Wall clock time and date at job start Tue Mar 31 2020 12:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86810 * 119.99566 * 2 1 4 4 H 1.48504 * 109.47109 * 240.00519 * 3 2 1 5 5 H 1.48503 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47134 * 120.00061 * 3 2 1 7 7 C 1.39000 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.37298 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.36439 * 126.05426 * 180.02562 * 9 7 2 11 11 C 1.35784 * 107.49983 * 179.97438 * 10 9 7 12 12 N 1.40286 * 126.10383 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00359 * 179.97438 * 12 11 10 14 14 O 1.21410 * 119.99561 * 0.02562 * 13 12 11 15 15 C 1.49303 * 120.00326 * 180.02562 * 13 12 11 16 16 O 1.21373 * 119.99822 * 0.02562 * 15 13 12 17 17 N 1.34777 * 120.00119 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99965 * 180.02562 * 17 15 13 19 19 C 1.54065 * 108.87405 * 277.96907 * 18 17 15 20 20 C 1.54066 * 112.81762 * 197.50625 * 19 18 17 21 21 C 1.50470 * 112.49875 * 318.28617 * 20 19 18 22 22 C 1.54246 * 108.51998 * 94.14981 * 21 20 19 23 23 C 1.45537 * 112.40731 * 280.01038 * 22 21 20 24 24 C 1.50473 * 108.87630 * 154.99590 * 18 17 15 25 25 C 1.40727 * 107.79645 * 0.23688 * 11 10 9 26 26 N 1.30880 * 108.37729 * 359.59622 * 25 11 10 27 27 H 0.96999 * 120.00690 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.25522 * 0.03635 * 10 9 7 29 29 H 0.96998 * 120.00134 * 0.02562 * 12 11 10 30 30 H 0.96996 * 120.00099 * 359.97438 * 17 15 13 31 31 H 1.08996 * 108.77304 * 36.48071 * 18 17 15 32 32 H 1.09005 * 108.81720 * 318.37164 * 19 18 17 33 33 H 1.09004 * 108.81387 * 76.75411 * 19 18 17 34 34 H 1.08997 * 108.87949 * 197.51000 * 20 19 18 35 35 H 1.09001 * 108.87760 * 79.06417 * 20 19 18 36 36 H 1.09003 * 109.63195 * 334.43897 * 21 20 19 37 37 H 1.09001 * 109.62960 * 213.85940 * 21 20 19 38 38 H 1.09001 * 108.89247 * 40.76541 * 22 21 20 39 39 H 1.09004 * 108.89281 * 159.35535 * 22 21 20 40 40 H 1.09000 * 108.89458 * 182.68905 * 23 22 21 41 41 H 1.08998 * 108.89747 * 301.18352 * 23 22 21 42 42 H 1.09006 * 109.62936 * 95.21532 * 24 18 17 43 43 H 1.08998 * 109.78811 * 334.73047 * 24 18 17 44 44 H 1.07997 * 125.81020 * 179.71751 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2467 1.6179 0.0000 4 1 3.1004 1.6967 -1.2126 5 1 1.2816 2.7465 0.0006 6 1 3.1005 1.6966 1.2124 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3215 -2.3928 -0.0005 10 6 1.8754 -3.6397 -0.0005 11 6 0.8577 -4.5386 0.0000 12 7 0.9884 -5.9353 -0.0003 13 6 -0.1109 -6.7151 0.0009 14 8 -1.2144 -6.2087 0.0018 15 6 0.0282 -8.2017 0.0012 16 8 1.1313 -8.7079 0.0008 17 7 -1.0711 -8.9814 0.0018 18 6 -0.9346 -10.4400 0.0026 19 6 -0.6871 -10.9183 -1.4409 20 6 -0.9534 -12.4245 -1.6252 21 6 -0.4271 -13.2466 -0.4801 22 6 -1.5688 -13.4607 0.5347 23 6 -1.7691 -12.3052 1.3965 24 6 -2.1738 -11.0447 0.6050 25 6 -0.3517 -3.8190 -0.0051 26 7 -0.0712 -2.5406 0.0001 27 1 -0.4851 0.8400 0.0004 28 1 2.9306 -3.8699 0.0000 29 1 1.8699 -6.3399 -0.0006 30 1 -1.9527 -8.5768 0.0025 31 1 -0.0756 -10.7116 0.6162 32 1 -1.3402 -10.3610 -2.1127 33 1 0.3494 -10.7109 -1.7071 34 1 -0.4756 -12.7569 -2.5467 35 1 -2.0282 -12.5849 -1.7097 36 1 0.3965 -12.7191 0.0013 37 1 -0.0808 -14.2114 -0.8507 38 1 -2.4921 -13.6595 -0.0095 39 1 -1.3321 -14.3252 1.1551 40 1 -2.5524 -12.5351 2.1188 41 1 -0.8435 -12.1018 1.9350 42 1 -2.8704 -11.3180 -0.1876 43 1 -2.6459 -10.3270 1.2759 44 1 -1.3426 -4.2485 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746343884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:41 Heat of formation + Delta-G solvation = 0.268526 kcal Electronic energy + Delta-G solvation = -26321.437057 eV Core-core repulsion = 22468.251248 eV Total energy + Delta-G solvation = -3853.185809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66998 -39.76409 -38.89619 -37.72860 -35.13547 -34.15467 -33.15847 -32.65023 -30.79426 -30.31192 -28.05037 -25.75135 -25.25715 -24.69753 -23.21255 -21.18415 -21.01348 -20.15986 -19.71835 -19.44643 -18.08087 -17.43709 -16.75983 -15.93382 -15.74924 -15.49765 -15.20103 -15.07855 -14.76135 -14.36000 -14.12819 -13.99686 -13.72426 -13.49830 -13.35702 -13.04272 -12.98024 -12.50753 -12.31878 -11.79626 -11.73144 -11.54346 -11.34095 -11.27060 -11.19694 -11.03743 -10.86025 -10.70143 -10.69360 -10.58212 -10.56733 -10.28354 -9.24350 -9.21692 -9.09768 -8.87436 -8.12932 -6.77772 -6.60285 -4.27741 1.67276 2.61863 2.94478 3.03581 3.07294 3.33711 3.72057 3.75641 3.96620 4.23537 4.36395 4.38867 4.58754 4.65012 4.75857 4.80000 4.91436 4.98185 4.99533 5.06526 5.09545 5.17914 5.44553 5.50727 5.64040 5.67012 5.77108 5.84355 5.87499 5.95758 5.98427 6.06541 6.14058 6.20149 6.30430 6.36164 6.76166 6.88595 6.92745 7.16363 7.25391 7.77174 7.87553 8.11542 8.18598 8.49292 8.69785 9.31212 9.59862 10.35443 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046326 B = 0.002108 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.267894 B =13281.176747 C =13520.240191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.078 4.078 11 C -0.069 4.069 12 N -0.584 5.584 13 C 0.482 3.518 14 O -0.524 6.524 15 C 0.515 3.485 16 O -0.529 6.529 17 N -0.704 5.704 18 C 0.147 3.853 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.027 4.027 26 N -0.261 5.261 27 H 0.276 0.724 28 H 0.149 0.851 29 H 0.409 0.591 30 H 0.412 0.588 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -22.259 -0.101 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.175 4.175 12 N -0.226 5.226 13 C 0.263 3.737 14 O -0.401 6.401 15 C 0.297 3.703 16 O -0.405 6.405 17 N -0.357 5.357 18 C 0.043 3.957 19 C -0.169 4.169 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.166 4.166 25 C -0.203 4.203 26 N -0.091 5.091 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.244 0.756 30 H 0.249 0.751 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.796 -20.909 -0.094 21.095 hybrid contribution 0.869 -0.164 -0.054 0.886 sum -1.927 -21.073 -0.148 21.161 Atomic orbital electron populations 1.70194 1.06167 1.28254 1.34795 1.25666 0.95734 1.00358 0.95388 0.85871 0.79148 0.79460 0.79547 1.19089 1.20100 1.19096 1.19875 0.91745 0.80480 1.53322 0.86484 1.44557 1.04097 1.03355 1.38490 1.21304 0.96979 0.85213 1.19425 1.17255 0.94616 0.80657 1.24978 1.42153 1.08636 1.04582 1.67246 1.19704 0.85292 0.86988 0.81695 1.90653 1.25442 1.74339 1.49695 1.20309 0.84877 0.88260 0.76900 1.90723 1.25592 1.75717 1.48438 1.46038 1.09575 1.06563 1.73520 1.20944 0.99461 0.78217 0.97077 1.22333 1.02833 0.95797 0.95965 1.21286 1.01290 0.94039 0.98543 1.21402 0.98337 0.99894 0.96393 1.20522 0.98885 0.98161 0.98113 1.20419 1.02018 0.94600 0.98287 1.21684 0.96998 0.97714 1.00220 1.24147 0.97948 0.90762 1.07411 1.78262 0.90087 1.14974 1.25810 0.91297 0.83355 0.75615 0.75115 0.89381 0.91638 0.91315 0.92056 0.91956 0.91316 0.91870 0.92051 0.92231 0.91747 0.91781 0.90658 0.90584 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.21 11.81 55.50 0.66 -20.55 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 9 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 10 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 11 C -0.07 -1.61 6.90 -83.93 -0.58 -2.19 16 12 N -0.58 -11.11 5.45 -10.46 -0.06 -11.17 16 13 C 0.48 8.78 7.85 -11.65 -0.09 8.69 16 14 O -0.52 -10.62 13.62 5.44 0.07 -10.54 16 15 C 0.52 7.82 7.80 -11.65 -0.09 7.73 16 16 O -0.53 -8.71 16.14 5.48 0.09 -8.62 16 17 N -0.70 -8.34 4.94 -54.97 -0.27 -8.61 16 18 C 0.15 1.42 1.94 -68.64 -0.13 1.28 16 19 C -0.13 -1.21 5.37 -25.62 -0.14 -1.35 16 20 C -0.11 -0.81 5.31 -27.44 -0.15 -0.96 16 21 C -0.12 -0.82 5.61 -27.34 -0.15 -0.98 16 22 C -0.12 -0.71 5.26 -29.60 -0.16 -0.87 16 23 C -0.12 -0.75 5.26 -29.60 -0.16 -0.91 16 24 C -0.13 -0.94 5.17 -27.34 -0.14 -1.08 16 25 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 26 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 27 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 29 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 30 H 0.41 4.52 7.95 -40.82 -0.32 4.19 16 31 H 0.09 0.97 6.08 -51.93 -0.32 0.65 16 32 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 6.63 -51.93 -0.34 0.06 16 36 H 0.07 0.53 6.98 -51.93 -0.36 0.17 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.34 7.47 -51.93 -0.39 -0.04 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.46 7.47 -51.93 -0.39 0.07 16 42 H 0.07 0.50 6.98 -51.93 -0.36 0.13 16 43 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 44 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -31.99 356.17 -7.34 -39.33 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.05 Total: 13.14 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.40 Total: -1.04 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.60 Total: -51.32 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.16 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.99 -7.34 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746343884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.602 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds