5.56735 5.65376 5.70047 5.80545 6.10922 6.22503 6.34536 6.75369 6.82548 7.07122 7.25554 7.45079 8.95168 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.005238 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.723875 B = 5343.764032 C = 7397.081986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.187 3.813 3 C -0.258 4.258 4 C 0.388 3.612 5 N -0.629 5.629 6 C 0.467 3.533 7 O -0.416 6.416 8 C 0.511 3.489 9 O -0.544 6.544 10 N -0.560 5.560 11 C 0.252 3.748 12 C -0.511 4.511 13 H 0.041 0.959 14 C 0.026 3.974 15 N -0.920 5.920 16 Si 0.947 3.053 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.287 1.287 20 C 0.131 3.869 21 C -0.155 4.155 22 C -0.156 4.156 23 N -0.559 5.559 24 C 0.332 3.668 25 C -0.080 4.080 26 N -0.553 5.553 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.188 0.812 31 H 0.439 0.561 32 H 0.021 0.979 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 6.300 1.569 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 C -0.283 4.283 4 C 0.150 3.850 5 N -0.281 5.281 6 C 0.247 3.753 7 O -0.279 6.279 8 C 0.293 3.707 9 O -0.425 6.425 10 N -0.291 5.291 11 C 0.131 3.869 12 C -0.550 4.550 13 H 0.059 0.941 14 C -0.174 4.174 15 N -0.560 5.560 16 Si 0.773 3.227 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.213 1.213 20 C 0.030 3.970 21 C -0.213 4.213 22 C -0.214 4.214 23 N -0.281 5.281 24 C 0.065 3.935 25 C -0.139 4.139 26 N -0.273 5.273 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.205 0.795 31 H 0.280 0.720 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.500 5.141 1.556 15.463 hybrid contribution 0.087 0.283 -0.783 0.838 sum -14.413 5.424 0.772 15.420 Atomic orbital electron populations 1.20889 0.84074 1.05459 1.04927 1.22286 0.99465 0.86713 0.87277 1.22413 0.91178 1.03211 1.11480 1.19058 0.89356 0.86216 0.90411 1.43193 1.06062 1.08376 1.70445 1.20920 0.83249 0.91172 0.80006 1.91114 1.68702 1.30263 1.37846 1.19684 0.83664 0.88214 0.79134 1.90583 1.70780 1.29310 1.51875 1.48347 1.04474 1.11040 1.65234 1.19379 0.91832 0.78767 0.96875 1.21241 1.36898 1.03398 0.93434 0.94070 1.25444 0.95274 0.97509 0.99150 1.69990 1.39829 1.17348 1.28814 0.85802 0.77625 0.78378 0.80903 1.19122 1.20384 1.21343 1.21381 0.95406 0.83438 0.96821 1.22078 1.03230 1.00719 0.95263 1.22120 1.03394 0.99195 0.96645 1.68281 1.42091 0.98400 1.19377 1.23496 0.86922 0.94340 0.88782 1.20578 0.99659 0.89436 1.04192 1.68204 1.08770 1.31320 1.19015 0.88243 0.89677 0.87344 0.79463 0.72004 0.96059 0.94913 0.92839 0.89203 0.91605 0.89011 0.94446 0.93136 0.89013 0.91701 0.89387 0.91113 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.22 71.24 0.73 -0.49 16 2 C 0.19 4.39 6.82 42.46 0.29 4.68 16 3 C -0.26 -6.12 9.72 22.57 0.22 -5.90 16 4 C 0.39 13.14 7.45 133.02 0.99 14.13 16 5 N -0.63 -20.98 5.37 -309.32 -1.66 -22.64 16 6 C 0.47 19.91 7.65 87.25 0.67 20.58 16 7 O -0.42 -21.56 10.47 -3.22 -0.03 -21.59 16 8 C 0.51 20.96 7.10 87.25 0.62 21.58 16 9 O -0.54 -20.50 12.79 -3.26 -0.04 -20.54 16 10 N -0.56 -23.91 2.42 -803.79 -1.94 -25.85 16 11 C 0.25 13.00 4.73 85.63 0.40 13.40 16 12 C -0.51 -28.75 7.76 25.60 0.20 -28.55 16 13 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 14 C 0.03 1.47 5.46 84.66 0.46 1.94 16 15 N -0.92 -54.99 13.29 21.45 0.28 -54.71 16 16 Si 0.95 46.00 29.54 68.60 2.03 48.02 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 20 C 0.13 4.55 3.27 44.99 0.15 4.70 16 21 C -0.16 -4.88 8.95 71.98 0.64 -4.24 16 22 C -0.16 -4.45 9.21 71.98 0.66 -3.79 16 23 N -0.56 -22.72 7.94 -185.26 -1.47 -24.19 16 24 C 0.33 11.70 7.64 138.76 1.06 12.76 16 25 C -0.08 -2.45 10.32 71.24 0.73 -1.72 16 26 N -0.55 -16.53 10.27 -176.23 -1.81 -18.34 16 27 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.11 0.77 8.09 -2.39 -0.02 0.75 16 30 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.44 11.22 8.22 -92.71 -0.76 10.45 16 32 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 33 H 0.03 1.90 5.91 -2.39 -0.01 1.88 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.09 3.12 7.76 -2.39 -0.02 3.10 16 36 H 0.06 2.15 6.36 -2.39 -0.02 2.13 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.01 6.13 -2.38 -0.01 1.99 16 42 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -74.58 367.47 3.45 -71.13 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.27 Total: 19.63 kcal Atomic # 6 Polarization: 41.26 SS G_CDS: 7.83 Total: 49.09 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -6.60 Total: -145.73 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.08 Total: -42.14 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.58 3.45 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602032719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.251 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds