Wall clock time and date at job start Tue Mar 31 2020 12:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47414 * 270.00053 * 3 2 1 5 5 H 1.48506 * 109.46908 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47394 * 149.99924 * 3 2 1 7 7 C 1.38988 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00326 * 180.02562 * 7 2 1 9 9 N 1.37328 * 119.99491 * 359.97438 * 7 2 1 10 10 C 1.36491 * 126.06529 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50695 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08222 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99797 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00586 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 12 17 17 C 1.34774 * 120.00072 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99838 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47154 * 300.00044 * 19 17 16 21 21 C 1.52997 * 109.47086 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47457 * 59.99624 * 21 20 19 23 23 C 1.52997 * 109.47232 * 299.99930 * 22 21 20 24 24 C 1.52996 * 109.46975 * 60.00237 * 23 22 21 25 25 C 1.40647 * 107.83500 * 0.26017 * 11 10 9 26 26 N 1.30907 * 108.38908 * 359.55598 * 25 11 10 27 27 H 0.96998 * 120.00177 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.24593 * 0.04060 * 10 9 7 29 29 H 0.96998 * 120.00036 * 359.97438 * 12 11 10 30 30 H 1.09001 * 109.47438 * 59.99564 * 15 13 12 31 31 H 1.09004 * 109.47113 * 299.99819 * 15 13 12 32 32 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 33 33 H 1.09001 * 109.47324 * 59.99585 * 19 17 16 34 34 H 1.09001 * 109.46630 * 299.99966 * 20 19 17 35 35 H 1.09000 * 109.47188 * 60.00116 * 20 19 17 36 36 H 1.09001 * 109.46989 * 299.99295 * 21 20 19 37 37 H 1.09000 * 109.47058 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47076 * 60.00584 * 22 21 20 40 40 H 1.09001 * 109.46922 * 300.00149 * 23 22 21 41 41 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47261 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.47554 * 59.99633 * 24 23 22 44 44 H 1.07999 * 125.80602 * 179.70733 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0016 10 6 1.8750 -3.6404 0.0027 11 6 0.8579 -4.5384 0.0029 12 7 0.9892 -5.9382 0.0045 13 6 -0.1100 -6.7181 0.0051 14 8 -1.2126 -6.2124 0.0047 15 6 0.0307 -8.2186 0.0062 16 7 -1.2989 -8.8338 0.0072 17 6 -1.4203 -10.1761 0.0078 18 8 -0.4289 -10.8747 0.0079 19 6 -2.7880 -10.8089 0.0083 20 6 -3.5535 -10.3679 1.2576 21 6 -4.9418 -11.0109 1.2584 22 6 -4.7985 -12.5341 1.2592 23 6 -4.0330 -12.9751 0.0100 24 6 -2.6447 -12.3322 0.0092 25 6 -0.3512 -3.8199 -0.0041 26 7 -0.0716 -2.5410 0.0012 27 1 -0.4850 0.8400 0.0004 28 1 2.9301 -3.8707 0.0035 29 1 1.8708 -6.3426 0.0052 30 1 0.5763 -8.5317 0.8963 31 1 0.5762 -8.5330 -0.8837 32 1 -2.0918 -8.2750 0.0068 33 1 -3.3337 -10.4954 -0.8817 34 1 -3.0078 -10.6814 2.1475 35 1 -3.6553 -9.2827 1.2571 36 1 -5.4877 -10.6978 0.3684 37 1 -5.4873 -10.6964 2.1481 38 1 -5.7876 -12.9922 1.2602 39 1 -4.2527 -12.8472 2.1492 40 1 -4.5790 -12.6619 -0.8800 41 1 -3.9305 -14.0602 0.0108 42 1 -2.0995 -12.6459 -0.8810 43 1 -2.0988 -12.6452 0.8991 44 1 -1.3418 -4.2500 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735037385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:32 Heat of formation + Delta-G solvation = -12.918719 kcal Electronic energy + Delta-G solvation = -25909.583940 eV Core-core repulsion = 22055.826289 eV Total energy + Delta-G solvation = -3853.757651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49644 -39.88652 -38.73316 -37.69284 -34.69010 -34.17666 -33.22718 -31.57888 -30.99774 -30.31747 -28.68694 -27.03913 -24.81988 -23.63858 -22.80723 -21.21503 -20.63017 -20.47156 -19.90935 -19.46659 -17.87297 -17.38828 -16.30336 -16.02628 -15.87032 -15.47536 -15.31676 -15.00617 -14.75288 -14.39978 -14.36402 -13.99394 -13.83255 -13.35835 -13.13385 -12.91149 -12.85915 -12.65463 -12.46374 -12.35608 -11.71791 -11.56136 -11.49096 -11.42024 -11.29167 -11.00119 -10.93741 -10.72154 -10.56422 -10.39955 -10.26770 -9.83373 -9.38994 -9.24911 -9.19692 -8.86529 -8.11475 -6.77609 -6.59858 -4.27503 2.51293 2.68867 2.88016 2.98038 3.03192 3.07876 3.61877 3.61998 3.84876 4.34531 4.35379 4.39516 4.43952 4.63464 4.88294 4.88557 4.94680 4.98188 5.09036 5.10326 5.17541 5.21832 5.31055 5.32105 5.34924 5.54367 5.74347 5.76781 5.80516 5.87848 5.94117 6.01709 6.13691 6.18643 6.24069 6.39050 6.82366 6.89614 7.01682 7.17991 7.42119 7.80686 8.02731 8.13597 8.21284 8.53032 8.72890 9.32645 9.61523 10.36109 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036958 B = 0.002006 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.444281 B =13957.826432 C =14577.388624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.064 4.064 12 N -0.616 5.616 13 C 0.492 3.508 14 O -0.536 6.536 15 C 0.104 3.896 16 N -0.714 5.714 17 C 0.519 3.481 18 O -0.546 6.546 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.032 4.032 26 N -0.261 5.261 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.400 0.600 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -19.965 0.918 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.233 4.233 11 C -0.169 4.169 12 N -0.258 5.258 13 C 0.277 3.723 14 O -0.414 6.414 15 C -0.024 4.024 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.423 6.423 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.136 4.136 25 C -0.207 4.207 26 N -0.092 5.092 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.633 -18.730 0.926 19.581 hybrid contribution 1.033 0.015 -0.036 1.034 sum -4.600 -18.715 0.891 19.293 Atomic orbital electron populations 1.70209 1.06147 1.28056 1.35167 1.25652 0.95723 1.00321 0.95447 0.85819 0.79399 0.79886 0.79000 1.19561 1.20060 1.18780 1.19889 0.91691 0.80520 1.53424 0.86554 1.44563 1.04055 1.03333 1.38916 1.21271 0.96885 0.85346 1.19789 1.17252 0.94395 0.81000 1.24291 1.42369 1.08155 1.04700 1.70591 1.20213 0.84939 0.88330 0.78794 1.90587 1.25747 1.74494 1.50613 1.20990 0.86523 0.90477 1.04413 1.45765 1.09126 1.06899 1.75142 1.20691 0.91695 0.81618 0.75482 1.90689 1.39668 1.62129 1.49812 1.21345 0.93056 0.97211 1.00937 1.21560 0.95989 1.00832 0.96713 1.21526 0.96355 0.95336 1.02343 1.21570 1.00182 0.95829 0.98385 1.21562 0.95777 1.00145 0.98256 1.21342 0.96834 0.92072 1.03386 1.24097 0.97968 0.90761 1.07880 1.78264 0.90133 1.15049 1.25731 0.91413 0.83606 0.76654 0.88712 0.88701 0.74868 0.88369 0.91310 0.91012 0.91639 0.91544 0.92007 0.91911 0.91889 0.91725 0.91249 0.91178 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.27 11.81 55.49 0.66 -20.61 16 2 C 0.05 1.17 5.50 -17.51 -0.10 1.07 16 3 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.32 -8.43 10.25 -14.81 -0.15 -8.58 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.82 3.74 -11.41 -0.04 -3.86 16 10 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 11 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 12 N -0.62 -10.28 5.47 -10.00 -0.05 -10.34 16 13 C 0.49 7.88 7.87 -10.98 -0.09 7.80 16 14 O -0.54 -10.38 12.82 5.54 0.07 -10.31 16 15 C 0.10 1.27 6.15 -5.19 -0.03 1.23 16 16 N -0.71 -8.52 5.42 -61.47 -0.33 -8.85 16 17 C 0.52 6.20 7.15 -10.99 -0.08 6.12 16 18 O -0.55 -8.17 15.98 5.55 0.09 -8.08 16 19 C -0.10 -0.93 2.53 -91.77 -0.23 -1.16 16 20 C -0.11 -0.91 5.10 -26.73 -0.14 -1.05 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 23 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 24 C -0.10 -0.85 4.49 -26.73 -0.12 -0.97 16 25 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 26 N -0.26 -7.46 10.40 30.80 0.32 -7.14 16 27 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 29 H 0.40 5.05 8.83 -40.82 -0.36 4.69 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.41 4.86 6.86 -40.82 -0.28 4.58 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -33.63 363.54 -7.58 -41.21 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.38 Total: 12.30 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.36 Total: -3.46 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.55 Total: -50.81 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.16 Total: -18.39 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.63 -7.58 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735037385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.290 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds