Wall clock time and date at job start Tue Mar 31 2020 12:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34066 * 126.95223 * 2 1 4 4 N 1.21243 * 113.42041 * 179.44121 * 3 2 1 5 5 C 1.30035 * 112.05539 * 0.72720 * 4 3 2 6 6 C 1.36958 * 126.94757 * 180.02562 * 2 1 3 7 7 C 1.45824 * 138.53204 * 0.02562 * 6 2 1 8 8 C 1.50698 * 120.09934 * 359.97438 * 7 6 2 9 9 N 1.29978 * 119.79077 * 179.70420 * 7 6 2 10 10 N 1.39276 * 123.50773 * 0.25174 * 9 7 6 11 11 C 1.46496 * 118.61900 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46832 * 75.64756 * 11 10 9 13 13 C 1.46902 * 111.00013 * 208.86275 * 12 11 10 14 14 C 1.50697 * 109.47264 * 162.61590 * 13 12 11 15 15 H 1.07997 * 119.99878 * 354.68703 * 14 13 12 16 16 C 1.37877 * 119.99978 * 174.67753 * 14 13 12 17 17 N 1.31512 * 120.00153 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46758 * 90.00298 * 18 16 14 20 20 H 1.48494 * 109.46874 * 210.00430 * 18 16 14 21 21 H 1.48498 * 109.46883 * 330.00425 * 18 16 14 22 22 C 1.46901 * 111.00449 * 84.91021 * 12 11 10 23 23 C 1.52995 * 109.46975 * 69.56610 * 22 12 11 24 24 C 1.52997 * 109.47304 * 189.57272 * 22 12 11 25 25 C 1.34990 * 122.76747 * 0.02562 * 10 9 7 26 26 O 1.21696 * 120.71601 * 180.02562 * 25 10 9 27 27 H 1.09004 * 109.47108 * 269.97772 * 1 2 3 28 28 H 1.09003 * 109.47064 * 29.96856 * 1 2 3 29 29 H 1.08994 * 109.47259 * 149.97241 * 1 2 3 30 30 H 1.09004 * 109.46971 * 179.72021 * 8 7 6 31 31 H 1.08996 * 109.47176 * 299.71777 * 8 7 6 32 32 H 1.08996 * 109.47437 * 59.72617 * 8 7 6 33 33 H 1.09000 * 109.47317 * 195.64183 * 11 10 9 34 34 H 1.08993 * 109.47205 * 315.64746 * 11 10 9 35 35 H 1.08997 * 109.46809 * 282.61898 * 13 12 11 36 36 H 1.08998 * 109.46851 * 42.61755 * 13 12 11 37 37 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46667 * 309.56810 * 22 12 11 39 39 H 1.08998 * 109.46923 * 68.95256 * 23 22 12 40 40 H 1.09009 * 109.47036 * 188.94802 * 23 22 12 41 41 H 1.08997 * 109.47747 * 308.94668 * 23 22 12 42 42 H 1.08996 * 109.47658 * 50.64178 * 24 22 12 43 43 H 1.09002 * 109.46942 * 170.64401 * 24 22 12 44 44 H 1.09004 * 109.47030 * 290.64026 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3130 1.0714 0.0000 4 7 3.4917 0.7877 0.0109 5 6 3.6846 -0.4982 0.0046 6 6 2.3303 -1.0945 -0.0005 7 6 2.2153 -2.5482 -0.0016 8 6 0.8561 -3.1989 -0.0019 9 7 3.2889 -3.2809 -0.0075 10 7 4.5786 -2.7551 -0.0080 11 6 5.7139 -3.6810 -0.0145 12 7 5.8734 -4.2507 -1.3591 13 6 6.4667 -5.5930 -1.2951 14 6 6.2291 -6.3099 -2.5992 15 1 5.6186 -5.8523 -3.3635 16 6 6.7913 -7.5500 -2.8166 17 7 7.5344 -8.1074 -1.8857 18 14 6.4974 -8.4384 -4.4334 19 1 7.5568 -8.0631 -5.4039 20 1 6.5318 -9.9053 -4.2055 21 1 5.1699 -8.0527 -4.9759 22 6 6.6709 -3.3630 -2.2158 23 6 8.1225 -3.3566 -1.7323 24 6 6.6166 -3.8642 -3.6603 25 6 4.8266 -1.4282 -0.0018 26 8 5.9693 -1.0094 -0.0029 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 0.9721 -4.2827 -0.0078 31 1 0.3085 -2.8969 0.8908 32 1 0.3046 -2.8878 -0.8891 33 1 6.6215 -3.1450 0.2630 34 1 5.5326 -4.4831 0.7008 35 1 7.5387 -5.5083 -1.1171 36 1 6.0067 -6.1552 -0.4825 37 1 7.9296 -8.9799 -2.0385 38 1 6.2672 -2.3517 -2.1667 39 1 8.5751 -4.3285 -1.9289 40 1 8.6785 -2.5830 -2.2621 41 1 8.1481 -3.1537 -0.6617 42 1 5.5784 -4.0270 -3.9497 43 1 7.0654 -3.1214 -4.3198 44 1 7.1674 -4.8014 -3.7407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:53 Heat of formation + Delta-G solvation = 67.318275 kcal Electronic energy + Delta-G solvation = -27980.300996 eV Core-core repulsion = 24130.022682 eV Total energy + Delta-G solvation = -3850.278314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.24430 -41.66495 -39.33766 -38.68456 -35.76295 -34.71019 -34.59477 -33.74770 -32.30887 -30.14054 -29.04767 -28.97587 -27.94120 -27.05044 -25.45186 -24.53858 -24.06369 -21.85440 -20.63614 -20.03527 -19.38702 -19.24965 -18.57037 -17.60295 -17.46247 -16.92090 -16.58047 -16.47385 -16.33221 -15.59621 -15.06577 -14.92845 -14.88144 -14.34046 -14.13393 -14.04618 -13.86157 -13.79283 -13.35927 -13.25911 -13.12332 -13.04111 -12.84682 -12.65852 -12.61750 -12.49920 -12.46115 -12.14507 -12.04294 -12.01479 -11.77531 -11.43220 -11.22879 -11.04674 -10.97220 -10.49966 -9.58101 -9.14772 -8.12072 -6.15013 -0.37219 -0.20518 0.80380 1.01782 1.43881 1.44636 1.55400 1.74151 1.97476 2.07676 2.44658 2.70534 3.08366 3.17930 3.20433 3.50880 3.81417 3.93262 4.03408 4.07908 4.17837 4.22822 4.30057 4.38462 4.59779 4.72562 4.73618 4.81745 4.83095 4.84883 4.90148 4.93983 5.01358 5.06537 5.14836 5.21781 5.23163 5.44814 5.45589 5.63043 5.74959 6.07425 6.24916 6.26895 6.54063 6.81399 6.92518 6.96203 7.48053 8.98492 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018084 B = 0.003732 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.947872 B = 7500.829575 C = 8265.866249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 O 0.137 5.863 4 N -0.313 5.313 5 C -0.064 4.064 6 C -0.225 4.225 7 C 0.191 3.809 8 C -0.091 4.091 9 N -0.260 5.260 10 N -0.409 5.409 11 C 0.291 3.709 12 N -0.539 5.539 13 C 0.208 3.792 14 C -0.501 4.501 15 H 0.071 0.929 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.095 3.905 23 C -0.167 4.167 24 C -0.130 4.130 25 C 0.559 3.441 26 O -0.549 6.549 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.098 0.902 35 H -0.006 1.006 36 H 0.005 0.995 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.638 14.904 4.469 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 O 0.062 5.938 4 N -0.011 5.011 5 C -0.226 4.226 6 C -0.234 4.234 7 C 0.004 3.996 8 C -0.149 4.149 9 N -0.069 5.069 10 N -0.228 5.228 11 C 0.080 3.920 12 N -0.264 5.264 13 C 0.083 3.917 14 C -0.539 4.539 15 H 0.089 0.911 16 C -0.192 4.192 17 N -0.575 5.575 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.014 4.014 23 C -0.226 4.226 24 C -0.188 4.188 25 C 0.347 3.653 26 O -0.425 6.425 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.012 0.988 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.981 15.041 4.303 24.597 hybrid contribution 1.378 -0.355 -0.243 1.443 sum -17.603 14.686 4.060 23.282 Atomic orbital electron populations 1.21090 0.77143 1.07940 1.07421 1.25472 0.97675 0.82371 0.94204 1.84915 1.10005 1.34069 1.64817 1.73677 0.97084 1.14790 1.15555 1.24202 0.97187 0.91433 1.09759 1.21810 0.90478 0.96673 1.14443 1.23470 0.96350 0.86137 0.93636 1.21004 0.85793 1.01673 1.06442 1.74527 0.88503 1.27384 1.16486 1.49060 1.04837 1.03153 1.65718 1.21983 0.85345 0.91560 0.93062 1.61894 1.51074 1.04047 1.09425 1.19520 0.92351 0.82793 0.97085 1.21529 1.29462 1.01638 1.01303 0.91079 1.25720 0.95369 0.98122 1.00026 1.70071 1.34907 1.17264 1.35305 0.85567 0.78797 0.77488 0.79927 1.20211 1.21143 1.19048 1.21425 0.91154 0.94062 0.94746 1.22274 0.98102 1.01848 1.00381 1.22034 1.01479 1.01691 0.93556 1.17694 0.87174 0.82687 0.77752 1.90829 1.23290 1.77335 1.51018 0.85285 0.86639 0.85685 0.89923 0.85713 0.86356 0.90652 0.88428 0.98781 0.97651 0.92981 0.93614 0.92711 0.91535 0.93739 0.93611 0.92854 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.03 10.24 71.24 0.73 0.76 16 2 C 0.07 0.95 7.57 25.39 0.19 1.14 16 3 O 0.14 2.80 11.09 70.99 0.79 3.59 16 4 N -0.31 -9.55 12.05 -46.39 -0.56 -10.11 16 5 C -0.06 -2.14 7.83 44.37 0.35 -1.79 16 6 C -0.23 -5.12 6.49 -19.03 -0.12 -5.25 16 7 C 0.19 4.39 7.10 44.80 0.32 4.71 16 8 C -0.09 -0.93 9.31 71.24 0.66 -0.27 16 9 N -0.26 -8.67 11.20 -43.89 -0.49 -9.16 16 10 N -0.41 -15.88 3.75 -475.68 -1.78 -17.67 16 11 C 0.29 12.17 5.51 170.81 0.94 13.11 16 12 N -0.54 -24.64 4.59 -887.84 -4.08 -28.72 16 13 C 0.21 10.85 4.47 85.56 0.38 11.23 16 14 C -0.50 -27.35 6.52 25.60 0.17 -27.19 16 15 H 0.07 3.85 5.61 -2.91 -0.02 3.83 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 18 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.09 4.12 2.90 44.91 0.13 4.25 16 23 C -0.17 -6.97 8.32 71.98 0.60 -6.37 16 24 C -0.13 -5.52 7.70 71.98 0.55 -4.97 16 25 C 0.56 22.48 7.23 86.59 0.63 23.11 16 26 O -0.55 -25.12 15.91 -4.34 -0.07 -25.19 16 27 H 0.13 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.12 -0.49 6.66 -2.39 -0.02 -0.50 16 30 H 0.08 1.09 8.11 -2.38 -0.02 1.07 16 31 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.52 7.42 -2.39 -0.02 0.50 16 33 H 0.08 3.23 4.81 -2.39 -0.01 3.22 16 34 H 0.10 3.98 7.46 -2.39 -0.02 3.96 16 35 H -0.01 -0.31 5.70 -2.39 -0.01 -0.32 16 36 H 0.01 0.30 7.58 -2.39 -0.02 0.29 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.05 2.06 6.98 -2.38 -0.02 2.05 16 39 H 0.05 2.47 6.50 -2.39 -0.02 2.46 16 40 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.04 1.84 6.22 -2.39 -0.01 1.82 16 42 H 0.04 1.97 7.35 -2.39 -0.02 1.95 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 3.47 5.61 -2.38 -0.01 3.46 16 Total: -1.00 -79.66 354.40 3.15 -76.51 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.04 Total: 6.41 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.99 Total: 13.24 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -6.62 Total: -120.38 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.72 Total: -21.60 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -79.66 3.15 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.826 kcal (2) G-P(sol) polarization free energy of solvation -79.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds