Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99893 * 2 1 4 4 C 1.50692 * 120.00066 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47599 * 94.99864 * 4 2 1 6 6 C 1.46505 * 120.00163 * 270.00217 * 5 4 2 7 7 C 1.34772 * 120.00106 * 89.99780 * 5 4 2 8 8 O 1.21365 * 119.99854 * 3.65865 * 7 5 4 9 9 C 1.49304 * 120.00234 * 183.65565 * 7 5 4 10 10 O 1.21392 * 120.00133 * 354.16687 * 9 7 5 11 11 N 1.34778 * 120.00236 * 174.16800 * 9 7 5 12 12 C 1.39199 * 120.00208 * 179.97438 * 11 9 7 13 13 C 1.36216 * 126.27221 * 0.18668 * 12 11 9 14 14 C 1.39691 * 107.85981 * 180.26395 * 13 12 11 15 15 C 1.50697 * 125.77147 * 179.71858 * 14 13 12 16 16 N 1.30850 * 108.45781 * 359.73802 * 14 13 12 17 17 N 1.35851 * 126.27382 * 180.02562 * 12 11 9 18 18 C 1.46498 * 126.09767 * 359.97438 * 17 12 11 19 19 C 1.50698 * 109.47390 * 269.71869 * 18 17 12 20 20 H 1.07997 * 120.00022 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00081 * 179.72296 * 19 18 17 22 22 N 1.31517 * 120.00037 * 180.27876 * 21 19 18 23 23 Si 1.86806 * 120.00027 * 0.27530 * 21 19 18 24 24 H 1.48497 * 109.47053 * 89.99757 * 23 21 19 25 25 H 1.48497 * 109.47089 * 210.00039 * 23 21 19 26 26 H 1.48495 * 109.47064 * 330.00138 * 23 21 19 27 27 H 1.08002 * 119.99861 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99839 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47424 * 239.99937 * 3 2 1 30 30 H 1.09001 * 109.47504 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46642 * 120.00072 * 3 2 1 32 32 H 1.09002 * 109.47401 * 334.99917 * 4 2 1 33 33 H 1.08999 * 109.47536 * 215.00410 * 4 2 1 34 34 H 1.08995 * 109.47328 * 263.99030 * 6 5 4 35 35 H 1.09010 * 109.46780 * 23.99148 * 6 5 4 36 36 H 1.09002 * 109.46860 * 143.98534 * 6 5 4 37 37 H 0.97000 * 119.99958 * 359.97438 * 11 9 7 38 38 H 1.08005 * 126.07024 * 359.97438 * 13 12 11 39 39 H 1.09006 * 109.47028 * 269.99934 * 15 14 13 40 40 H 1.08998 * 109.47340 * 29.99475 * 15 14 13 41 41 H 1.09002 * 109.47265 * 149.99678 * 15 14 13 42 42 H 1.09002 * 109.47464 * 149.71766 * 18 17 12 43 43 H 1.09002 * 109.46861 * 29.71849 * 18 17 12 44 44 H 0.96998 * 119.99996 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4120 -1.6672 -1.3767 6 6 1.4916 -2.4802 -2.1756 7 6 3.5791 -1.2525 -1.9077 8 8 4.3710 -0.6357 -1.2255 9 6 3.8981 -1.5519 -3.3352 10 8 3.1569 -2.2581 -3.9875 11 7 5.0089 -1.0381 -3.8996 12 6 5.3066 -1.3177 -5.2304 13 6 4.5674 -2.0874 -6.0770 14 6 5.2202 -2.1143 -7.3117 15 6 4.7538 -2.8545 -8.5387 16 7 6.3053 -1.3886 -7.2226 17 7 6.3858 -0.8704 -5.9237 18 6 7.4474 -0.0048 -5.4041 19 6 7.0791 1.4376 -5.6378 20 1 6.1472 1.6849 -6.1244 21 6 7.9289 2.4418 -5.2249 22 7 7.6049 3.7008 -5.4240 23 14 9.5404 2.0140 -4.3825 24 1 10.6092 1.8690 -5.4032 25 1 9.9055 3.0964 -3.4337 26 1 9.3875 0.7366 -3.6410 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.6901 1.3629 -0.8899 30 1 1.3552 2.1336 0.0005 31 1 2.6902 1.3628 0.8900 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 1.7879 -3.5275 -2.1175 35 1 0.4784 -2.3673 -1.7896 36 1 1.5236 -2.1506 -3.2141 37 1 5.6010 -0.4735 -3.3785 38 1 3.6434 -2.5916 -5.8350 39 1 5.1713 -3.8614 -8.5363 40 1 3.6653 -2.9126 -8.5362 41 1 5.0873 -2.3249 -9.4312 42 1 8.3826 -0.2287 -5.9172 43 1 7.5685 -0.1803 -4.3351 44 1 8.2029 4.4072 -5.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611499474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = 26.384883 kcal Electronic energy + Delta-G solvation = -27192.761428 eV Core-core repulsion = 23340.708110 eV Total energy + Delta-G solvation = -3852.053319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71282 -41.67559 -39.83847 -37.90210 -36.49419 -35.76585 -35.06641 -34.01236 -31.21616 -30.25551 -28.90268 -28.36178 -28.04089 -27.63986 -25.18838 -24.26148 -22.30932 -21.38863 -20.63911 -19.52092 -19.30833 -18.83305 -18.29865 -17.83160 -17.50816 -16.88785 -16.57655 -16.25827 -15.92911 -15.74042 -15.48979 -14.93735 -14.81779 -14.66897 -14.53712 -14.20110 -14.10877 -13.95509 -13.81840 -13.60005 -13.37064 -13.17428 -12.98794 -12.78924 -12.62529 -12.59785 -12.43895 -12.24525 -12.12159 -11.91236 -11.84417 -11.44180 -10.95536 -10.64942 -10.10459 -9.90142 -9.67308 -9.19357 -8.46378 -6.58613 -0.05736 0.69228 1.03048 1.25652 1.31593 1.32870 1.41820 1.79929 1.81342 2.08592 2.20968 2.36432 2.85513 3.00512 3.73065 3.84127 3.88057 4.09461 4.26785 4.40402 4.41176 4.44464 4.57365 4.58849 4.63640 4.66641 4.72809 4.79095 4.87903 4.92405 4.97598 5.07699 5.08554 5.11807 5.14554 5.17690 5.27415 5.61863 5.74518 5.81083 5.85402 5.91511 6.00684 6.17036 6.42915 6.48916 6.69103 6.89745 7.06070 8.70081 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004402 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.625712 B = 6359.039830 C = 8435.484991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.169 4.169 3 C -0.117 4.117 4 C 0.144 3.856 5 N -0.568 5.568 6 C 0.060 3.940 7 C 0.512 3.488 8 O -0.536 6.536 9 C 0.514 3.486 10 O -0.487 6.487 11 N -0.617 5.617 12 C 0.291 3.709 13 C -0.288 4.288 14 C 0.062 3.938 15 C -0.061 4.061 16 N -0.320 5.320 17 N -0.368 5.368 18 C 0.238 3.762 19 C -0.555 4.555 20 H 0.025 0.975 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.239 1.239 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.424 0.576 38 H 0.181 0.819 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 -14.951 11.192 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.170 4.170 3 C -0.174 4.174 4 C 0.024 3.976 5 N -0.300 5.300 6 C -0.081 4.081 7 C 0.293 3.707 8 O -0.413 6.413 9 C 0.296 3.704 10 O -0.360 6.360 11 N -0.265 5.265 12 C 0.069 3.931 13 C -0.319 4.319 14 C -0.103 4.103 15 C -0.120 4.120 16 N -0.145 5.145 17 N -0.153 5.153 18 C 0.118 3.882 19 C -0.593 4.593 20 H 0.043 0.957 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.768 3.232 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.162 1.162 27 H 0.123 0.877 28 H 0.141 0.859 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.261 0.739 38 H 0.198 0.802 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.398 -14.435 10.635 22.383 hybrid contribution 0.591 0.993 0.768 1.387 sum -12.807 -13.443 11.403 21.789 Atomic orbital electron populations 1.24050 0.94231 1.03508 0.97410 1.22038 0.96258 0.95477 1.03180 1.20815 1.00054 0.95248 1.01312 1.20834 1.00918 0.95187 0.80661 1.47828 1.17150 1.49984 1.15079 1.22573 0.93248 0.95035 0.97261 1.19552 0.83727 0.80988 0.86401 1.90797 1.48576 1.40428 1.61508 1.20357 0.80478 0.80692 0.88859 1.90590 1.46139 1.35553 1.63748 1.42490 1.25581 1.49661 1.08752 1.18373 0.91395 0.98649 0.84655 1.21579 1.05981 1.11944 0.92438 1.22936 0.92464 0.97057 0.97868 1.20268 1.02462 0.98931 0.90327 1.77324 1.23276 1.17620 0.96271 1.49003 1.19338 1.39321 1.07654 1.19744 0.85858 0.87563 0.95036 1.21216 1.06693 0.90004 1.41370 0.95671 1.25800 1.02120 0.94135 0.95413 1.70021 1.39322 1.00565 1.47141 0.85729 0.78412 0.79803 0.79230 1.18563 1.19792 1.16172 0.87731 0.85855 0.94527 0.91310 0.91505 0.85485 0.89915 0.90689 0.88232 0.89248 0.73858 0.80204 0.88738 0.88442 0.91071 0.92654 0.92204 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 13.90 67.78 0.94 -0.99 16 2 C -0.17 -2.92 5.63 -16.49 -0.09 -3.01 16 3 C -0.12 -2.57 10.12 71.24 0.72 -1.85 16 4 C 0.14 2.36 5.57 85.63 0.48 2.84 16 5 N -0.57 -11.76 2.86 -852.90 -2.44 -14.20 16 6 C 0.06 0.93 9.55 127.77 1.22 2.15 16 7 C 0.51 14.67 7.73 87.22 0.67 15.34 16 8 O -0.54 -17.90 15.68 -3.29 -0.05 -17.95 16 9 C 0.51 16.41 7.73 87.22 0.67 17.09 16 10 O -0.49 -14.92 10.26 -3.38 -0.03 -14.96 16 11 N -0.62 -23.01 5.40 -309.58 -1.67 -24.68 16 12 C 0.29 12.19 7.68 131.25 1.01 13.20 16 13 C -0.29 -10.94 9.58 22.15 0.21 -10.72 16 14 C 0.06 2.35 7.20 43.06 0.31 2.66 16 15 C -0.06 -1.56 10.44 71.23 0.74 -0.82 16 16 N -0.32 -14.64 12.56 -47.49 -0.60 -15.23 16 17 N -0.37 -17.30 3.62 -348.39 -1.26 -18.56 16 18 C 0.24 11.59 5.09 85.63 0.44 12.02 16 19 C -0.55 -32.30 9.94 25.60 0.25 -32.04 16 20 H 0.02 1.70 8.06 -2.91 -0.02 1.67 16 21 C 0.03 1.47 5.47 84.65 0.46 1.94 16 22 N -0.93 -57.32 13.96 21.45 0.30 -57.02 16 23 Si 0.95 41.71 27.47 68.60 1.88 43.59 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 27 H 0.10 1.25 7.83 -2.91 -0.02 1.23 16 28 H 0.12 0.93 7.99 -2.91 -0.02 0.90 16 29 H 0.04 1.03 7.77 -2.39 -0.02 1.01 16 30 H 0.07 1.32 7.78 -2.39 -0.02 1.30 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.13 1.13 7.92 -2.39 -0.02 1.11 16 33 H 0.08 1.60 7.37 -2.39 -0.02 1.58 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.93 8.03 -2.38 -0.02 0.91 16 36 H 0.09 1.82 5.35 -2.51 -0.01 1.81 16 37 H 0.42 16.04 7.46 -92.71 -0.69 15.35 16 38 H 0.18 6.13 5.83 -2.91 -0.02 6.12 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 43 H 0.06 2.66 6.56 -2.39 -0.02 2.64 16 44 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -74.73 372.76 4.45 -70.28 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.28 Total: 30.93 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 8.04 Total: 17.80 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.67 Total: -129.69 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.09 Total: -32.91 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.59 kcal Total: -74.73 4.45 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611499474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.666 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds