Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46843 * 110.99561 * 294.20651 * 13 12 10 15 15 C 1.53038 * 109.52070 * 174.16043 * 14 13 12 16 16 C 1.53125 * 109.27759 * 59.18160 * 15 14 13 17 17 C 1.53118 * 109.15784 * 302.34522 * 16 15 14 18 18 C 1.46843 * 110.99818 * 169.99758 * 13 12 10 19 19 H 1.09001 * 109.46208 * 65.82458 * 18 13 12 20 20 C 1.50695 * 109.46518 * 305.84387 * 18 13 12 21 21 N 1.29952 * 126.28927 * 314.69108 * 20 18 13 22 22 O 1.21298 * 110.25272 * 179.84479 * 21 20 18 23 23 C 1.33639 * 109.81011 * 0.42257 * 22 21 20 24 24 C 1.50701 * 126.54997 * 179.72086 * 23 22 21 25 25 C 1.53002 * 117.49683 * 8.77053 * 24 23 22 26 26 C 1.52994 * 117.50038 * 300.11138 * 24 23 22 27 27 N 1.31129 * 106.90043 * 359.73880 * 23 22 21 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 1.08997 * 109.46379 * 294.17496 * 14 13 12 33 33 H 1.09000 * 109.46577 * 54.15254 * 14 13 12 34 34 H 1.09001 * 109.50668 * 299.24264 * 15 14 13 35 35 H 1.09001 * 109.53577 * 179.13941 * 15 14 13 36 36 H 1.08998 * 109.52168 * 182.44422 * 16 15 14 37 37 H 1.08996 * 109.52404 * 62.25058 * 16 15 14 38 38 H 1.08995 * 109.50555 * 297.71216 * 17 16 15 39 39 H 1.08995 * 109.50409 * 177.59757 * 17 16 15 40 40 H 1.09004 * 115.55097 * 154.44012 * 24 23 22 41 41 H 1.08997 * 117.50267 * 359.97438 * 25 24 23 42 42 H 1.09004 * 117.49280 * 145.02551 * 25 24 23 43 43 H 1.08999 * 117.50366 * 214.98434 * 26 24 23 44 44 H 1.09007 * 117.49691 * 359.97246 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9686 -6.0086 -1.2588 15 6 4.0485 -7.0893 -1.1690 16 6 3.3853 -8.4476 -0.9245 17 6 2.5505 -8.3758 0.3571 18 6 1.5141 -7.2578 0.2231 19 1 0.8535 -7.4737 -0.6166 20 6 0.7033 -7.1706 1.4904 21 7 1.0989 -6.6732 2.6239 22 8 0.2116 -6.7478 3.4476 23 6 -0.8638 -7.3255 2.9039 24 6 -2.1743 -7.6094 3.5917 25 6 -2.3802 -7.0222 4.9895 26 6 -2.1452 -8.5250 4.8171 27 7 -0.5608 -7.5985 1.6576 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 2.3012 -6.2304 -2.0915 33 1 3.4385 -5.0382 -1.4186 34 1 4.7245 -6.8608 -0.3450 35 1 4.6104 -7.1215 -2.1025 36 1 4.1531 -9.2137 -0.8167 37 1 2.7390 -8.6943 -1.7668 38 1 3.2029 -8.1676 1.2051 39 1 2.0417 -9.3269 0.5137 40 1 -3.0447 -7.6705 2.9383 41 1 -1.5677 -6.4311 5.4118 42 1 -3.3861 -6.6976 5.2558 43 1 -2.9965 -9.1883 4.9701 44 1 -1.1782 -8.9224 5.1255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = 66.862538 kcal Electronic energy + Delta-G solvation = -27428.767672 eV Core-core repulsion = 23578.469596 eV Total energy + Delta-G solvation = -3850.298076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.56444 -39.45396 -37.77856 -37.64864 -35.67132 -34.01984 -33.22939 -32.30202 -31.19611 -30.37388 -27.55663 -25.24335 -24.88300 -24.39192 -22.93479 -22.82600 -22.64708 -20.64308 -19.43527 -19.13093 -18.06396 -17.83901 -17.50792 -16.53235 -16.09421 -15.63567 -15.01727 -14.77103 -14.64532 -14.49009 -13.94511 -13.84089 -13.64635 -13.30214 -13.08362 -12.82460 -12.59689 -12.26957 -12.06702 -11.99752 -11.88325 -11.57399 -11.48630 -11.29917 -11.14446 -11.03442 -11.00103 -10.92323 -10.66632 -10.49335 -10.38378 -10.27348 -10.19363 -9.60003 -9.44310 -8.44051 -7.96780 -7.86347 -6.39308 -3.80116 1.15860 2.20382 2.71739 3.19183 3.26917 3.27757 3.34001 3.50058 3.88200 3.91911 4.06902 4.23750 4.33340 4.46676 4.67192 4.81635 4.90734 5.00046 5.07715 5.17588 5.22580 5.26961 5.32918 5.37409 5.43111 5.58602 5.65553 5.67021 5.68559 5.71042 5.79868 5.82504 5.93282 5.98038 6.02018 6.06207 6.19545 6.28677 6.47771 6.54822 7.23138 7.33639 7.57366 8.08178 8.28226 8.63787 9.20062 9.56148 10.07989 10.78607 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004128 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.556409 B = 6781.778416 C = 9134.435275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.448 3.552 11 O -0.573 6.573 12 C 0.048 3.952 13 N -0.502 5.502 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.105 4.105 18 C 0.177 3.823 19 H 0.068 0.932 20 C 0.175 3.825 21 N -0.346 5.346 22 O 0.081 5.919 23 C 0.197 3.803 24 C -0.077 4.077 25 C -0.158 4.158 26 C -0.155 4.155 27 N -0.476 5.476 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.025 0.975 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.148 0.852 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -19.003 4.963 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.233 3.767 11 O -0.457 6.457 12 C -0.084 4.084 13 N -0.228 5.228 14 C -0.072 4.072 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.143 4.143 18 C 0.067 3.933 19 H 0.086 0.914 20 C -0.098 4.098 21 N -0.050 5.050 22 O 0.019 5.981 23 C -0.023 4.023 24 C -0.097 4.097 25 C -0.196 4.196 26 C -0.193 4.193 27 N -0.210 5.210 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.802 -18.566 5.023 19.606 hybrid contribution -1.134 0.805 -0.575 1.505 sum -4.936 -17.761 4.448 18.963 Atomic orbital electron populations 1.69618 1.05957 1.28113 1.50702 1.25258 0.95624 0.99695 0.97355 0.85856 0.79270 0.80806 0.78355 1.20422 1.20920 1.19381 1.19703 0.93361 0.82141 1.47502 0.87866 1.41851 1.09133 1.04569 1.64500 1.19572 0.88347 0.84314 0.84422 1.90479 1.13493 1.86779 1.54984 1.21838 0.93961 0.91612 1.00952 1.61489 1.24507 0.99689 1.37121 1.22310 0.94989 1.02243 0.87702 1.21587 0.98058 0.93424 1.02234 1.21586 0.99020 0.98098 0.96823 1.21592 0.96999 0.95989 0.99769 1.19859 0.92558 0.92241 0.88682 0.91424 1.25593 0.89660 0.97910 0.96640 1.74821 1.10249 1.19211 1.00759 1.85349 1.18024 1.57852 1.36866 1.27597 0.92615 0.93471 0.88575 1.20263 0.89752 1.08573 0.91114 1.23198 1.04831 0.96328 0.95222 1.23166 1.04565 0.93837 0.97731 1.71803 1.12063 1.22666 1.14447 0.91903 0.77615 0.90581 0.93382 0.95687 0.87246 0.90674 0.91478 0.91483 0.92114 0.90441 0.91468 0.83431 0.87278 0.86848 0.86955 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.05 55.50 0.72 -24.43 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.56 -15.01 5.29 -10.96 -0.06 -15.07 16 10 C 0.45 11.23 7.46 -10.98 -0.08 11.15 16 11 O -0.57 -15.93 13.90 5.55 0.08 -15.85 16 12 C 0.05 0.97 5.24 -4.97 -0.03 0.95 16 13 N -0.50 -9.27 4.22 -229.52 -0.97 -10.24 16 14 C 0.05 0.92 5.10 -3.84 -0.02 0.90 16 15 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.12 -1.35 6.00 -26.61 -0.16 -1.51 16 17 C -0.10 -1.38 5.35 -26.65 -0.14 -1.52 16 18 C 0.18 2.76 2.39 -68.88 -0.16 2.60 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 20 C 0.18 2.89 5.25 -156.37 -0.82 2.07 16 21 N -0.35 -6.13 11.82 30.90 0.37 -5.76 16 22 O 0.08 1.22 11.08 18.11 0.20 1.42 16 23 C 0.20 2.57 7.97 -13.06 -0.10 2.47 16 24 C -0.08 -0.65 6.33 -91.77 -0.58 -1.23 16 25 C -0.16 -1.03 10.18 -26.69 -0.27 -1.31 16 26 C -0.15 -0.93 10.24 -26.70 -0.27 -1.20 16 27 N -0.48 -7.20 11.55 -9.87 -0.11 -7.31 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.39 10.09 7.90 -40.82 -0.32 9.76 16 30 H 0.08 1.58 6.31 -51.93 -0.33 1.25 16 31 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 2.23 5.78 -51.93 -0.30 1.93 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.11 0.81 8.01 -51.93 -0.42 0.39 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.39 363.86 -8.73 -42.13 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.37 Total: 9.70 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.05 Total: 3.47 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.05 Total: -62.80 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.28 Total: -14.43 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.39 -8.73 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.990 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds