Wall clock time and date at job start Tue Mar 31 2020 12:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34066 * 126.95223 * 2 1 4 4 N 1.21243 * 113.42041 * 179.44121 * 3 2 1 5 5 C 1.30035 * 112.05539 * 0.72720 * 4 3 2 6 6 C 1.36958 * 126.94757 * 180.02562 * 2 1 3 7 7 C 1.45824 * 138.53204 * 0.02562 * 6 2 1 8 8 C 1.50698 * 120.09934 * 359.97438 * 7 6 2 9 9 N 1.29978 * 119.79077 * 179.70420 * 7 6 2 10 10 N 1.39276 * 123.50773 * 0.25174 * 9 7 6 11 11 C 1.46496 * 118.61900 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46832 * 75.64756 * 11 10 9 13 13 C 1.46902 * 111.00013 * 208.86275 * 12 11 10 14 14 C 1.50697 * 109.47264 * 162.61590 * 13 12 11 15 15 H 1.07997 * 119.99878 * 354.68703 * 14 13 12 16 16 C 1.37877 * 119.99978 * 174.67753 * 14 13 12 17 17 N 1.31512 * 120.00153 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46758 * 90.00298 * 18 16 14 20 20 H 1.48494 * 109.46874 * 210.00430 * 18 16 14 21 21 H 1.48498 * 109.46883 * 330.00425 * 18 16 14 22 22 C 1.46901 * 111.00449 * 84.91021 * 12 11 10 23 23 C 1.52995 * 109.46975 * 69.56610 * 22 12 11 24 24 C 1.52997 * 109.47304 * 189.57272 * 22 12 11 25 25 C 1.34990 * 122.76747 * 0.02562 * 10 9 7 26 26 O 1.21696 * 120.71601 * 180.02562 * 25 10 9 27 27 H 1.09004 * 109.47108 * 269.97772 * 1 2 3 28 28 H 1.09003 * 109.47064 * 29.96856 * 1 2 3 29 29 H 1.08994 * 109.47259 * 149.97241 * 1 2 3 30 30 H 1.09004 * 109.46971 * 179.72021 * 8 7 6 31 31 H 1.08996 * 109.47176 * 299.71777 * 8 7 6 32 32 H 1.08996 * 109.47437 * 59.72617 * 8 7 6 33 33 H 1.09000 * 109.47317 * 195.64183 * 11 10 9 34 34 H 1.08993 * 109.47205 * 315.64746 * 11 10 9 35 35 H 1.08997 * 109.46809 * 282.61898 * 13 12 11 36 36 H 1.08998 * 109.46851 * 42.61755 * 13 12 11 37 37 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46667 * 309.56810 * 22 12 11 39 39 H 1.08998 * 109.46923 * 68.95256 * 23 22 12 40 40 H 1.09009 * 109.47036 * 188.94802 * 23 22 12 41 41 H 1.08997 * 109.47747 * 308.94668 * 23 22 12 42 42 H 1.08996 * 109.47658 * 50.64178 * 24 22 12 43 43 H 1.09002 * 109.46942 * 170.64401 * 24 22 12 44 44 H 1.09004 * 109.47030 * 290.64026 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3130 1.0714 0.0000 4 7 3.4917 0.7877 0.0109 5 6 3.6846 -0.4982 0.0046 6 6 2.3303 -1.0945 -0.0005 7 6 2.2153 -2.5482 -0.0016 8 6 0.8561 -3.1989 -0.0019 9 7 3.2889 -3.2809 -0.0075 10 7 4.5786 -2.7551 -0.0080 11 6 5.7139 -3.6810 -0.0145 12 7 5.8734 -4.2507 -1.3591 13 6 6.4667 -5.5930 -1.2951 14 6 6.2291 -6.3099 -2.5992 15 1 5.6186 -5.8523 -3.3635 16 6 6.7913 -7.5500 -2.8166 17 7 7.5344 -8.1074 -1.8857 18 14 6.4974 -8.4384 -4.4334 19 1 7.5568 -8.0631 -5.4039 20 1 6.5318 -9.9053 -4.2055 21 1 5.1699 -8.0527 -4.9759 22 6 6.6709 -3.3630 -2.2158 23 6 8.1225 -3.3566 -1.7323 24 6 6.6166 -3.8642 -3.6603 25 6 4.8266 -1.4282 -0.0018 26 8 5.9693 -1.0094 -0.0029 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 0.9721 -4.2827 -0.0078 31 1 0.3085 -2.8969 0.8908 32 1 0.3046 -2.8878 -0.8891 33 1 6.6215 -3.1450 0.2630 34 1 5.5326 -4.4831 0.7008 35 1 7.5387 -5.5083 -1.1171 36 1 6.0067 -6.1552 -0.4825 37 1 7.9296 -8.9799 -2.0385 38 1 6.2672 -2.3517 -2.1667 39 1 8.5751 -4.3285 -1.9289 40 1 8.6785 -2.5830 -2.2621 41 1 8.1481 -3.1537 -0.6617 42 1 5.5784 -4.0270 -3.9497 43 1 7.0654 -3.1214 -4.3198 44 1 7.1674 -4.8014 -3.7407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:53 Heat of formation + Delta-G solvation = 91.377685 kcal Electronic energy + Delta-G solvation = -27979.257701 eV Core-core repulsion = 24130.022682 eV Total energy + Delta-G solvation = -3849.235019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.18157 -40.31916 -37.65734 -37.46695 -34.59096 -33.70866 -32.80050 -32.50698 -30.71500 -28.78648 -28.34926 -27.48960 -26.27803 -25.57994 -24.40829 -23.08558 -22.23606 -20.71774 -19.21427 -18.60952 -18.33944 -18.19131 -16.66155 -16.23754 -15.93208 -15.61364 -15.26106 -14.85723 -14.58764 -14.22322 -14.12739 -13.87443 -13.51210 -13.40942 -13.29559 -13.15390 -12.47226 -12.39039 -12.21785 -11.96313 -11.69082 -11.62516 -11.33208 -11.20600 -10.97419 -10.91352 -10.77355 -10.70254 -10.63065 -10.28703 -10.24188 -10.01961 -9.96090 -9.47547 -9.06688 -8.41432 -8.35091 -7.36311 -6.02321 -3.99012 0.54245 0.94663 2.04482 2.07775 2.52227 3.17967 3.18494 3.31324 3.38311 3.42206 3.71114 4.04335 4.28795 4.41490 4.73940 4.86453 4.93421 5.01427 5.04894 5.15030 5.30470 5.31924 5.36098 5.44720 5.46964 5.74145 5.75565 5.86584 5.89736 6.05354 6.06167 6.22554 6.38855 6.56123 6.60119 6.75688 6.96732 7.13209 7.37369 7.45571 7.53268 7.79951 7.85959 7.98717 8.09808 8.19044 8.49419 9.04639 9.60342 11.08122 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018084 B = 0.003732 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.947872 B = 7500.829575 C = 8265.866249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.019 3.981 3 O 0.120 5.880 4 N -0.286 5.286 5 C -0.024 4.024 6 C -0.201 4.201 7 C 0.158 3.842 8 C -0.089 4.089 9 N -0.200 5.200 10 N -0.405 5.405 11 C 0.283 3.717 12 N -0.537 5.537 13 C 0.192 3.808 14 C -0.498 4.498 15 H 0.073 0.927 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.273 1.273 22 C 0.093 3.907 23 C -0.178 4.178 24 C -0.140 4.140 25 C 0.570 3.430 26 O -0.503 6.503 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.013 0.987 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.027 0.973 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.353 13.653 5.255 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 O 0.048 5.952 4 N 0.014 4.986 5 C -0.188 4.188 6 C -0.209 4.209 7 C -0.029 4.029 8 C -0.147 4.147 9 N -0.010 5.010 10 N -0.225 5.225 11 C 0.073 3.927 12 N -0.262 5.262 13 C 0.067 3.933 14 C -0.537 4.537 15 H 0.091 0.909 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.721 3.279 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.016 4.016 23 C -0.237 4.237 24 C -0.197 4.197 25 C 0.356 3.644 26 O -0.375 6.375 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.668 13.785 5.086 20.761 hybrid contribution 0.354 -0.169 -0.558 0.682 sum -14.314 13.616 4.528 20.268 Atomic orbital electron populations 1.20541 0.82312 1.05536 1.04842 1.24333 0.95852 0.84680 0.99858 1.84930 1.10779 1.33371 1.66147 1.73677 0.95259 1.14978 1.14672 1.24370 0.96296 0.90756 1.07366 1.21678 0.91759 0.95969 1.11454 1.22465 0.95478 0.85863 0.99129 1.20634 0.88619 1.02453 1.03040 1.74418 0.88897 1.26628 1.11014 1.49345 1.03887 1.03721 1.65594 1.22228 0.84546 0.91589 0.94323 1.61946 1.51244 1.05037 1.07981 1.19865 0.93647 0.81362 0.98393 1.21322 1.29941 1.01450 1.00971 0.90935 1.24956 0.95579 0.97328 0.96845 1.69948 1.33766 1.16850 1.33354 0.86572 0.78651 0.78829 0.83865 1.20788 1.21356 1.19812 1.21445 0.90806 0.94676 0.94665 1.22409 0.98628 1.02445 1.00217 1.22185 1.02221 1.02112 0.93222 1.17278 0.86759 0.82099 0.78289 1.90889 1.21598 1.76602 1.48390 0.88454 0.89063 0.88118 0.89025 0.89793 0.89706 0.89751 0.88303 0.96889 0.95506 0.92993 0.93056 0.90805 0.93381 0.93554 0.92859 0.95354 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.24 36.01 0.37 0.12 16 2 C 0.02 0.17 7.57 -34.77 -0.26 -0.09 16 3 O 0.12 1.38 11.09 17.02 0.19 1.57 16 4 N -0.29 -4.41 12.05 34.22 0.41 -4.00 16 5 C -0.02 -0.40 7.83 -80.96 -0.63 -1.03 16 6 C -0.20 -2.50 6.49 -103.34 -0.67 -3.17 16 7 C 0.16 1.98 7.10 -80.35 -0.57 1.41 16 8 C -0.09 -0.65 9.31 36.00 0.34 -0.31 16 9 N -0.20 -3.29 11.20 34.78 0.39 -2.90 16 10 N -0.40 -7.45 3.75 -64.38 -0.24 -7.69 16 11 C 0.28 5.51 5.51 -63.32 -0.35 5.17 16 12 N -0.54 -11.67 4.59 -231.98 -1.06 -12.74 16 13 C 0.19 4.75 4.47 -4.98 -0.02 4.73 16 14 C -0.50 -13.25 6.52 -34.44 -0.22 -13.48 16 15 H 0.07 1.93 5.61 -52.49 -0.29 1.64 16 16 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 17 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.09 1.94 2.90 -67.72 -0.20 1.75 16 23 C -0.18 -3.55 8.32 37.16 0.31 -3.24 16 24 C -0.14 -2.93 7.70 37.16 0.29 -2.65 16 25 C 0.57 10.83 7.23 -12.49 -0.09 10.74 16 26 O -0.50 -10.72 15.91 5.19 0.08 -10.64 16 27 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.20 6.66 -51.93 -0.35 -0.15 16 30 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.44 7.42 -51.93 -0.39 0.06 16 33 H 0.08 1.66 4.81 -51.93 -0.25 1.41 16 34 H 0.10 1.85 7.46 -51.93 -0.39 1.46 16 35 H 0.01 0.35 5.70 -51.93 -0.30 0.05 16 36 H 0.03 0.71 7.58 -51.93 -0.39 0.31 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.11 6.98 -51.93 -0.36 0.75 16 39 H 0.07 1.59 6.50 -51.93 -0.34 1.25 16 40 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.05 0.90 6.22 -51.93 -0.32 0.58 16 42 H 0.05 1.14 7.35 -51.93 -0.38 0.76 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 2.22 5.61 -51.93 -0.29 1.93 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -33.46 354.40 -6.71 -40.17 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.72 Total: -1.52 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.82 Total: 1.31 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.23 Total: -52.39 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.27 Total: -9.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.46 -6.71 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.551 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds