Wall clock time and date at job start Tue Mar 31 2020 12:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47414 * 270.00053 * 3 2 1 5 5 H 1.48506 * 109.46908 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47394 * 149.99924 * 3 2 1 7 7 C 1.38988 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00326 * 180.02562 * 7 2 1 9 9 N 1.37328 * 119.99491 * 359.97438 * 7 2 1 10 10 C 1.36491 * 126.06529 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50695 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08222 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99797 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00586 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 12 17 17 C 1.34774 * 120.00072 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99838 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47154 * 300.00044 * 19 17 16 21 21 C 1.52997 * 109.47086 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47457 * 59.99624 * 21 20 19 23 23 C 1.52997 * 109.47232 * 299.99930 * 22 21 20 24 24 C 1.52996 * 109.46975 * 60.00237 * 23 22 21 25 25 C 1.40647 * 107.83500 * 0.26017 * 11 10 9 26 26 N 1.30907 * 108.38908 * 359.55598 * 25 11 10 27 27 H 0.96998 * 120.00177 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.24593 * 0.04060 * 10 9 7 29 29 H 0.96998 * 120.00036 * 359.97438 * 12 11 10 30 30 H 1.09001 * 109.47438 * 59.99564 * 15 13 12 31 31 H 1.09004 * 109.47113 * 299.99819 * 15 13 12 32 32 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 33 33 H 1.09001 * 109.47324 * 59.99585 * 19 17 16 34 34 H 1.09001 * 109.46630 * 299.99966 * 20 19 17 35 35 H 1.09000 * 109.47188 * 60.00116 * 20 19 17 36 36 H 1.09001 * 109.46989 * 299.99295 * 21 20 19 37 37 H 1.09000 * 109.47058 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47076 * 60.00584 * 22 21 20 40 40 H 1.09001 * 109.46922 * 300.00149 * 23 22 21 41 41 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47261 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.47554 * 59.99633 * 24 23 22 44 44 H 1.07999 * 125.80602 * 179.70733 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0016 10 6 1.8750 -3.6404 0.0027 11 6 0.8579 -4.5384 0.0029 12 7 0.9892 -5.9382 0.0045 13 6 -0.1100 -6.7181 0.0051 14 8 -1.2126 -6.2124 0.0047 15 6 0.0307 -8.2186 0.0062 16 7 -1.2989 -8.8338 0.0072 17 6 -1.4203 -10.1761 0.0078 18 8 -0.4289 -10.8747 0.0079 19 6 -2.7880 -10.8089 0.0083 20 6 -3.5535 -10.3679 1.2576 21 6 -4.9418 -11.0109 1.2584 22 6 -4.7985 -12.5341 1.2592 23 6 -4.0330 -12.9751 0.0100 24 6 -2.6447 -12.3322 0.0092 25 6 -0.3512 -3.8199 -0.0041 26 7 -0.0716 -2.5410 0.0012 27 1 -0.4850 0.8400 0.0004 28 1 2.9301 -3.8707 0.0035 29 1 1.8708 -6.3426 0.0052 30 1 0.5763 -8.5317 0.8963 31 1 0.5762 -8.5330 -0.8837 32 1 -2.0918 -8.2750 0.0068 33 1 -3.3337 -10.4954 -0.8817 34 1 -3.0078 -10.6814 2.1475 35 1 -3.6553 -9.2827 1.2571 36 1 -5.4877 -10.6978 0.3684 37 1 -5.4873 -10.6964 2.1481 38 1 -5.7876 -12.9922 1.2602 39 1 -4.2527 -12.8472 2.1492 40 1 -4.5790 -12.6619 -0.8800 41 1 -3.9305 -14.0602 0.0108 42 1 -2.0995 -12.6459 -0.8810 43 1 -2.0988 -12.6452 0.8991 44 1 -1.3418 -4.2500 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735037385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:32 Heat of formation + Delta-G solvation = -36.220646 kcal Electronic energy + Delta-G solvation = -25910.594387 eV Core-core repulsion = 22055.826289 eV Total energy + Delta-G solvation = -3854.768098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81214 -41.25380 -40.18716 -38.47834 -36.09102 -35.46840 -34.99800 -32.38708 -32.16000 -31.60851 -30.18262 -28.46469 -26.62052 -24.45108 -23.43132 -22.91454 -22.03319 -21.47958 -21.20274 -20.60469 -19.37302 -18.70170 -17.54997 -17.37517 -17.10191 -16.96264 -16.56426 -16.15497 -15.82738 -15.53857 -15.23603 -15.10875 -14.99797 -14.78573 -14.71431 -14.27370 -13.77672 -13.49526 -13.47584 -13.30474 -13.19904 -13.06646 -12.90663 -12.85598 -12.21963 -12.09113 -12.02393 -11.87387 -11.55505 -11.34083 -11.02891 -11.00131 -10.89811 -10.78316 -10.71673 -10.22025 -10.10353 -8.55024 -8.47255 -6.24497 1.17474 1.39970 1.46503 1.57452 1.58332 1.77857 1.85281 2.14057 2.47042 2.50314 2.89546 3.08934 3.58789 3.72169 3.79656 3.81094 4.23139 4.28416 4.31193 4.35511 4.39249 4.45054 4.47827 4.57466 4.59888 4.61500 4.73079 4.98342 5.00120 5.04360 5.13554 5.18168 5.25577 5.26521 5.28077 5.29614 5.38197 5.41967 5.42868 5.57630 5.95551 6.30064 6.45325 6.66207 6.73560 7.15045 7.28556 7.45897 7.68000 8.52122 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036958 B = 0.002006 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.444281 B =13957.826432 C =14577.388624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.079 4.079 11 C -0.047 4.047 12 N -0.609 5.609 13 C 0.496 3.504 14 O -0.569 6.569 15 C 0.115 3.885 16 N -0.715 5.715 17 C 0.519 3.481 18 O -0.577 6.577 19 C -0.100 4.100 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.096 4.096 25 C -0.056 4.056 26 N -0.311 5.311 27 H 0.276 0.724 28 H 0.188 0.812 29 H 0.423 0.577 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -21.153 0.848 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.062 4.938 10 C -0.229 4.229 11 C -0.153 4.153 12 N -0.254 5.254 13 C 0.284 3.716 14 O -0.448 6.448 15 C -0.013 4.013 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.121 4.121 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.134 4.134 25 C -0.232 4.232 26 N -0.143 5.143 27 H 0.086 0.914 28 H 0.205 0.795 29 H 0.260 0.740 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.253 0.747 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.463 -19.970 0.858 20.481 hybrid contribution 0.660 0.191 -0.013 0.687 sum -3.803 -19.779 0.845 20.159 Atomic orbital electron populations 1.70386 1.08376 1.29085 1.37401 1.26866 0.96488 1.04319 0.94186 0.84603 0.78310 0.74152 0.79214 1.18931 1.20243 1.16756 1.20606 0.92951 0.80903 1.54043 0.84199 1.44841 1.03660 1.04818 1.40470 1.22023 0.98905 0.84209 1.17759 1.17303 0.92851 0.83519 1.21633 1.42293 1.09856 1.02432 1.70837 1.20896 0.84046 0.89812 0.76872 1.90583 1.27181 1.75515 1.51540 1.20976 0.87147 0.87027 1.06126 1.45836 1.09091 1.07071 1.74967 1.21187 0.92465 0.81226 0.74416 1.90675 1.40924 1.62665 1.51357 1.21391 0.91487 0.97192 1.02016 1.21544 0.96665 1.00812 0.95824 1.21529 0.95393 0.95493 1.02960 1.21574 1.00730 0.95583 0.97999 1.21544 0.94511 1.00447 0.98800 1.21316 0.97904 0.91929 1.02264 1.24208 0.99090 0.90852 1.09035 1.78155 0.92012 1.16717 1.27415 0.91406 0.79500 0.73954 0.86919 0.86836 0.74712 0.86893 0.92134 0.91211 0.90943 0.91036 0.90762 0.92329 0.91074 0.90994 0.92152 0.92549 0.81179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.21 11.81 21.66 0.26 -46.96 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 3 Si 1.02 38.21 29.55 68.60 2.03 40.23 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.24 -8.31 7.11 99.48 0.71 -7.60 16 7 C -0.35 -18.51 10.25 84.01 0.86 -17.65 16 8 H 0.14 6.32 7.83 -2.91 -0.02 6.30 16 9 N -0.17 -9.23 3.74 -190.01 -0.71 -9.94 16 10 C -0.08 -3.52 11.49 83.38 0.96 -2.56 16 11 C -0.05 -2.05 6.90 37.73 0.26 -1.79 16 12 N -0.61 -19.14 5.47 -303.93 -1.66 -20.81 16 13 C 0.50 15.20 7.87 87.66 0.69 15.89 16 14 O -0.57 -21.88 12.82 -3.10 -0.04 -21.92 16 15 C 0.11 2.54 6.15 85.63 0.53 3.07 16 16 N -0.72 -16.06 5.42 -466.77 -2.53 -18.59 16 17 C 0.52 11.80 7.15 87.66 0.63 12.42 16 18 O -0.58 -16.65 15.98 -3.04 -0.05 -16.70 16 19 C -0.10 -1.66 2.53 -11.54 -0.03 -1.69 16 20 C -0.11 -1.65 5.10 30.60 0.16 -1.50 16 21 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 22 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 23 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 24 C -0.10 -1.57 4.49 30.59 0.14 -1.43 16 25 C -0.06 -2.97 10.85 85.42 0.93 -2.04 16 26 N -0.31 -18.42 10.40 -56.47 -0.59 -19.01 16 27 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.19 6.54 8.06 -2.91 -0.02 6.52 16 29 H 0.42 9.37 8.83 -92.71 -0.82 8.55 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.41 9.36 6.86 -92.71 -0.64 8.72 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.07 7.57 -2.39 -0.02 1.05 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 43 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 44 H 0.17 8.90 5.92 -2.91 -0.02 8.89 16 Total: -1.00 -75.80 363.54 2.41 -73.38 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -0.42 Total: 40.97 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.13 Total: -0.67 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -5.23 Total: -115.31 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.09 Total: -38.62 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Total: -75.80 2.41 -73.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735037385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds