Wall clock time and date at job start Tue Mar 31 2020 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36460 * 125.85002 * 274.68692 * 10 9 7 12 12 C 1.34960 * 108.94844 * 179.86369 * 11 10 9 13 13 C 1.41209 * 108.24212 * 0.40420 * 12 11 10 14 14 N 1.32930 * 126.38075 * 179.79346 * 13 12 11 15 15 C 1.33833 * 120.00052 * 359.95211 * 14 13 12 16 16 O 1.21842 * 120.00003 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00347 * 180.02562 * 15 14 13 18 18 C 1.46893 * 120.49550 * 359.71781 * 17 15 14 19 19 C 1.53775 * 108.51585 * 124.31825 * 18 17 15 20 20 C 1.52593 * 109.11787 * 52.52132 * 19 18 17 21 21 C 1.53552 * 113.66150 * 170.81417 * 20 19 18 22 22 C 1.54116 * 85.65327 * 268.12984 * 21 20 19 23 23 O 1.43597 * 113.70067 * 74.49029 * 20 19 18 24 24 C 1.52586 * 113.34713 * 302.59518 * 20 19 18 25 25 C 1.46895 * 120.49687 * 179.97438 * 17 15 14 26 26 N 1.37421 * 107.24258 * 359.74994 * 13 12 11 27 27 H 0.97000 * 126.36660 * 179.97438 * 26 13 12 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08002 * 125.52902 * 0.02822 * 11 10 9 32 32 H 1.07990 * 125.88095 * 180.17375 * 12 11 10 33 33 H 1.08996 * 109.58950 * 244.13626 * 18 17 15 34 34 H 1.09001 * 109.58676 * 4.57652 * 18 17 15 35 35 H 1.08997 * 109.65228 * 292.56861 * 19 18 17 36 36 H 1.09001 * 109.44982 * 172.35165 * 19 18 17 37 37 H 1.09005 * 113.84114 * 22.31218 * 21 20 19 38 38 H 1.08998 * 113.84321 * 153.93884 * 21 20 19 39 39 H 1.08998 * 113.86001 * 91.95474 * 22 21 20 40 40 H 1.09000 * 113.84737 * 223.62548 * 22 21 20 41 41 H 1.09002 * 109.52108 * 297.36653 * 24 20 19 42 42 H 1.09001 * 109.56828 * 177.21296 * 24 20 19 43 43 H 1.09004 * 109.59063 * 355.42462 * 25 17 15 44 44 H 1.09007 * 109.59089 * 115.71178 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7910 -4.1565 -1.1150 12 6 3.6080 -5.1586 -0.7281 13 6 3.5360 -5.2698 0.6778 14 7 4.1930 -6.1433 1.4343 15 6 5.0185 -7.0314 0.8678 16 8 5.1681 -7.0391 -0.3414 17 7 5.6843 -7.9174 1.6347 18 6 5.5168 -7.9140 3.0940 19 6 5.0730 -9.3178 3.5380 20 6 6.0445 -10.3507 2.9743 21 6 5.8329 -11.7651 3.5332 22 6 6.8706 -11.3711 4.6024 23 8 7.3112 -10.3807 3.6500 24 6 6.1613 -10.3043 1.4536 25 6 6.5925 -8.8974 1.0242 26 7 2.6610 -4.3061 1.1184 27 1 2.4072 -4.1374 2.0392 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 2.6309 -3.8352 -2.1336 32 1 4.2100 -5.7725 -1.3815 33 1 6.4639 -7.6597 3.5699 34 1 4.7574 -7.1836 3.3730 35 1 4.0692 -9.5201 3.1645 36 1 5.0752 -9.3718 4.6267 37 1 4.8328 -11.9363 3.9317 38 1 6.1683 -12.5578 2.8645 39 1 6.4330 -10.9488 5.5069 40 1 7.6095 -12.1461 4.8060 41 1 5.1957 -10.5414 1.0068 42 1 6.9040 -11.0300 1.1222 43 1 6.5423 -8.8153 -0.0616 44 1 7.6127 -8.7078 1.3582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619727220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:34 Heat of formation + Delta-G solvation = 67.476689 kcal Electronic energy + Delta-G solvation = -26633.955624 eV Core-core repulsion = 22783.684179 eV Total energy + Delta-G solvation = -3850.271444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16797 -40.73435 -38.94122 -36.13779 -34.19521 -32.98597 -31.76992 -31.20120 -30.92717 -30.37098 -29.32813 -26.75627 -25.19244 -23.49529 -23.25959 -22.32234 -21.31740 -20.98431 -19.76067 -18.69685 -17.19590 -16.84435 -16.43812 -16.16671 -15.98871 -15.76356 -15.31069 -14.99882 -14.78258 -14.46812 -14.24503 -14.00490 -13.50924 -13.33591 -13.18022 -12.85815 -12.70947 -12.59877 -12.47314 -12.06976 -11.94173 -11.71861 -11.36524 -11.31036 -11.22690 -11.03459 -10.74460 -10.53463 -10.40835 -10.34241 -9.71761 -9.63335 -9.56108 -9.00644 -8.90513 -8.27101 -8.18875 -6.85914 -6.46826 -4.64250 1.81414 2.10995 3.08399 3.13827 3.15553 3.19433 3.43218 3.50900 4.03662 4.07309 4.44180 4.54059 4.63208 4.67656 4.82488 4.90729 4.94576 5.12521 5.22284 5.29694 5.35064 5.36136 5.45536 5.56941 5.58023 5.68395 5.87429 5.92123 5.93863 6.00301 6.04153 6.09515 6.14314 6.27346 6.40590 6.55153 6.57837 6.77614 7.16886 7.32945 7.40762 7.53018 7.66010 7.86343 8.26211 8.44612 8.50277 9.06207 9.62510 10.53736 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002286 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.161369 B =12246.830124 C =12473.967916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.256 3.744 10 N -0.347 5.347 11 C 0.161 3.839 12 C -0.333 4.333 13 C 0.486 3.514 14 N -0.710 5.710 15 C 0.689 3.311 16 O -0.632 6.632 17 N -0.611 5.611 18 C 0.129 3.871 19 C -0.134 4.134 20 C 0.096 3.904 21 C -0.182 4.182 22 C 0.032 3.968 23 O -0.370 6.370 24 C -0.122 4.122 25 C 0.130 3.870 26 N -0.472 5.472 27 H 0.444 0.556 28 H 0.272 0.728 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.186 0.814 32 H 0.183 0.817 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 -17.933 5.817 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.133 5.133 11 C 0.016 3.984 12 C -0.366 4.366 13 C 0.233 3.767 14 N -0.475 5.475 15 C 0.390 3.610 16 O -0.514 6.514 17 N -0.347 5.347 18 C 0.006 3.994 19 C -0.173 4.173 20 C 0.056 3.944 21 C -0.220 4.220 22 C -0.045 4.045 23 O -0.289 6.289 24 C -0.161 4.161 25 C 0.006 3.994 26 N -0.194 5.194 27 H 0.291 0.709 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.203 0.797 32 H 0.200 0.800 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.388 -17.464 6.090 19.567 hybrid contribution 0.220 0.875 0.030 0.903 sum 6.608 -16.589 6.120 18.876 Atomic orbital electron populations 1.69891 1.06127 1.28365 1.48005 1.24957 0.95016 0.99724 0.93838 0.86346 0.79428 0.81397 0.79202 1.19677 1.20827 1.19859 1.21387 0.94055 0.89581 1.54571 0.91281 1.20015 0.85612 0.79808 1.00609 1.47961 1.40074 1.28867 0.96348 1.22800 0.91438 0.92129 0.92012 1.22385 1.11730 1.07276 0.95223 1.18731 0.83860 0.84526 0.89608 1.68014 1.25825 1.16846 1.36801 1.16542 0.80048 0.80950 0.83483 1.90713 1.70249 1.75421 1.15032 1.46769 1.46711 1.34892 1.06319 1.21468 1.01689 0.95832 0.80448 1.22153 0.98701 0.95774 1.00656 1.22342 0.84427 0.93728 0.93872 1.24712 1.00662 0.98219 0.98385 1.23815 0.96334 0.91168 0.93181 1.89701 1.30728 1.62896 1.45547 1.21924 1.02884 0.98510 0.92764 1.21268 0.92295 0.86031 0.99789 1.44425 1.42059 1.29374 1.03590 0.70946 0.91814 0.93161 0.91474 0.79695 0.80047 0.92565 0.87795 0.90201 0.90748 0.90876 0.88913 0.90346 0.89463 0.90149 0.90295 0.88902 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.56 -13.30 9.39 -34.44 -0.32 -13.62 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.26 5.34 6.19 -5.20 -0.03 5.30 16 10 N -0.35 -6.45 3.63 -62.25 -0.23 -6.68 16 11 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 12 C -0.33 -6.30 9.52 -39.62 -0.38 -6.67 16 13 C 0.49 9.47 8.07 -155.29 -1.25 8.22 16 14 N -0.71 -14.02 9.03 -15.79 -0.14 -14.16 16 15 C 0.69 13.82 8.21 -87.76 -0.72 13.09 16 16 O -0.63 -13.94 12.65 5.06 0.06 -13.87 16 17 N -0.61 -10.06 2.93 -178.35 -0.52 -10.59 16 18 C 0.13 1.80 6.47 -3.43 -0.02 1.78 16 19 C -0.13 -1.49 5.48 -26.54 -0.15 -1.63 16 20 C 0.10 1.03 1.04 -90.97 -0.09 0.93 16 21 C -0.18 -1.47 7.52 -25.86 -0.19 -1.66 16 22 C 0.03 0.26 8.85 37.52 0.33 0.59 16 23 O -0.37 -4.37 12.11 -35.23 -0.43 -4.80 16 24 C -0.12 -1.38 5.55 -26.79 -0.15 -1.53 16 25 C 0.13 1.85 6.44 -3.67 -0.02 1.83 16 26 N -0.47 -8.42 7.38 31.33 0.23 -8.19 16 27 H 0.44 6.97 8.96 -182.55 -1.64 5.33 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.19 2.51 8.06 -52.49 -0.42 2.08 16 32 H 0.18 3.63 5.77 -52.49 -0.30 3.33 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.54 6.82 -51.93 -0.35 1.19 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.43 6.97 -51.93 -0.36 1.07 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -29.86 360.83 -10.80 -40.66 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.64 Total: 8.89 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -3.29 Total: 10.79 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.08 Total: -61.43 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.36 Total: -18.67 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.86 -10.80 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619727220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.134 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds