Wall clock time and date at job start Tue Mar 31 2020 13:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00294 * 2 1 4 4 C 1.52998 * 109.47374 * 124.99839 * 3 2 1 5 5 N 1.46495 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99919 * 270.00308 * 5 4 3 7 7 C 1.34772 * 120.00349 * 90.00179 * 5 4 3 8 8 O 1.21370 * 119.99862 * 3.62791 * 7 5 4 9 9 C 1.49306 * 120.00352 * 183.62716 * 7 5 4 10 10 O 1.21394 * 119.99786 * 354.16002 * 9 7 5 11 11 N 1.34778 * 120.00130 * 174.16799 * 9 7 5 12 12 C 1.39202 * 119.99815 * 179.97438 * 11 9 7 13 13 C 1.36216 * 126.27206 * 0.18279 * 12 11 9 14 14 C 1.39700 * 107.85682 * 180.26656 * 13 12 11 15 15 C 1.50701 * 125.76777 * 179.72073 * 14 13 12 16 16 N 1.30846 * 108.45875 * 359.73597 * 14 13 12 17 17 N 1.35848 * 126.27274 * 180.02562 * 12 11 9 18 18 C 1.46507 * 126.09610 * 359.97438 * 17 12 11 19 19 C 1.50698 * 109.46834 * 269.71768 * 18 17 12 20 20 H 1.08001 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00159 * 179.72866 * 19 18 17 22 22 N 1.31513 * 120.00206 * 180.27566 * 21 19 18 23 23 Si 1.86799 * 119.99679 * 0.26790 * 21 19 18 24 24 H 1.48502 * 109.47080 * 90.00848 * 23 21 19 25 25 H 1.48508 * 109.47190 * 210.00156 * 23 21 19 26 26 H 1.48496 * 109.47585 * 330.00352 * 23 21 19 27 27 H 1.08006 * 119.99839 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00102 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.46905 * 4.99979 * 3 2 1 31 31 H 1.09003 * 109.47652 * 245.00582 * 3 2 1 32 32 H 1.08995 * 109.46851 * 60.00333 * 4 3 2 33 33 H 1.09003 * 109.47338 * 300.00935 * 4 3 2 34 34 H 1.09009 * 109.46993 * 263.99758 * 6 5 4 35 35 H 1.08995 * 109.47213 * 23.99184 * 6 5 4 36 36 H 1.08996 * 109.47423 * 143.99887 * 6 5 4 37 37 H 0.96994 * 120.00079 * 359.97438 * 11 9 7 38 38 H 1.07999 * 126.07280 * 0.02562 * 13 12 11 39 39 H 1.08996 * 109.46847 * 269.99373 * 15 14 13 40 40 H 1.08997 * 109.47228 * 29.99928 * 15 14 13 41 41 H 1.09000 * 109.46852 * 149.99984 * 15 14 13 42 42 H 1.09001 * 109.47238 * 149.72005 * 18 17 12 43 43 H 1.08995 * 109.47098 * 29.71440 * 18 17 12 44 44 H 0.97005 * 119.99708 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 7 3.7671 2.6020 1.1819 6 6 5.0334 2.7173 0.4542 7 6 3.2758 3.6633 1.8517 8 8 2.2615 3.5499 2.5084 9 6 3.9793 4.9786 1.7858 10 8 5.0484 5.0673 1.2177 11 7 3.4274 6.0674 2.3571 12 6 4.0835 7.2935 2.2961 13 6 5.2799 7.5382 1.6924 14 6 5.5795 8.8913 1.8680 15 6 6.8150 9.5924 1.3649 16 7 4.6062 9.4469 2.5433 17 7 3.6467 8.4660 2.8251 18 6 2.3975 8.6676 3.5635 19 6 1.3001 9.0424 2.6010 20 1 1.5121 9.1229 1.5451 21 6 0.0243 9.2776 3.0679 22 7 -0.9346 9.5993 2.2273 23 14 -0.3423 9.1389 4.8943 24 1 -0.1293 10.4575 5.5434 25 1 -1.7527 8.7153 5.0854 26 1 0.5636 8.1339 5.5062 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5066 1.0920 33 1 2.4773 1.2354 2.1130 34 1 5.8637 2.5552 1.1417 35 1 5.0666 1.9694 -0.3380 36 1 5.1122 3.7128 0.0176 37 1 2.5730 5.9966 2.8108 38 1 5.8904 6.8138 1.1738 39 1 7.5964 9.5403 2.1231 40 1 7.1615 9.1079 0.4521 41 1 6.5807 10.6362 1.1558 42 1 2.5308 9.4675 4.2918 43 1 2.1284 7.7465 4.0804 44 1 -1.8323 9.7644 2.5558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615626047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:45 Heat of formation + Delta-G solvation = 25.365875 kcal Electronic energy + Delta-G solvation = -26831.763821 eV Core-core repulsion = 22979.666315 eV Total energy + Delta-G solvation = -3852.097506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71504 -41.67319 -39.81464 -37.76167 -36.44006 -35.77222 -35.23479 -34.01679 -31.23632 -30.78134 -30.10031 -28.06855 -27.91105 -26.43120 -24.54667 -23.85781 -21.99763 -21.35947 -20.74383 -20.44413 -19.31061 -18.86126 -18.32819 -17.89849 -17.50992 -16.89894 -16.56709 -16.31108 -15.99391 -15.88373 -15.55272 -15.13753 -14.91508 -14.58542 -14.49758 -14.20816 -14.11060 -13.83922 -13.75361 -13.59737 -13.36789 -13.21417 -13.15191 -12.98596 -12.59863 -12.49797 -12.21585 -12.00713 -11.99471 -11.90834 -11.84435 -11.43590 -10.95690 -10.61630 -10.36448 -9.84624 -9.67138 -9.19307 -8.46556 -6.58788 -0.06959 0.77103 1.04187 1.30474 1.32574 1.38036 1.41588 1.73655 1.79462 2.07756 2.20846 2.29442 2.85388 2.98342 3.73185 3.88383 4.04688 4.09460 4.14510 4.32419 4.39974 4.42375 4.44890 4.53576 4.58554 4.62275 4.76521 4.79867 4.88893 4.92664 5.00159 5.03012 5.08243 5.14494 5.15637 5.19197 5.33240 5.71807 5.74897 5.81299 5.88354 5.91402 5.98666 6.16500 6.42556 6.48303 6.67810 6.89827 7.05929 8.69876 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.004125 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.470705 B = 6785.543533 C = 9135.405583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.110 4.110 4 C 0.116 3.884 5 N -0.573 5.573 6 C 0.058 3.942 7 C 0.511 3.489 8 O -0.541 6.541 9 C 0.514 3.486 10 O -0.486 6.486 11 N -0.617 5.617 12 C 0.291 3.709 13 C -0.288 4.288 14 C 0.062 3.938 15 C -0.061 4.061 16 N -0.320 5.320 17 N -0.368 5.368 18 C 0.238 3.762 19 C -0.555 4.555 20 H 0.025 0.975 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.239 1.239 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.424 0.576 38 H 0.182 0.818 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.013 -20.113 -2.595 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.169 4.169 3 C -0.148 4.148 4 C -0.005 4.005 5 N -0.305 5.305 6 C -0.082 4.082 7 C 0.293 3.707 8 O -0.419 6.419 9 C 0.297 3.703 10 O -0.359 6.359 11 N -0.265 5.265 12 C 0.069 3.931 13 C -0.319 4.319 14 C -0.104 4.104 15 C -0.120 4.120 16 N -0.144 5.144 17 N -0.153 5.153 18 C 0.118 3.882 19 C -0.593 4.593 20 H 0.044 0.956 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.768 3.232 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.162 1.162 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.156 0.844 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.261 0.739 38 H 0.199 0.801 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.485 -19.061 -2.105 22.883 hybrid contribution -1.355 -0.186 0.344 1.411 sum 11.129 -19.247 -1.761 22.303 Atomic orbital electron populations 1.24050 0.96617 1.02132 1.01013 1.22918 0.95829 0.98199 0.99948 1.21110 0.98301 0.96046 0.99371 1.21812 0.95564 0.83830 0.99325 1.47838 1.24210 1.10257 1.48210 1.22604 0.82490 1.05788 0.97357 1.19586 0.84682 0.84977 0.81490 1.90806 1.25196 1.84225 1.41684 1.20312 0.85869 0.84898 0.79237 1.90593 1.20731 1.84746 1.39842 1.42493 1.24589 1.05126 1.54307 1.18370 0.93769 0.81121 0.99812 1.21586 0.98360 0.97733 1.14236 1.22946 0.96922 0.93441 0.97067 1.20266 0.90079 0.99510 1.02113 1.77326 1.00522 1.12956 1.23645 1.49005 1.17958 1.03835 1.44524 1.19744 0.77839 0.98966 0.91652 1.21221 0.93916 1.50341 0.93841 0.95648 1.25800 0.95001 0.92922 1.03766 1.70021 1.02751 1.46645 1.37620 0.85730 0.78943 0.80379 0.78120 1.18540 1.19809 1.16179 0.86776 0.90157 0.84415 0.93986 0.89176 0.85608 0.90652 0.90806 0.87842 0.89139 0.73864 0.80140 0.88750 0.88424 0.91083 0.92648 0.92209 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.15 -2.08 9.52 25.65 0.24 -1.83 16 3 C -0.11 -1.80 5.98 29.85 0.18 -1.62 16 4 C 0.12 1.80 5.39 86.38 0.47 2.27 16 5 N -0.57 -11.58 2.87 -848.53 -2.44 -14.01 16 6 C 0.06 0.87 9.55 127.77 1.22 2.09 16 7 C 0.51 14.64 7.73 87.23 0.67 15.31 16 8 O -0.54 -18.49 16.04 -3.31 -0.05 -18.55 16 9 C 0.51 16.31 7.73 87.22 0.67 16.99 16 10 O -0.49 -14.68 10.26 -3.38 -0.03 -14.71 16 11 N -0.62 -22.97 5.40 -309.58 -1.67 -24.64 16 12 C 0.29 12.15 7.68 131.25 1.01 13.16 16 13 C -0.29 -10.87 9.58 22.15 0.21 -10.66 16 14 C 0.06 2.32 7.20 43.06 0.31 2.63 16 15 C -0.06 -1.55 10.44 71.24 0.74 -0.81 16 16 N -0.32 -14.58 12.56 -47.48 -0.60 -15.18 16 17 N -0.37 -17.27 3.62 -348.38 -1.26 -18.53 16 18 C 0.24 11.59 5.09 85.63 0.44 12.02 16 19 C -0.56 -32.33 9.94 25.60 0.25 -32.08 16 20 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 21 C 0.03 1.46 5.47 84.65 0.46 1.92 16 22 N -0.93 -57.37 13.96 21.45 0.30 -57.07 16 23 Si 0.95 41.77 27.47 68.60 1.88 43.65 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 27 H 0.11 1.42 8.06 -2.91 -0.02 1.39 16 28 H 0.08 1.55 7.84 -2.91 -0.02 1.53 16 29 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.04 0.97 7.79 -2.38 -0.02 0.95 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 33 H 0.07 1.46 7.37 -2.39 -0.02 1.44 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.10 0.84 8.03 -2.39 -0.02 0.82 16 36 H 0.09 1.76 5.35 -2.51 -0.01 1.74 16 37 H 0.42 16.05 7.46 -92.71 -0.69 15.36 16 38 H 0.18 6.10 5.83 -2.91 -0.02 6.08 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 2.63 7.58 -2.39 -0.02 2.62 16 43 H 0.06 2.66 6.56 -2.39 -0.02 2.64 16 44 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -75.40 373.64 4.26 -71.15 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.27 Total: 30.74 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 7.86 Total: 17.14 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.67 Total: -129.43 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.09 Total: -33.26 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Total: -75.40 4.26 -71.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615626047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.514 kcal (2) G-P(sol) polarization free energy of solvation -75.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds