Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46843 * 110.99561 * 294.20651 * 13 12 10 15 15 C 1.53038 * 109.52070 * 174.16043 * 14 13 12 16 16 C 1.53125 * 109.27759 * 59.18160 * 15 14 13 17 17 C 1.53118 * 109.15784 * 302.34522 * 16 15 14 18 18 C 1.46843 * 110.99818 * 169.99758 * 13 12 10 19 19 H 1.09001 * 109.46208 * 65.82458 * 18 13 12 20 20 C 1.50695 * 109.46518 * 305.84387 * 18 13 12 21 21 N 1.29952 * 126.28927 * 314.69108 * 20 18 13 22 22 O 1.21298 * 110.25272 * 179.84479 * 21 20 18 23 23 C 1.33639 * 109.81011 * 0.42257 * 22 21 20 24 24 C 1.50701 * 126.54997 * 179.72086 * 23 22 21 25 25 C 1.53002 * 117.49683 * 8.77053 * 24 23 22 26 26 C 1.52994 * 117.50038 * 300.11138 * 24 23 22 27 27 N 1.31129 * 106.90043 * 359.73880 * 23 22 21 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 1.08997 * 109.46379 * 294.17496 * 14 13 12 33 33 H 1.09000 * 109.46577 * 54.15254 * 14 13 12 34 34 H 1.09001 * 109.50668 * 299.24264 * 15 14 13 35 35 H 1.09001 * 109.53577 * 179.13941 * 15 14 13 36 36 H 1.08998 * 109.52168 * 182.44422 * 16 15 14 37 37 H 1.08996 * 109.52404 * 62.25058 * 16 15 14 38 38 H 1.08995 * 109.50555 * 297.71216 * 17 16 15 39 39 H 1.08995 * 109.50409 * 177.59757 * 17 16 15 40 40 H 1.09004 * 115.55097 * 154.44012 * 24 23 22 41 41 H 1.08997 * 117.50267 * 359.97438 * 25 24 23 42 42 H 1.09004 * 117.49280 * 145.02551 * 25 24 23 43 43 H 1.08999 * 117.50366 * 214.98434 * 26 24 23 44 44 H 1.09007 * 117.49691 * 359.97246 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9686 -6.0086 -1.2588 15 6 4.0485 -7.0893 -1.1690 16 6 3.3853 -8.4476 -0.9245 17 6 2.5505 -8.3758 0.3571 18 6 1.5141 -7.2578 0.2231 19 1 0.8535 -7.4737 -0.6166 20 6 0.7033 -7.1706 1.4904 21 7 1.0989 -6.6732 2.6239 22 8 0.2116 -6.7478 3.4476 23 6 -0.8638 -7.3255 2.9039 24 6 -2.1743 -7.6094 3.5917 25 6 -2.3802 -7.0222 4.9895 26 6 -2.1452 -8.5250 4.8171 27 7 -0.5608 -7.5985 1.6576 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 2.3012 -6.2304 -2.0915 33 1 3.4385 -5.0382 -1.4186 34 1 4.7245 -6.8608 -0.3450 35 1 4.6104 -7.1215 -2.1025 36 1 4.1531 -9.2137 -0.8167 37 1 2.7390 -8.6943 -1.7668 38 1 3.2029 -8.1676 1.2051 39 1 2.0417 -9.3269 0.5137 40 1 -3.0447 -7.6705 2.9383 41 1 -1.5677 -6.4311 5.4118 42 1 -3.3861 -6.6976 5.2558 43 1 -2.9965 -9.1883 4.9701 44 1 -1.1782 -8.9224 5.1255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609417646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = 41.842269 kcal Electronic energy + Delta-G solvation = -27429.852632 eV Core-core repulsion = 23578.469596 eV Total energy + Delta-G solvation = -3851.383036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.73833 -40.96313 -39.45321 -38.38279 -36.82552 -36.05289 -34.59131 -33.48057 -33.31603 -31.56035 -29.19511 -26.74297 -26.07181 -25.78495 -24.27581 -23.79042 -23.28974 -21.67516 -21.15821 -20.50498 -19.94250 -19.24278 -18.58146 -17.88773 -17.33036 -17.02619 -16.65572 -16.41010 -15.90539 -15.63260 -15.54045 -15.32021 -15.01813 -14.72548 -14.16846 -14.06697 -13.94597 -13.60517 -13.41523 -13.25416 -13.19048 -12.96549 -12.85454 -12.47567 -12.43795 -12.39335 -12.22026 -12.14568 -12.06728 -11.71215 -11.65315 -11.57234 -11.48362 -11.36379 -10.64740 -10.36089 -10.06886 -9.39277 -8.51251 -6.01134 0.09018 1.04243 1.34449 1.38292 1.51923 1.77638 1.93934 2.18230 2.29566 2.58585 2.80850 3.06776 3.13475 3.23584 3.64592 3.71428 3.76199 3.91003 3.94421 3.96316 4.10237 4.17235 4.20397 4.26591 4.30479 4.31943 4.48107 4.58656 4.75753 4.77800 4.80342 4.87987 4.90193 4.95811 4.98674 5.09165 5.12509 5.21916 5.25206 5.35604 5.41418 5.74872 5.97178 6.01996 6.52371 7.05843 7.15073 7.45976 8.01298 8.66557 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004128 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.556409 B = 6781.778416 C = 9134.435275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.445 3.555 11 O -0.605 6.605 12 C 0.065 3.935 13 N -0.520 5.520 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.099 4.099 18 C 0.176 3.824 19 H 0.080 0.920 20 C 0.169 3.831 21 N -0.385 5.385 22 O 0.072 5.928 23 C 0.209 3.791 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.134 4.134 27 N -0.494 5.494 28 H 0.279 0.721 29 H 0.393 0.607 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.165 0.835 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 -20.417 4.942 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.209 5.209 10 C 0.232 3.768 11 O -0.491 6.491 12 C -0.067 4.067 13 N -0.247 5.247 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.138 4.138 18 C 0.067 3.933 19 H 0.098 0.902 20 C -0.104 4.104 21 N -0.092 5.092 22 O 0.012 5.988 23 C -0.010 4.010 24 C -0.120 4.120 25 C -0.191 4.191 26 C -0.172 4.172 27 N -0.227 5.227 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.182 0.818 41 H 0.114 0.886 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.169 -20.006 5.007 21.261 hybrid contribution -0.787 1.209 -0.507 1.529 sum -5.957 -18.797 4.500 20.225 Atomic orbital electron populations 1.69684 1.06974 1.29441 1.50107 1.26100 0.96567 1.02525 0.96000 0.84885 0.77824 0.76531 0.78824 1.19297 1.19341 1.19785 1.19691 0.92743 0.83747 1.50200 0.90115 1.41918 1.09127 1.04779 1.65098 1.20387 0.88261 0.85453 0.82706 1.90454 1.15132 1.87532 1.55937 1.21575 0.93727 0.89990 1.01379 1.61438 1.24648 1.00391 1.38190 1.22268 0.95879 1.01399 0.87746 1.21562 0.96909 0.93751 1.02560 1.21567 0.99527 0.97026 0.96423 1.21603 0.96368 0.95780 1.00066 1.20031 0.93291 0.91270 0.88745 0.90222 1.25827 0.90263 0.97691 0.96658 1.74799 1.11823 1.20956 1.01639 1.85298 1.18487 1.58361 1.36608 1.28562 0.93140 0.91116 0.88196 1.20671 0.87853 1.11285 0.92189 1.23321 1.05724 0.96868 0.93163 1.23315 1.05455 0.93852 0.94609 1.71810 1.11526 1.23886 1.15517 0.91175 0.77419 0.91058 0.91715 0.93926 0.91366 0.92824 0.89283 0.88954 0.90214 0.92369 0.89355 0.81766 0.88614 0.84423 0.84010 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 13.05 21.66 0.28 -51.13 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 3 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.33 -19.85 9.68 84.04 0.81 -19.03 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.04 16 9 N -0.57 -31.66 5.29 -306.98 -1.62 -33.28 16 10 C 0.45 23.28 7.46 87.66 0.65 23.94 16 11 O -0.60 -35.36 13.90 -3.07 -0.04 -35.40 16 12 C 0.06 2.71 5.24 85.56 0.45 3.16 16 13 N -0.52 -19.52 4.22 -880.07 -3.72 -23.24 16 14 C 0.05 1.84 5.10 86.33 0.44 2.28 16 15 C -0.11 -2.93 6.09 30.65 0.19 -2.74 16 16 C -0.11 -2.20 6.00 30.68 0.18 -2.02 16 17 C -0.10 -2.47 5.35 30.65 0.16 -2.31 16 18 C 0.18 5.41 2.39 44.19 0.11 5.51 16 19 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 20 C 0.17 5.59 5.25 138.46 0.73 6.31 16 21 N -0.39 -14.02 11.82 -60.31 -0.71 -14.73 16 22 O 0.07 2.24 11.08 74.87 0.83 3.07 16 23 C 0.21 5.37 7.97 88.38 0.70 6.08 16 24 C -0.10 -1.51 6.33 -11.54 -0.07 -1.59 16 25 C -0.15 -1.71 10.18 30.62 0.31 -1.40 16 26 C -0.13 -1.27 10.24 30.62 0.31 -0.95 16 27 N -0.49 -14.72 11.55 -303.18 -3.50 -18.22 16 28 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.39 20.97 7.90 -92.71 -0.73 20.24 16 30 H 0.07 3.05 6.31 -2.38 -0.02 3.04 16 31 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.91 5.78 -2.39 -0.01 2.89 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 42 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -75.31 363.86 -0.71 -76.02 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.30 Total: 33.73 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.45 Total: 17.04 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -9.27 Total: -140.59 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: 0.79 Total: -32.34 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.31 -0.71 -76.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.862 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds