Wall clock time and date at job start Tue Mar 31 2020 12:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36460 * 125.85002 * 274.68692 * 10 9 7 12 12 C 1.34960 * 108.94844 * 179.86369 * 11 10 9 13 13 C 1.41209 * 108.24212 * 0.40420 * 12 11 10 14 14 N 1.32930 * 126.38075 * 179.79346 * 13 12 11 15 15 C 1.33833 * 120.00052 * 359.95211 * 14 13 12 16 16 O 1.21842 * 120.00003 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00347 * 180.02562 * 15 14 13 18 18 C 1.46893 * 120.49550 * 359.71781 * 17 15 14 19 19 C 1.53775 * 108.51585 * 124.31825 * 18 17 15 20 20 C 1.52593 * 109.11787 * 52.52132 * 19 18 17 21 21 C 1.53552 * 113.66150 * 170.81417 * 20 19 18 22 22 C 1.54116 * 85.65327 * 268.12984 * 21 20 19 23 23 O 1.43597 * 113.70067 * 74.49029 * 20 19 18 24 24 C 1.52586 * 113.34713 * 302.59518 * 20 19 18 25 25 C 1.46895 * 120.49687 * 179.97438 * 17 15 14 26 26 N 1.37421 * 107.24258 * 359.74994 * 13 12 11 27 27 H 0.97000 * 126.36660 * 179.97438 * 26 13 12 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08002 * 125.52902 * 0.02822 * 11 10 9 32 32 H 1.07990 * 125.88095 * 180.17375 * 12 11 10 33 33 H 1.08996 * 109.58950 * 244.13626 * 18 17 15 34 34 H 1.09001 * 109.58676 * 4.57652 * 18 17 15 35 35 H 1.08997 * 109.65228 * 292.56861 * 19 18 17 36 36 H 1.09001 * 109.44982 * 172.35165 * 19 18 17 37 37 H 1.09005 * 113.84114 * 22.31218 * 21 20 19 38 38 H 1.08998 * 113.84321 * 153.93884 * 21 20 19 39 39 H 1.08998 * 113.86001 * 91.95474 * 22 21 20 40 40 H 1.09000 * 113.84737 * 223.62548 * 22 21 20 41 41 H 1.09002 * 109.52108 * 297.36653 * 24 20 19 42 42 H 1.09001 * 109.56828 * 177.21296 * 24 20 19 43 43 H 1.09004 * 109.59063 * 355.42462 * 25 17 15 44 44 H 1.09007 * 109.59089 * 115.71178 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7910 -4.1565 -1.1150 12 6 3.6080 -5.1586 -0.7281 13 6 3.5360 -5.2698 0.6778 14 7 4.1930 -6.1433 1.4343 15 6 5.0185 -7.0314 0.8678 16 8 5.1681 -7.0391 -0.3414 17 7 5.6843 -7.9174 1.6347 18 6 5.5168 -7.9140 3.0940 19 6 5.0730 -9.3178 3.5380 20 6 6.0445 -10.3507 2.9743 21 6 5.8329 -11.7651 3.5332 22 6 6.8706 -11.3711 4.6024 23 8 7.3112 -10.3807 3.6500 24 6 6.1613 -10.3043 1.4536 25 6 6.5925 -8.8974 1.0242 26 7 2.6610 -4.3061 1.1184 27 1 2.4072 -4.1374 2.0392 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 2.6309 -3.8352 -2.1336 32 1 4.2100 -5.7725 -1.3815 33 1 6.4639 -7.6597 3.5699 34 1 4.7574 -7.1836 3.3730 35 1 4.0692 -9.5201 3.1645 36 1 5.0752 -9.3718 4.6267 37 1 4.8328 -11.9363 3.9317 38 1 6.1683 -12.5578 2.8645 39 1 6.4330 -10.9488 5.5069 40 1 7.6095 -12.1461 4.8060 41 1 5.1957 -10.5414 1.0068 42 1 6.9040 -11.0300 1.1222 43 1 6.5423 -8.8153 -0.0616 44 1 7.6127 -8.7078 1.3582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619727220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:33 Heat of formation + Delta-G solvation = 49.245835 kcal Electronic energy + Delta-G solvation = -26634.746173 eV Core-core repulsion = 22783.684179 eV Total energy + Delta-G solvation = -3851.061993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26839 -41.94384 -40.31987 -37.37717 -35.87584 -34.64391 -32.96029 -32.50576 -32.15942 -31.81329 -30.10975 -28.40264 -26.26784 -24.86451 -24.49115 -23.53503 -22.70821 -22.26741 -20.84485 -19.80701 -18.88028 -18.41147 -17.72285 -17.30242 -16.88013 -16.77173 -16.62241 -16.57435 -15.98579 -15.83276 -15.64586 -15.31303 -14.65361 -14.57887 -14.43472 -14.24001 -14.14923 -13.79182 -13.64423 -13.46303 -13.08164 -12.94966 -12.72289 -12.65529 -12.30179 -12.22505 -12.20215 -12.08177 -11.50134 -11.25058 -11.20978 -11.16908 -10.75914 -10.48836 -10.47951 -9.81557 -9.50901 -8.52115 -8.17572 -6.54479 0.33513 0.62812 1.40112 1.42704 1.49687 1.69450 2.18151 2.32213 2.73262 2.93198 3.00348 3.14367 3.36856 3.74784 3.75205 3.94839 4.06114 4.15249 4.27431 4.32346 4.35720 4.43275 4.46064 4.53817 4.63378 4.72992 4.80216 4.85538 4.88300 4.90905 4.95668 5.00989 5.03544 5.06855 5.22813 5.30696 5.34045 5.52648 5.53565 5.72515 5.86584 5.92968 6.17172 6.34821 6.59039 6.84981 7.00860 7.19137 8.10651 8.67334 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002286 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.161369 B =12246.830124 C =12473.967916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.566 4.566 8 H 0.058 0.942 9 C 0.269 3.731 10 N -0.351 5.351 11 C 0.177 3.823 12 C -0.347 4.347 13 C 0.471 3.529 14 N -0.715 5.715 15 C 0.674 3.326 16 O -0.661 6.661 17 N -0.610 5.610 18 C 0.127 3.873 19 C -0.126 4.126 20 C 0.086 3.914 21 C -0.169 4.169 22 C 0.029 3.971 23 O -0.397 6.397 24 C -0.115 4.115 25 C 0.127 3.873 26 N -0.466 5.466 27 H 0.451 0.549 28 H 0.274 0.726 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.222 0.778 32 H 0.171 0.829 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -18.895 6.549 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.604 4.604 8 H 0.077 0.923 9 C 0.152 3.848 10 N -0.137 5.137 11 C 0.033 3.967 12 C -0.379 4.379 13 C 0.218 3.782 14 N -0.480 5.480 15 C 0.375 3.625 16 O -0.546 6.546 17 N -0.345 5.345 18 C 0.004 3.996 19 C -0.165 4.165 20 C 0.047 3.953 21 C -0.206 4.206 22 C -0.047 4.047 23 O -0.317 6.317 24 C -0.153 4.153 25 C 0.004 3.996 26 N -0.190 5.190 27 H 0.300 0.700 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.188 0.812 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.586 -18.457 6.859 20.762 hybrid contribution 0.217 1.148 -0.172 1.180 sum 6.803 -17.309 6.688 19.764 Atomic orbital electron populations 1.69954 1.07073 1.29023 1.48976 1.25589 0.95640 1.02308 0.93698 0.85526 0.78336 0.78460 0.78934 1.19373 1.20444 1.20153 1.21588 0.93724 0.90985 1.54093 0.92333 1.19711 0.85429 0.79318 1.00352 1.47831 1.40126 1.28725 0.96977 1.23315 0.89687 0.90728 0.92989 1.22278 1.12564 1.08096 0.94989 1.18940 0.84197 0.84876 0.90199 1.68073 1.26013 1.17031 1.36843 1.16887 0.80533 0.81571 0.83545 1.90683 1.71337 1.76335 1.16238 1.46918 1.46066 1.34271 1.07256 1.21553 1.01340 0.97761 0.78922 1.22084 0.98624 0.93826 1.01924 1.22370 0.84313 0.95520 0.93120 1.24614 1.01537 0.96348 0.98106 1.24068 0.96781 0.90764 0.93078 1.89683 1.31298 1.64060 1.46658 1.21874 1.03213 0.96554 0.93692 1.21369 0.92022 0.87483 0.98721 1.44382 1.41741 1.28961 1.03883 0.70002 0.91713 0.93842 0.91115 0.76144 0.81194 0.92656 0.89014 0.90361 0.88630 0.89501 0.87892 0.89156 0.87833 0.90277 0.88534 0.90669 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.76 13.29 21.45 0.28 -45.47 16 2 C 0.03 1.44 5.46 84.66 0.46 1.90 16 3 Si 0.96 38.97 29.54 68.60 2.03 41.00 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.57 -26.50 9.39 25.60 0.24 -26.26 16 8 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.27 10.99 6.19 85.64 0.53 11.52 16 10 N -0.35 -12.76 3.63 -350.85 -1.28 -14.03 16 11 C 0.18 5.84 11.45 83.22 0.95 6.79 16 12 C -0.35 -13.12 9.52 22.25 0.21 -12.91 16 13 C 0.47 18.50 8.07 133.95 1.08 19.58 16 14 N -0.71 -28.71 9.03 -322.55 -2.91 -31.62 16 15 C 0.67 27.71 8.21 179.35 1.47 29.18 16 16 O -0.66 -30.11 12.65 -4.80 -0.06 -30.18 16 17 N -0.61 -20.40 2.93 -836.34 -2.45 -22.86 16 18 C 0.13 3.52 6.47 86.57 0.56 4.08 16 19 C -0.13 -2.61 5.48 30.72 0.17 -2.44 16 20 C 0.09 1.69 1.04 -11.02 -0.01 1.68 16 21 C -0.17 -2.21 7.52 31.16 0.23 -1.97 16 22 C 0.03 0.39 8.85 72.22 0.64 1.03 16 23 O -0.40 -8.63 12.11 -148.98 -1.80 -10.43 16 24 C -0.12 -2.48 5.55 30.56 0.17 -2.31 16 25 C 0.13 3.66 6.44 86.40 0.56 4.22 16 26 N -0.47 -16.52 7.38 -54.79 -0.40 -16.93 16 27 H 0.45 14.10 8.96 -213.28 -1.91 12.19 16 28 H 0.27 13.10 8.31 -92.70 -0.77 12.33 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.22 5.47 8.06 -2.91 -0.02 5.44 16 32 H 0.17 6.96 5.77 -2.92 -0.02 6.94 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 2.75 6.82 -2.39 -0.02 2.73 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.57 7.51 -2.39 -0.02 1.55 16 37 H 0.09 0.92 8.09 -2.38 -0.02 0.90 16 38 H 0.10 1.16 8.09 -2.39 -0.02 1.14 16 39 H 0.09 0.98 7.79 -2.39 -0.02 0.96 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 2.40 6.97 -2.38 -0.02 2.39 16 44 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -63.70 360.83 -0.22 -63.91 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.89 Total: 32.50 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 7.27 Total: 34.10 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.76 Total: -130.91 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.86 Total: -40.61 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -63.70 -0.22 -63.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619727220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.161 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds