Wall clock time and date at job start Tue Mar 31 2020 13:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39689 * 125.77157 * 2 1 4 4 C 1.36213 * 107.85639 * 180.13127 * 3 2 1 5 5 N 1.39205 * 126.27307 * 179.84738 * 4 3 2 6 6 C 1.34778 * 119.99490 * 359.68866 * 5 4 3 7 7 O 1.21393 * 120.00416 * 359.97438 * 6 5 4 8 8 C 1.49311 * 119.99800 * 180.02562 * 6 5 4 9 9 O 1.21362 * 120.00026 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99800 * 179.97438 * 8 6 5 11 11 C 1.46501 * 119.99537 * 179.97438 * 10 8 6 12 12 C 1.54270 * 110.03162 * 87.09295 * 11 10 8 13 13 C 1.54961 * 104.16191 * 95.75208 * 12 11 10 14 14 C 1.54895 * 102.77671 * 37.88526 * 13 12 11 15 15 C 1.53869 * 110.03042 * 204.30824 * 11 10 8 16 16 N 1.35850 * 107.45784 * 359.58290 * 4 3 2 17 17 C 1.46502 * 126.09906 * 180.24355 * 16 4 3 18 18 C 1.50702 * 109.47302 * 89.99833 * 17 16 4 19 19 H 1.08001 * 119.99930 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00125 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47080 * 90.00273 * 22 20 18 24 24 H 1.48499 * 109.46814 * 210.00193 * 22 20 18 25 25 H 1.48502 * 109.46856 * 329.99840 * 22 20 18 26 26 N 1.30850 * 125.76687 * 179.65591 * 2 1 3 27 27 H 1.08997 * 109.47474 * 270.31885 * 1 2 3 28 28 H 1.09004 * 109.47251 * 30.31892 * 1 2 3 29 29 H 1.09000 * 109.47159 * 150.31585 * 1 2 3 30 30 H 1.08003 * 126.07028 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00227 * 179.68955 * 5 4 3 32 32 H 0.96992 * 120.00283 * 359.97438 * 10 8 6 33 33 H 1.09002 * 110.01794 * 325.69939 * 11 10 8 34 34 H 1.08997 * 110.48585 * 214.40010 * 12 11 10 35 35 H 1.09002 * 110.48442 * 337.03893 * 12 11 10 36 36 H 1.09001 * 110.71970 * 279.57802 * 13 12 11 37 37 H 1.08991 * 110.92569 * 156.29385 * 13 12 11 38 38 H 1.08997 * 110.48689 * 203.40743 * 14 13 12 39 39 H 1.09000 * 110.59637 * 80.82119 * 14 13 12 40 40 H 1.08999 * 110.03405 * 359.95371 * 15 11 10 41 41 H 1.08996 * 110.03529 * 121.38320 * 15 11 10 42 42 H 1.08998 * 109.47304 * 210.00034 * 17 16 4 43 43 H 1.09005 * 109.46984 * 330.00069 * 17 16 4 44 44 H 0.97003 * 120.00281 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7144 -0.0030 5 7 4.7485 1.5289 -0.0070 6 6 4.6119 2.8697 -0.0145 7 8 3.5046 3.3671 -0.0184 8 6 5.8227 3.7434 -0.0194 9 8 6.9298 3.2463 -0.0161 10 7 5.6861 5.0842 -0.0275 11 6 6.8741 5.9415 -0.0317 12 6 7.3468 6.1824 -1.4803 13 6 6.7025 7.5371 -1.8690 14 6 6.8062 8.3545 -0.5573 15 6 6.5302 7.3217 0.5549 16 7 3.6088 -0.6441 0.0047 17 6 4.7857 -1.5166 0.0097 18 6 5.1890 -1.8078 1.4323 19 1 4.6249 -1.3855 2.2507 20 6 6.2776 -2.6141 1.6889 21 7 6.9636 -3.1296 0.6923 22 14 6.7771 -2.9756 3.4523 23 1 6.0752 -4.1958 3.9253 24 1 8.2447 -3.1925 3.5164 25 1 6.4084 -1.8258 4.3168 26 7 2.2718 -1.0617 0.0064 27 1 -0.3634 0.0057 1.0276 28 1 -0.3634 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9870 2.1596 0.0004 31 1 5.6333 1.1315 -0.0043 32 1 4.8013 5.4816 -0.0306 33 1 7.6713 5.4772 0.5488 34 1 8.4338 6.2517 -1.5204 35 1 6.9899 5.3875 -2.1352 36 1 5.6603 7.3999 -2.1571 37 1 7.2630 8.0192 -2.6698 38 1 6.0551 9.1442 -0.5396 39 1 7.8050 8.7767 -0.4466 40 1 5.4791 7.3541 0.8419 41 1 7.1604 7.5274 1.4201 42 1 4.5476 -2.4508 -0.4989 43 1 5.6077 -1.0210 -0.5068 44 1 7.7292 -3.6972 0.8728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610951745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:28 Heat of formation + Delta-G solvation = -22.846680 kcal Electronic energy + Delta-G solvation = -26691.977783 eV Core-core repulsion = 22837.789624 eV Total energy + Delta-G solvation = -3854.188159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65243 -41.61749 -40.04786 -38.69526 -36.52235 -35.76599 -34.62572 -33.85366 -30.91038 -30.17764 -29.66355 -29.00743 -27.83908 -26.08583 -24.73731 -22.75024 -21.76826 -21.42598 -21.14622 -20.77474 -19.26477 -18.88295 -18.25126 -17.92605 -17.37249 -17.04100 -16.61739 -16.36581 -16.14687 -15.89586 -15.63195 -15.04148 -14.88205 -14.62754 -14.45647 -14.21489 -14.08273 -13.61484 -13.45197 -13.14639 -13.01997 -12.90807 -12.79982 -12.73659 -12.64263 -12.32323 -12.08408 -12.01548 -11.96890 -11.82188 -11.74560 -11.46160 -11.40600 -10.85141 -10.79087 -10.34577 -9.70034 -9.19688 -8.39311 -6.57126 -0.06243 0.81045 1.08325 1.34840 1.35293 1.46465 1.79206 1.81134 2.09781 2.29246 2.42812 2.91358 3.16995 3.57187 3.66457 3.78077 3.98179 4.12724 4.42053 4.48527 4.50624 4.54069 4.64837 4.65596 4.68324 4.74998 4.80607 4.81435 4.89679 4.92187 5.01101 5.07563 5.15845 5.18714 5.24519 5.26860 5.41190 5.47291 5.47953 5.72746 5.79219 5.92392 5.96595 6.17729 6.45183 6.58255 6.75943 6.94337 7.14827 8.67596 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.003521 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.213199 B = 7951.334603 C = 9788.774269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.291 4.291 4 C 0.288 3.712 5 N -0.615 5.615 6 C 0.515 3.485 7 O -0.499 6.499 8 C 0.521 3.479 9 O -0.537 6.537 10 N -0.672 5.672 11 C 0.130 3.870 12 C -0.137 4.137 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.126 4.126 16 N -0.367 5.367 17 C 0.272 3.728 18 C -0.558 4.558 19 H 0.049 0.951 20 C 0.025 3.975 21 N -0.914 5.914 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.271 1.271 26 N -0.322 5.322 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.178 0.822 31 H 0.425 0.575 32 H 0.421 0.579 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 23.886 -2.713 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.322 4.322 4 C 0.066 3.934 5 N -0.263 5.263 6 C 0.297 3.703 7 O -0.372 6.372 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.325 5.325 11 C 0.027 3.973 12 C -0.175 4.175 13 C -0.161 4.161 14 C -0.156 4.156 15 C -0.164 4.164 16 N -0.153 5.153 17 C 0.153 3.847 18 C -0.596 4.596 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.552 5.552 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.196 1.196 26 N -0.147 5.147 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.196 0.804 31 H 0.263 0.737 32 H 0.260 0.740 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.218 22.489 -2.763 22.766 hybrid contribution 0.781 -0.231 0.665 1.052 sum -1.437 22.258 -2.097 22.403 Atomic orbital electron populations 1.20258 0.83472 1.04285 1.03895 1.22931 0.98903 0.89808 0.98900 1.21552 0.88326 1.01281 1.21069 1.18388 0.88924 0.82937 1.03160 1.42467 1.08720 1.05582 1.69545 1.20368 0.90545 0.81770 0.77645 1.90665 1.26315 1.73717 1.46489 1.19479 0.87595 0.84468 0.78478 1.90825 1.26725 1.74796 1.49033 1.45920 1.12270 1.03401 1.70950 1.22018 0.86391 0.91065 0.97822 1.22814 1.01509 0.98450 0.94761 1.22540 1.00965 0.94306 0.98254 1.22369 1.02942 0.97296 0.93018 1.22478 1.03338 0.91190 0.99410 1.49357 1.06423 1.02623 1.56873 1.19220 0.78569 0.89006 0.97887 1.21421 1.13955 1.32661 0.91610 0.93225 1.25739 0.95302 0.94326 1.02334 1.69991 1.19545 1.32556 1.33112 0.85359 0.77887 0.78721 0.78571 1.19664 1.19455 1.19604 1.77325 0.86131 1.23753 1.27494 0.89510 0.88167 0.90663 0.80445 0.73710 0.73983 0.89969 0.89931 0.92882 0.91397 0.90437 0.89978 0.90494 0.89803 0.89417 0.95057 0.94055 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.59 10.44 71.24 0.74 -0.84 16 2 C 0.06 2.32 7.20 43.06 0.31 2.63 16 3 C -0.29 -11.41 9.58 22.15 0.21 -11.20 16 4 C 0.29 12.48 7.68 131.25 1.01 13.48 16 5 N -0.62 -23.62 5.40 -309.57 -1.67 -25.29 16 6 C 0.52 16.72 7.85 87.23 0.68 17.41 16 7 O -0.50 -16.06 13.60 -3.38 -0.05 -16.11 16 8 C 0.52 14.75 7.88 87.23 0.69 15.43 16 9 O -0.54 -18.31 16.14 -3.29 -0.05 -18.36 16 10 N -0.67 -13.39 5.03 -440.57 -2.22 -15.60 16 11 C 0.13 2.16 3.23 45.72 0.15 2.31 16 12 C -0.14 -2.15 6.54 31.70 0.21 -1.94 16 13 C -0.12 -1.34 6.91 31.91 0.22 -1.12 16 14 C -0.12 -0.98 6.83 31.67 0.22 -0.76 16 15 C -0.13 -1.30 6.57 31.32 0.21 -1.09 16 16 N -0.37 -18.03 3.62 -348.37 -1.26 -19.29 16 17 C 0.27 14.62 6.02 85.63 0.52 15.14 16 18 C -0.56 -31.77 9.39 25.60 0.24 -31.53 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.02 1.37 5.46 84.66 0.46 1.83 16 21 N -0.91 -52.23 13.29 21.45 0.28 -51.95 16 22 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 N -0.32 -15.19 12.56 -47.49 -0.60 -15.78 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 2.04 8.14 -2.38 -0.02 2.03 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.18 6.33 5.83 -2.91 -0.02 6.31 16 31 H 0.42 16.85 7.46 -92.71 -0.69 16.16 16 32 H 0.42 6.84 7.78 -92.71 -0.72 6.12 16 33 H 0.08 1.64 7.59 -2.39 -0.02 1.62 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.05 8.04 -2.39 -0.02 1.03 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.75 7.61 -2.39 -0.02 0.73 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 2.21 7.52 -2.38 -0.02 2.19 16 44 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.26 371.44 1.96 -67.30 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.37 Total: 29.49 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 5.86 Total: 19.76 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.46 Total: -127.92 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.10 Total: -34.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.26 1.96 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610951745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.452 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds