Wall clock time and date at job start Tue Mar 31 2020 13:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99893 * 2 1 4 4 C 1.50692 * 120.00066 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47599 * 94.99864 * 4 2 1 6 6 C 1.46505 * 120.00163 * 270.00217 * 5 4 2 7 7 C 1.34772 * 120.00106 * 89.99780 * 5 4 2 8 8 O 1.21365 * 119.99854 * 3.65865 * 7 5 4 9 9 C 1.49304 * 120.00234 * 183.65565 * 7 5 4 10 10 O 1.21392 * 120.00133 * 354.16687 * 9 7 5 11 11 N 1.34778 * 120.00236 * 174.16800 * 9 7 5 12 12 C 1.39199 * 120.00208 * 179.97438 * 11 9 7 13 13 C 1.36216 * 126.27221 * 0.18668 * 12 11 9 14 14 C 1.39691 * 107.85981 * 180.26395 * 13 12 11 15 15 C 1.50697 * 125.77147 * 179.71858 * 14 13 12 16 16 N 1.30850 * 108.45781 * 359.73802 * 14 13 12 17 17 N 1.35851 * 126.27382 * 180.02562 * 12 11 9 18 18 C 1.46498 * 126.09767 * 359.97438 * 17 12 11 19 19 C 1.50698 * 109.47390 * 269.71869 * 18 17 12 20 20 H 1.07997 * 120.00022 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00081 * 179.72296 * 19 18 17 22 22 N 1.31517 * 120.00037 * 180.27876 * 21 19 18 23 23 Si 1.86806 * 120.00027 * 0.27530 * 21 19 18 24 24 H 1.48497 * 109.47053 * 89.99757 * 23 21 19 25 25 H 1.48497 * 109.47089 * 210.00039 * 23 21 19 26 26 H 1.48495 * 109.47064 * 330.00138 * 23 21 19 27 27 H 1.08002 * 119.99861 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99839 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47424 * 239.99937 * 3 2 1 30 30 H 1.09001 * 109.47504 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46642 * 120.00072 * 3 2 1 32 32 H 1.09002 * 109.47401 * 334.99917 * 4 2 1 33 33 H 1.08999 * 109.47536 * 215.00410 * 4 2 1 34 34 H 1.08995 * 109.47328 * 263.99030 * 6 5 4 35 35 H 1.09010 * 109.46780 * 23.99148 * 6 5 4 36 36 H 1.09002 * 109.46860 * 143.98534 * 6 5 4 37 37 H 0.97000 * 119.99958 * 359.97438 * 11 9 7 38 38 H 1.08005 * 126.07024 * 359.97438 * 13 12 11 39 39 H 1.09006 * 109.47028 * 269.99934 * 15 14 13 40 40 H 1.08998 * 109.47340 * 29.99475 * 15 14 13 41 41 H 1.09002 * 109.47265 * 149.99678 * 15 14 13 42 42 H 1.09002 * 109.47464 * 149.71766 * 18 17 12 43 43 H 1.09002 * 109.46861 * 29.71849 * 18 17 12 44 44 H 0.96998 * 119.99996 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4120 -1.6672 -1.3767 6 6 1.4916 -2.4802 -2.1756 7 6 3.5791 -1.2525 -1.9077 8 8 4.3710 -0.6357 -1.2255 9 6 3.8981 -1.5519 -3.3352 10 8 3.1569 -2.2581 -3.9875 11 7 5.0089 -1.0381 -3.8996 12 6 5.3066 -1.3177 -5.2304 13 6 4.5674 -2.0874 -6.0770 14 6 5.2202 -2.1143 -7.3117 15 6 4.7538 -2.8545 -8.5387 16 7 6.3053 -1.3886 -7.2226 17 7 6.3858 -0.8704 -5.9237 18 6 7.4474 -0.0048 -5.4041 19 6 7.0791 1.4376 -5.6378 20 1 6.1472 1.6849 -6.1244 21 6 7.9289 2.4418 -5.2249 22 7 7.6049 3.7008 -5.4240 23 14 9.5404 2.0140 -4.3825 24 1 10.6092 1.8690 -5.4032 25 1 9.9055 3.0964 -3.4337 26 1 9.3875 0.7366 -3.6410 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.6901 1.3629 -0.8899 30 1 1.3552 2.1336 0.0005 31 1 2.6902 1.3628 0.8900 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 1.7879 -3.5275 -2.1175 35 1 0.4784 -2.3673 -1.7896 36 1 1.5236 -2.1506 -3.2141 37 1 5.6010 -0.4735 -3.3785 38 1 3.6434 -2.5916 -5.8350 39 1 5.1713 -3.8614 -8.5363 40 1 3.6653 -2.9126 -8.5362 41 1 5.0873 -2.3249 -9.4312 42 1 8.3826 -0.2287 -5.9172 43 1 7.5685 -0.1803 -4.3351 44 1 8.2029 4.4072 -5.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611499474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:43 Heat of formation + Delta-G solvation = 47.801191 kcal Electronic energy + Delta-G solvation = -27191.832748 eV Core-core repulsion = 23340.708110 eV Total energy + Delta-G solvation = -3851.124638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33286 -40.35867 -38.62360 -36.93774 -35.22520 -34.26383 -33.72161 -32.17830 -29.63258 -28.78015 -28.04167 -27.55706 -26.68873 -26.33466 -24.00502 -22.44274 -20.99837 -19.89703 -19.36984 -18.69466 -17.55957 -17.19053 -17.04845 -16.46560 -16.39153 -15.68795 -15.24411 -14.93090 -14.52138 -14.45665 -14.06443 -13.98041 -13.62929 -13.27664 -13.20573 -13.05560 -12.81034 -12.66340 -12.62278 -12.31129 -11.97130 -11.94935 -11.89817 -11.84719 -11.50900 -11.30220 -11.12921 -10.81689 -10.61695 -10.26823 -9.92178 -9.75088 -9.59841 -9.23876 -8.97661 -8.83734 -8.03496 -7.63390 -6.31722 -4.36561 1.19168 1.67219 2.25925 2.54501 3.10520 3.13609 3.16473 3.18607 3.23239 3.48535 3.63444 4.16894 4.20186 4.54842 4.57990 4.94126 4.99915 5.08549 5.22010 5.28561 5.44327 5.46826 5.48613 5.61679 5.63474 5.72965 5.92070 5.94083 5.97969 6.00999 6.08497 6.10418 6.24333 6.31442 6.32387 6.48432 6.55950 6.66587 6.84002 7.20066 7.26359 7.36505 7.45647 7.72243 7.96353 8.24145 8.46835 8.73033 9.22744 10.80458 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004402 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.625712 B = 6359.039830 C = 8435.484991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C -0.118 4.118 4 C 0.146 3.854 5 N -0.582 5.582 6 C 0.063 3.937 7 C 0.514 3.486 8 O -0.508 6.508 9 C 0.514 3.486 10 O -0.491 6.491 11 N -0.608 5.608 12 C 0.297 3.703 13 C -0.284 4.284 14 C 0.054 3.946 15 C -0.063 4.063 16 N -0.275 5.275 17 N -0.341 5.341 18 C 0.228 3.772 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.427 0.573 38 H 0.165 0.835 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -12.388 9.820 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C -0.175 4.175 4 C 0.024 3.976 5 N -0.315 5.315 6 C -0.079 4.079 7 C 0.296 3.704 8 O -0.383 6.383 9 C 0.295 3.705 10 O -0.365 6.365 11 N -0.256 5.256 12 C 0.076 3.924 13 C -0.316 4.316 14 C -0.111 4.111 15 C -0.122 4.122 16 N -0.100 5.100 17 N -0.126 5.126 18 C 0.109 3.891 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.265 0.735 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.999 -11.828 9.255 19.223 hybrid contribution 0.463 0.213 1.231 1.332 sum -11.536 -11.615 10.486 19.441 Atomic orbital electron populations 1.23789 0.94968 1.02028 1.00898 1.22125 0.95632 0.96288 1.00250 1.20856 1.00098 0.93524 1.02991 1.20613 1.00731 0.94051 0.82172 1.47646 1.18350 1.51322 1.14203 1.22461 0.92015 0.94973 0.98459 1.19789 0.82655 0.80591 0.87396 1.90808 1.47358 1.38796 1.61325 1.19917 0.81289 0.81239 0.88044 1.90602 1.46627 1.35929 1.63383 1.42325 1.24713 1.49020 1.09496 1.17953 0.91867 0.98966 0.83630 1.21291 1.05694 1.12042 0.92540 1.22043 0.94007 0.98737 0.96319 1.20046 1.00830 0.98471 0.92840 1.77378 1.21038 1.15631 0.95992 1.49123 1.18490 1.38113 1.06862 1.20010 0.85275 0.89842 0.93966 1.21157 1.08581 0.87146 1.41655 0.90025 1.24806 0.97860 0.94686 0.94957 1.69867 1.37350 0.99090 1.45552 0.86905 0.84195 0.78880 0.80159 1.19467 1.20394 1.18907 0.88139 0.88446 0.91151 0.92130 0.91307 0.89252 0.88667 0.91917 0.91533 0.87253 0.73474 0.81780 0.91238 0.90945 0.91308 0.92974 0.94108 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 13.90 29.01 0.40 -1.02 16 2 C -0.14 -1.36 5.63 -101.07 -0.57 -1.93 16 3 C -0.12 -1.28 10.12 36.00 0.36 -0.92 16 4 C 0.15 1.36 5.57 -5.20 -0.03 1.33 16 5 N -0.58 -6.53 2.86 -183.52 -0.52 -7.05 16 6 C 0.06 0.58 9.55 59.85 0.57 1.15 16 7 C 0.51 7.39 7.73 -11.66 -0.09 7.30 16 8 O -0.51 -8.28 15.68 5.48 0.09 -8.20 16 9 C 0.51 8.20 7.73 -11.65 -0.09 8.10 16 10 O -0.49 -7.75 10.26 5.46 0.06 -7.69 16 11 N -0.61 -11.06 5.40 -11.80 -0.06 -11.12 16 12 C 0.30 6.13 7.68 -152.86 -1.17 4.96 16 13 C -0.28 -5.46 9.58 -39.77 -0.38 -5.84 16 14 C 0.05 1.03 7.20 -82.47 -0.59 0.44 16 15 C -0.06 -0.87 10.44 36.00 0.38 -0.50 16 16 N -0.28 -6.19 12.56 33.64 0.42 -5.77 16 17 N -0.34 -7.81 3.62 -61.47 -0.22 -8.03 16 18 C 0.23 5.44 5.09 -5.20 -0.03 5.42 16 19 C -0.55 -15.21 9.94 -34.44 -0.34 -15.55 16 20 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 22 N -0.88 -26.08 13.96 55.43 0.77 -25.30 16 23 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 27 H 0.10 0.75 7.83 -52.49 -0.41 0.34 16 28 H 0.10 0.62 7.99 -52.49 -0.42 0.20 16 29 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 30 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.59 7.92 -51.93 -0.41 0.18 16 33 H 0.10 0.97 7.37 -51.93 -0.38 0.58 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.03 -51.92 -0.42 0.04 16 36 H 0.11 1.22 5.35 -51.94 -0.28 0.95 16 37 H 0.43 7.76 7.46 -40.82 -0.30 7.45 16 38 H 0.16 2.91 5.83 -52.48 -0.31 2.61 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.23 7.58 -51.93 -0.39 0.84 16 43 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -32.23 372.76 -6.38 -38.61 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.18 Total: 8.36 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.68 Total: 5.12 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.39 Total: -57.28 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.14 Total: -15.89 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.23 -6.38 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611499474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.411 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds