Wall clock time and date at job start Tue Mar 31 2020 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00294 * 2 1 4 4 C 1.52998 * 109.47374 * 124.99839 * 3 2 1 5 5 N 1.46495 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99919 * 270.00308 * 5 4 3 7 7 C 1.34772 * 120.00349 * 90.00179 * 5 4 3 8 8 O 1.21370 * 119.99862 * 3.62791 * 7 5 4 9 9 C 1.49306 * 120.00352 * 183.62716 * 7 5 4 10 10 O 1.21394 * 119.99786 * 354.16002 * 9 7 5 11 11 N 1.34778 * 120.00130 * 174.16799 * 9 7 5 12 12 C 1.39202 * 119.99815 * 179.97438 * 11 9 7 13 13 C 1.36216 * 126.27206 * 0.18279 * 12 11 9 14 14 C 1.39700 * 107.85682 * 180.26656 * 13 12 11 15 15 C 1.50701 * 125.76777 * 179.72073 * 14 13 12 16 16 N 1.30846 * 108.45875 * 359.73597 * 14 13 12 17 17 N 1.35848 * 126.27274 * 180.02562 * 12 11 9 18 18 C 1.46507 * 126.09610 * 359.97438 * 17 12 11 19 19 C 1.50698 * 109.46834 * 269.71768 * 18 17 12 20 20 H 1.08001 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00159 * 179.72866 * 19 18 17 22 22 N 1.31513 * 120.00206 * 180.27566 * 21 19 18 23 23 Si 1.86799 * 119.99679 * 0.26790 * 21 19 18 24 24 H 1.48502 * 109.47080 * 90.00848 * 23 21 19 25 25 H 1.48508 * 109.47190 * 210.00156 * 23 21 19 26 26 H 1.48496 * 109.47585 * 330.00352 * 23 21 19 27 27 H 1.08006 * 119.99839 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00102 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.46905 * 4.99979 * 3 2 1 31 31 H 1.09003 * 109.47652 * 245.00582 * 3 2 1 32 32 H 1.08995 * 109.46851 * 60.00333 * 4 3 2 33 33 H 1.09003 * 109.47338 * 300.00935 * 4 3 2 34 34 H 1.09009 * 109.46993 * 263.99758 * 6 5 4 35 35 H 1.08995 * 109.47213 * 23.99184 * 6 5 4 36 36 H 1.08996 * 109.47423 * 143.99887 * 6 5 4 37 37 H 0.96994 * 120.00079 * 359.97438 * 11 9 7 38 38 H 1.07999 * 126.07280 * 0.02562 * 13 12 11 39 39 H 1.08996 * 109.46847 * 269.99373 * 15 14 13 40 40 H 1.08997 * 109.47228 * 29.99928 * 15 14 13 41 41 H 1.09000 * 109.46852 * 149.99984 * 15 14 13 42 42 H 1.09001 * 109.47238 * 149.72005 * 18 17 12 43 43 H 1.08995 * 109.47098 * 29.71440 * 18 17 12 44 44 H 0.97005 * 119.99708 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 7 3.7671 2.6020 1.1819 6 6 5.0334 2.7173 0.4542 7 6 3.2758 3.6633 1.8517 8 8 2.2615 3.5499 2.5084 9 6 3.9793 4.9786 1.7858 10 8 5.0484 5.0673 1.2177 11 7 3.4274 6.0674 2.3571 12 6 4.0835 7.2935 2.2961 13 6 5.2799 7.5382 1.6924 14 6 5.5795 8.8913 1.8680 15 6 6.8150 9.5924 1.3649 16 7 4.6062 9.4469 2.5433 17 7 3.6467 8.4660 2.8251 18 6 2.3975 8.6676 3.5635 19 6 1.3001 9.0424 2.6010 20 1 1.5121 9.1229 1.5451 21 6 0.0243 9.2776 3.0679 22 7 -0.9346 9.5993 2.2273 23 14 -0.3423 9.1389 4.8943 24 1 -0.1293 10.4575 5.5434 25 1 -1.7527 8.7153 5.0854 26 1 0.5636 8.1339 5.5062 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5066 1.0920 33 1 2.4773 1.2354 2.1130 34 1 5.8637 2.5552 1.1417 35 1 5.0666 1.9694 -0.3380 36 1 5.1122 3.7128 0.0176 37 1 2.5730 5.9966 2.8108 38 1 5.8904 6.8138 1.1738 39 1 7.5964 9.5403 2.1231 40 1 7.1615 9.1079 0.4521 41 1 6.5807 10.6362 1.1558 42 1 2.5308 9.4675 4.2918 43 1 2.1284 7.7465 4.0804 44 1 -1.8323 9.7644 2.5558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615626047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:46 Heat of formation + Delta-G solvation = 46.978761 kcal Electronic energy + Delta-G solvation = -26830.826616 eV Core-core repulsion = 22979.666315 eV Total energy + Delta-G solvation = -3851.160301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32906 -40.34312 -38.58140 -36.77310 -35.23228 -34.43327 -33.75825 -32.17872 -30.03627 -29.58346 -28.63187 -27.03340 -26.35146 -25.38701 -23.15699 -22.32400 -20.70468 -20.09762 -19.86124 -19.17651 -17.59227 -17.19044 -17.07438 -16.51357 -16.37595 -15.67429 -15.49642 -14.98629 -14.65003 -14.48233 -14.22554 -13.88767 -13.70430 -13.25686 -13.17039 -13.06765 -12.81264 -12.67461 -12.61810 -12.46474 -12.29366 -11.93152 -11.86315 -11.40901 -11.35004 -11.24742 -11.12513 -10.81427 -10.61838 -10.26665 -9.91054 -9.75916 -9.73747 -9.34765 -8.94414 -8.83566 -8.03529 -7.63455 -6.31568 -4.36416 1.18876 1.92796 2.10803 2.53919 3.05214 3.13486 3.15887 3.18762 3.22467 3.48340 3.61702 4.17128 4.19892 4.58612 4.74095 4.86778 4.94327 4.98555 5.06298 5.21111 5.22018 5.42690 5.47863 5.55419 5.65576 5.70265 5.79369 5.94085 5.98008 6.03592 6.08928 6.13113 6.24571 6.32465 6.36561 6.47993 6.50735 6.66633 6.82856 7.20222 7.26211 7.36431 7.45450 7.72033 7.96203 8.24244 8.46829 8.73117 9.22919 10.80605 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.004125 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.470705 B = 6785.543533 C = 9135.405583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.112 4.112 4 C 0.117 3.883 5 N -0.588 5.588 6 C 0.062 3.938 7 C 0.513 3.487 8 O -0.510 6.510 9 C 0.514 3.486 10 O -0.491 6.491 11 N -0.608 5.608 12 C 0.298 3.702 13 C -0.284 4.284 14 C 0.054 3.946 15 C -0.063 4.063 16 N -0.275 5.275 17 N -0.340 5.340 18 C 0.228 3.772 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.427 0.573 38 H 0.165 0.835 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 -17.707 -3.194 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.150 4.150 4 C -0.005 4.005 5 N -0.321 5.321 6 C -0.080 4.080 7 C 0.295 3.705 8 O -0.384 6.384 9 C 0.295 3.705 10 O -0.366 6.366 11 N -0.256 5.256 12 C 0.076 3.924 13 C -0.316 4.316 14 C -0.111 4.111 15 C -0.122 4.122 16 N -0.100 5.100 17 N -0.126 5.126 18 C 0.109 3.891 19 C -0.586 4.586 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.265 0.735 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.246 -16.610 -2.661 19.697 hybrid contribution -0.799 -0.866 0.746 1.395 sum 9.447 -17.476 -1.915 19.958 Atomic orbital electron populations 1.23948 0.96046 1.02131 1.00035 1.22763 0.96027 0.97804 1.00921 1.21143 0.98729 0.96426 0.98738 1.21585 0.94832 0.83988 1.00051 1.47659 1.23858 1.10696 1.49911 1.22467 0.83446 1.05644 0.96428 1.19797 0.84971 0.84885 0.80848 1.90818 1.23877 1.83930 1.39825 1.19914 0.85841 0.84798 0.79928 1.90602 1.20925 1.84590 1.40440 1.42329 1.24517 1.05205 1.53505 1.17953 0.93267 0.80902 1.00292 1.21293 0.98673 0.97221 1.14389 1.22049 0.96523 0.93250 0.99314 1.20044 0.91931 0.99738 1.00462 1.77378 0.99347 1.11933 1.21355 1.49127 1.17791 1.02788 1.42878 1.20011 0.78275 0.98294 0.92514 1.21159 0.91937 1.49851 0.95619 0.90022 1.24804 0.95654 0.93877 0.97981 1.69867 1.02013 1.45229 1.34740 0.86906 0.78580 0.79397 0.85251 1.19464 1.20391 1.18904 0.88398 0.88306 0.87230 0.90714 0.90589 0.89709 0.89169 0.91945 0.91435 0.87254 0.73462 0.81767 0.91240 0.90944 0.91310 0.92970 0.94098 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 14.32 29.02 0.42 -1.13 16 2 C -0.16 -1.24 9.52 -36.03 -0.34 -1.58 16 3 C -0.11 -1.00 5.98 -27.89 -0.17 -1.17 16 4 C 0.12 1.06 5.39 -4.05 -0.02 1.03 16 5 N -0.59 -6.48 2.87 -182.14 -0.52 -7.00 16 6 C 0.06 0.55 9.55 59.85 0.57 1.12 16 7 C 0.51 7.41 7.73 -11.66 -0.09 7.32 16 8 O -0.51 -8.54 16.04 5.48 0.09 -8.46 16 9 C 0.51 8.17 7.73 -11.65 -0.09 8.08 16 10 O -0.49 -7.68 10.26 5.46 0.06 -7.63 16 11 N -0.61 -11.08 5.40 -11.80 -0.06 -11.14 16 12 C 0.30 6.13 7.68 -152.86 -1.17 4.96 16 13 C -0.28 -5.45 9.58 -39.76 -0.38 -5.83 16 14 C 0.05 1.03 7.20 -82.47 -0.59 0.43 16 15 C -0.06 -0.87 10.44 36.01 0.38 -0.49 16 16 N -0.28 -6.18 12.56 33.64 0.42 -5.76 16 17 N -0.34 -7.81 3.62 -61.47 -0.22 -8.03 16 18 C 0.23 5.45 5.09 -5.19 -0.03 5.42 16 19 C -0.55 -15.24 9.94 -34.44 -0.34 -15.59 16 20 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 22 N -0.88 -26.12 13.96 55.43 0.77 -25.34 16 23 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 27 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 28 H 0.10 0.91 7.84 -52.49 -0.41 0.50 16 29 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.07 0.84 7.79 -51.92 -0.40 0.44 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.09 0.93 7.37 -51.93 -0.38 0.55 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.43 8.03 -51.93 -0.42 0.01 16 36 H 0.11 1.18 5.35 -51.94 -0.28 0.90 16 37 H 0.43 7.79 7.46 -40.82 -0.30 7.49 16 38 H 0.17 2.90 5.83 -52.49 -0.31 2.60 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.24 7.58 -51.93 -0.39 0.84 16 43 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -32.53 373.64 -6.68 -39.21 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.21 Total: 8.24 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.96 Total: 4.76 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.39 Total: -57.27 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.14 Total: -16.08 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.53 -6.68 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615626047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.191 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds