Wall clock time and date at job start Tue Mar 31 2020 13:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39689 * 125.77157 * 2 1 4 4 C 1.36213 * 107.85639 * 180.13127 * 3 2 1 5 5 N 1.39205 * 126.27307 * 179.84738 * 4 3 2 6 6 C 1.34778 * 119.99490 * 359.68866 * 5 4 3 7 7 O 1.21393 * 120.00416 * 359.97438 * 6 5 4 8 8 C 1.49311 * 119.99800 * 180.02562 * 6 5 4 9 9 O 1.21362 * 120.00026 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99800 * 179.97438 * 8 6 5 11 11 C 1.46501 * 119.99537 * 179.97438 * 10 8 6 12 12 C 1.54270 * 110.03162 * 87.09295 * 11 10 8 13 13 C 1.54961 * 104.16191 * 95.75208 * 12 11 10 14 14 C 1.54895 * 102.77671 * 37.88526 * 13 12 11 15 15 C 1.53869 * 110.03042 * 204.30824 * 11 10 8 16 16 N 1.35850 * 107.45784 * 359.58290 * 4 3 2 17 17 C 1.46502 * 126.09906 * 180.24355 * 16 4 3 18 18 C 1.50702 * 109.47302 * 89.99833 * 17 16 4 19 19 H 1.08001 * 119.99930 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00125 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47080 * 90.00273 * 22 20 18 24 24 H 1.48499 * 109.46814 * 210.00193 * 22 20 18 25 25 H 1.48502 * 109.46856 * 329.99840 * 22 20 18 26 26 N 1.30850 * 125.76687 * 179.65591 * 2 1 3 27 27 H 1.08997 * 109.47474 * 270.31885 * 1 2 3 28 28 H 1.09004 * 109.47251 * 30.31892 * 1 2 3 29 29 H 1.09000 * 109.47159 * 150.31585 * 1 2 3 30 30 H 1.08003 * 126.07028 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00227 * 179.68955 * 5 4 3 32 32 H 0.96992 * 120.00283 * 359.97438 * 10 8 6 33 33 H 1.09002 * 110.01794 * 325.69939 * 11 10 8 34 34 H 1.08997 * 110.48585 * 214.40010 * 12 11 10 35 35 H 1.09002 * 110.48442 * 337.03893 * 12 11 10 36 36 H 1.09001 * 110.71970 * 279.57802 * 13 12 11 37 37 H 1.08991 * 110.92569 * 156.29385 * 13 12 11 38 38 H 1.08997 * 110.48689 * 203.40743 * 14 13 12 39 39 H 1.09000 * 110.59637 * 80.82119 * 14 13 12 40 40 H 1.08999 * 110.03405 * 359.95371 * 15 11 10 41 41 H 1.08996 * 110.03529 * 121.38320 * 15 11 10 42 42 H 1.08998 * 109.47304 * 210.00034 * 17 16 4 43 43 H 1.09005 * 109.46984 * 330.00069 * 17 16 4 44 44 H 0.97003 * 120.00281 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7144 -0.0030 5 7 4.7485 1.5289 -0.0070 6 6 4.6119 2.8697 -0.0145 7 8 3.5046 3.3671 -0.0184 8 6 5.8227 3.7434 -0.0194 9 8 6.9298 3.2463 -0.0161 10 7 5.6861 5.0842 -0.0275 11 6 6.8741 5.9415 -0.0317 12 6 7.3468 6.1824 -1.4803 13 6 6.7025 7.5371 -1.8690 14 6 6.8062 8.3545 -0.5573 15 6 6.5302 7.3217 0.5549 16 7 3.6088 -0.6441 0.0047 17 6 4.7857 -1.5166 0.0097 18 6 5.1890 -1.8078 1.4323 19 1 4.6249 -1.3855 2.2507 20 6 6.2776 -2.6141 1.6889 21 7 6.9636 -3.1296 0.6923 22 14 6.7771 -2.9756 3.4523 23 1 6.0752 -4.1958 3.9253 24 1 8.2447 -3.1925 3.5164 25 1 6.4084 -1.8258 4.3168 26 7 2.2718 -1.0617 0.0064 27 1 -0.3634 0.0057 1.0276 28 1 -0.3634 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9870 2.1596 0.0004 31 1 5.6333 1.1315 -0.0043 32 1 4.8013 5.4816 -0.0306 33 1 7.6713 5.4772 0.5488 34 1 8.4338 6.2517 -1.5204 35 1 6.9899 5.3875 -2.1352 36 1 5.6603 7.3999 -2.1571 37 1 7.2630 8.0192 -2.6698 38 1 6.0551 9.1442 -0.5396 39 1 7.8050 8.7767 -0.4466 40 1 5.4791 7.3541 0.8419 41 1 7.1604 7.5274 1.4201 42 1 4.5476 -2.4508 -0.4989 43 1 5.6077 -1.0210 -0.5068 44 1 7.7292 -3.6972 0.8728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610951745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:28 Heat of formation + Delta-G solvation = -2.263631 kcal Electronic energy + Delta-G solvation = -26691.085235 eV Core-core repulsion = 22837.789624 eV Total energy + Delta-G solvation = -3853.295611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19019 -40.29805 -38.88899 -37.74606 -35.07822 -33.93566 -33.53263 -32.07128 -29.31793 -29.10010 -28.71284 -28.07866 -26.05913 -24.83992 -22.85214 -21.55471 -21.01189 -20.32485 -19.91236 -19.48629 -17.92511 -17.06303 -16.83553 -16.39969 -16.20218 -15.87880 -15.56561 -15.02498 -14.62077 -14.52023 -14.20024 -13.97073 -13.78459 -13.52729 -12.96257 -12.78600 -12.55466 -12.17176 -12.10413 -12.01462 -11.87177 -11.66246 -11.53048 -11.47030 -11.40777 -11.17680 -11.06274 -10.97425 -10.86286 -10.53342 -10.31773 -9.84683 -9.80433 -9.51714 -9.40429 -8.69008 -7.97258 -7.56234 -6.30459 -4.39102 1.24631 2.12412 2.62899 3.20320 3.21205 3.26706 3.26814 3.32849 3.56075 3.81483 4.15031 4.24988 4.27283 4.39498 4.53911 5.02606 5.03055 5.08486 5.11548 5.26181 5.29043 5.29848 5.43466 5.53504 5.54180 5.66184 5.76081 5.86472 5.95682 5.99977 6.05418 6.08234 6.14397 6.19959 6.29591 6.52564 6.82413 6.96770 7.02962 7.39204 7.47538 7.55426 7.65354 7.81084 7.84788 8.08888 8.56647 8.69476 9.28529 10.76980 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.003521 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.213199 B = 7951.334603 C = 9788.774269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.288 4.288 4 C 0.294 3.706 5 N -0.607 5.607 6 C 0.511 3.489 7 O -0.499 6.499 8 C 0.515 3.485 9 O -0.507 6.507 10 N -0.694 5.694 11 C 0.137 3.863 12 C -0.135 4.135 13 C -0.127 4.127 14 C -0.124 4.124 15 C -0.132 4.132 16 N -0.341 5.341 17 C 0.255 3.745 18 C -0.542 4.542 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.907 3.093 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.278 5.278 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.163 0.837 31 H 0.428 0.572 32 H 0.412 0.588 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 21.454 -3.525 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.319 4.319 4 C 0.071 3.929 5 N -0.255 5.255 6 C 0.292 3.708 7 O -0.372 6.372 8 C 0.295 3.705 9 O -0.382 6.382 10 N -0.349 5.349 11 C 0.033 3.967 12 C -0.174 4.174 13 C -0.164 4.164 14 C -0.162 4.162 15 C -0.170 4.170 16 N -0.127 5.127 17 C 0.137 3.863 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.103 5.103 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.267 0.733 32 H 0.249 0.751 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.468 19.991 -3.563 20.359 hybrid contribution 0.624 0.405 0.974 1.226 sum -0.845 20.396 -2.588 20.577 Atomic orbital electron populations 1.20029 0.87434 1.02414 1.02229 1.22018 0.96602 0.90898 1.02013 1.21275 0.88914 1.00533 1.21213 1.17977 0.87539 0.83500 1.03843 1.42311 1.09517 1.04887 1.68774 1.19945 0.89722 0.82454 0.78686 1.90693 1.25948 1.73879 1.46721 1.19827 0.88973 0.83612 0.78092 1.90830 1.26164 1.74185 1.46980 1.45897 1.10949 1.04754 1.73281 1.21773 0.87505 0.90185 0.97221 1.22818 1.01062 0.97822 0.95683 1.22548 1.01129 0.95410 0.97333 1.22374 1.01986 0.97511 0.94322 1.22474 1.02625 0.92984 0.98879 1.49588 1.06581 1.01933 1.54551 1.19693 0.77731 0.89731 0.99096 1.21315 1.13533 1.32038 0.91207 0.91678 1.24932 0.95586 0.94846 0.98264 1.69910 1.19193 1.32295 1.31189 0.86336 0.77691 0.78990 0.83586 1.20219 1.20788 1.19671 1.77364 0.86101 1.21805 1.25045 0.91243 0.91097 0.91469 0.82012 0.73269 0.75124 0.88568 0.90361 0.90902 0.91334 0.91314 0.91309 0.91259 0.90635 0.90373 0.92353 0.93612 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.98 7.20 -82.47 -0.59 0.38 16 3 C -0.29 -5.74 9.58 -39.77 -0.38 -6.13 16 4 C 0.29 6.25 7.68 -152.85 -1.17 5.08 16 5 N -0.61 -11.37 5.40 -11.80 -0.06 -11.43 16 6 C 0.51 8.33 7.85 -11.65 -0.09 8.24 16 7 O -0.50 -8.33 13.60 5.46 0.07 -8.25 16 8 C 0.52 7.32 7.88 -11.65 -0.09 7.23 16 9 O -0.51 -8.48 16.14 5.49 0.09 -8.39 16 10 N -0.69 -7.29 5.03 -53.20 -0.27 -7.55 16 11 C 0.14 1.22 3.23 -66.81 -0.22 1.00 16 12 C -0.14 -1.12 6.54 -25.03 -0.16 -1.29 16 13 C -0.13 -0.82 6.91 -24.70 -0.17 -0.99 16 14 C -0.12 -0.69 6.83 -25.07 -0.17 -0.86 16 15 C -0.13 -0.84 6.57 -25.62 -0.17 -1.01 16 16 N -0.34 -8.08 3.62 -61.46 -0.22 -8.30 16 17 C 0.26 6.52 6.02 -5.19 -0.03 6.49 16 18 C -0.54 -14.94 9.39 -34.44 -0.32 -15.26 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 21 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 22 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.28 -6.43 12.56 33.64 0.42 -6.00 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.16 3.03 5.83 -52.48 -0.31 2.72 16 31 H 0.43 8.10 7.46 -40.82 -0.30 7.79 16 32 H 0.41 3.72 7.78 -40.82 -0.32 3.40 16 33 H 0.10 0.98 7.59 -51.93 -0.39 0.59 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.45 7.61 -51.93 -0.40 0.06 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.05 1.15 7.52 -51.93 -0.39 0.76 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -31.49 371.44 -8.25 -39.74 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.30 Total: 8.43 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.30 Total: 4.13 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.61 Total: -57.48 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.16 Total: -16.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.49 -8.25 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610951745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.477 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds