Wall clock time and date at job start Tue Mar 31 2020 12:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86810 * 119.99566 * 2 1 4 4 H 1.48504 * 109.47109 * 240.00519 * 3 2 1 5 5 H 1.48503 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47134 * 120.00061 * 3 2 1 7 7 C 1.39000 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.37298 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.36439 * 126.05426 * 180.02562 * 9 7 2 11 11 C 1.35784 * 107.49983 * 179.97438 * 10 9 7 12 12 N 1.40286 * 126.10383 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00359 * 179.97438 * 12 11 10 14 14 O 1.21410 * 119.99561 * 0.02562 * 13 12 11 15 15 C 1.49303 * 120.00326 * 180.02562 * 13 12 11 16 16 O 1.21373 * 119.99822 * 0.02562 * 15 13 12 17 17 N 1.34777 * 120.00119 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99965 * 180.02562 * 17 15 13 19 19 C 1.54065 * 108.87405 * 277.96907 * 18 17 15 20 20 C 1.54066 * 112.81762 * 197.50625 * 19 18 17 21 21 C 1.50470 * 112.49875 * 318.28617 * 20 19 18 22 22 C 1.54246 * 108.51998 * 94.14981 * 21 20 19 23 23 C 1.45537 * 112.40731 * 280.01038 * 22 21 20 24 24 C 1.50473 * 108.87630 * 154.99590 * 18 17 15 25 25 C 1.40727 * 107.79645 * 0.23688 * 11 10 9 26 26 N 1.30880 * 108.37729 * 359.59622 * 25 11 10 27 27 H 0.96999 * 120.00690 * 359.97438 * 1 2 3 28 28 H 1.08000 * 126.25522 * 0.03635 * 10 9 7 29 29 H 0.96998 * 120.00134 * 0.02562 * 12 11 10 30 30 H 0.96996 * 120.00099 * 359.97438 * 17 15 13 31 31 H 1.08996 * 108.77304 * 36.48071 * 18 17 15 32 32 H 1.09005 * 108.81720 * 318.37164 * 19 18 17 33 33 H 1.09004 * 108.81387 * 76.75411 * 19 18 17 34 34 H 1.08997 * 108.87949 * 197.51000 * 20 19 18 35 35 H 1.09001 * 108.87760 * 79.06417 * 20 19 18 36 36 H 1.09003 * 109.63195 * 334.43897 * 21 20 19 37 37 H 1.09001 * 109.62960 * 213.85940 * 21 20 19 38 38 H 1.09001 * 108.89247 * 40.76541 * 22 21 20 39 39 H 1.09004 * 108.89281 * 159.35535 * 22 21 20 40 40 H 1.09000 * 108.89458 * 182.68905 * 23 22 21 41 41 H 1.08998 * 108.89747 * 301.18352 * 23 22 21 42 42 H 1.09006 * 109.62936 * 95.21532 * 24 18 17 43 43 H 1.08998 * 109.78811 * 334.73047 * 24 18 17 44 44 H 1.07997 * 125.81020 * 179.71751 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2467 1.6179 0.0000 4 1 3.1004 1.6967 -1.2126 5 1 1.2816 2.7465 0.0006 6 1 3.1005 1.6966 1.2124 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3215 -2.3928 -0.0005 10 6 1.8754 -3.6397 -0.0005 11 6 0.8577 -4.5386 0.0000 12 7 0.9884 -5.9353 -0.0003 13 6 -0.1109 -6.7151 0.0009 14 8 -1.2144 -6.2087 0.0018 15 6 0.0282 -8.2017 0.0012 16 8 1.1313 -8.7079 0.0008 17 7 -1.0711 -8.9814 0.0018 18 6 -0.9346 -10.4400 0.0026 19 6 -0.6871 -10.9183 -1.4409 20 6 -0.9534 -12.4245 -1.6252 21 6 -0.4271 -13.2466 -0.4801 22 6 -1.5688 -13.4607 0.5347 23 6 -1.7691 -12.3052 1.3965 24 6 -2.1738 -11.0447 0.6050 25 6 -0.3517 -3.8190 -0.0051 26 7 -0.0712 -2.5406 0.0001 27 1 -0.4851 0.8400 0.0004 28 1 2.9306 -3.8699 0.0000 29 1 1.8699 -6.3399 -0.0006 30 1 -1.9527 -8.5768 0.0025 31 1 -0.0756 -10.7116 0.6162 32 1 -1.3402 -10.3610 -2.1127 33 1 0.3494 -10.7109 -1.7071 34 1 -0.4756 -12.7569 -2.5467 35 1 -2.0282 -12.5849 -1.7097 36 1 0.3965 -12.7191 0.0013 37 1 -0.0808 -14.2114 -0.8507 38 1 -2.4921 -13.6595 -0.0095 39 1 -1.3321 -14.3252 1.1551 40 1 -2.5524 -12.5351 2.1188 41 1 -0.8435 -12.1018 1.9350 42 1 -2.8704 -11.3180 -0.1876 43 1 -2.6459 -10.3270 1.2759 44 1 -1.3426 -4.2485 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746343884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:40 Heat of formation + Delta-G solvation = -21.472652 kcal Electronic energy + Delta-G solvation = -26322.379825 eV Core-core repulsion = 22468.251248 eV Total energy + Delta-G solvation = -3854.128577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08138 -41.33071 -40.05458 -39.00460 -36.39893 -35.61778 -34.92346 -33.24447 -32.30789 -31.62378 -29.88049 -27.31917 -26.13018 -25.83115 -24.34087 -22.91026 -21.98721 -21.47399 -21.12394 -20.47267 -19.53428 -19.10652 -17.84081 -17.45339 -16.98265 -16.94157 -16.76987 -16.15686 -15.79714 -15.46405 -15.42498 -15.22678 -14.88524 -14.75436 -14.67308 -14.51644 -13.92682 -13.51321 -13.39037 -13.19620 -12.98314 -12.96901 -12.88825 -12.64104 -12.22300 -12.13427 -12.06002 -11.96969 -11.55339 -11.34952 -11.23981 -11.14844 -11.06041 -10.88154 -10.55817 -10.23556 -10.14763 -8.63266 -8.49159 -6.27158 0.28091 1.30165 1.30830 1.42102 1.57066 1.72615 2.03688 2.12124 2.52654 2.57903 2.93007 3.07193 3.50697 3.61371 3.78720 4.02595 4.13758 4.16063 4.30921 4.38794 4.39914 4.48183 4.51455 4.53906 4.82291 4.89462 4.94567 4.97145 4.99372 5.09520 5.18403 5.20952 5.27920 5.29751 5.32225 5.33689 5.38046 5.42266 5.50317 5.58251 5.89792 6.02285 6.24838 6.48654 6.66856 6.81472 7.06514 7.40450 7.61938 8.49822 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046326 B = 0.002108 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.267894 B =13281.176747 C =13520.240191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.006 4.006 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.076 4.076 11 C -0.057 4.057 12 N -0.583 5.583 13 C 0.485 3.515 14 O -0.543 6.543 15 C 0.524 3.476 16 O -0.541 6.541 17 N -0.687 5.687 18 C 0.147 3.853 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.049 4.049 26 N -0.307 5.307 27 H 0.278 0.722 28 H 0.188 0.812 29 H 0.423 0.577 30 H 0.418 0.582 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -23.846 -0.096 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.227 4.227 11 C -0.163 4.163 12 N -0.228 5.228 13 C 0.267 3.733 14 O -0.422 6.422 15 C 0.304 3.696 16 O -0.419 6.419 17 N -0.340 5.340 18 C 0.044 3.956 19 C -0.166 4.166 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.162 4.162 25 C -0.224 4.224 26 N -0.139 5.139 27 H 0.088 0.912 28 H 0.205 0.795 29 H 0.260 0.740 30 H 0.256 0.744 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.022 -22.564 -0.089 22.654 hybrid contribution 0.580 0.117 -0.058 0.595 sum -1.442 -22.447 -0.147 22.493 Atomic orbital electron populations 1.70367 1.08376 1.29361 1.36726 1.26895 0.96515 1.04335 0.94026 0.84639 0.77566 0.73655 0.80277 1.17748 1.20188 1.17754 1.20621 0.93052 0.80799 1.53986 0.84098 1.44840 1.03743 1.04736 1.39756 1.22000 0.98835 0.84205 1.17626 1.17297 0.93475 0.82547 1.22987 1.42097 1.09830 1.02969 1.67858 1.20342 0.84616 0.88437 0.79950 1.90643 1.26303 1.75214 1.49992 1.19697 0.85562 0.86718 0.77632 1.90729 1.26151 1.75334 1.49640 1.46113 1.08885 1.07464 1.71519 1.21162 1.00425 0.76476 0.97517 1.22300 1.01454 0.97546 0.95338 1.21267 1.02205 0.92273 0.98924 1.21409 0.98238 1.00071 0.96373 1.20514 0.98911 0.98109 0.97987 1.20415 1.01962 0.94311 0.98427 1.21688 0.95887 0.98007 1.00651 1.24253 0.98930 0.90783 1.08439 1.78158 0.91825 1.16438 1.27492 0.91208 0.79523 0.73966 0.74414 0.90541 0.91749 0.93426 0.91703 0.90634 0.92743 0.90918 0.91066 0.91480 0.90558 0.92732 0.89308 0.90403 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.79 11.81 21.66 0.26 -46.53 16 2 C -0.01 -0.28 5.50 84.96 0.47 0.18 16 3 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 4 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.35 -18.59 10.25 84.02 0.86 -17.73 16 8 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 9 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 10 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 11 C -0.06 -2.64 6.90 37.83 0.26 -2.38 16 12 N -0.58 -21.83 5.45 -305.33 -1.66 -23.49 16 13 C 0.48 17.45 7.85 87.22 0.69 18.14 16 14 O -0.54 -22.11 13.62 -3.43 -0.05 -22.16 16 15 C 0.52 15.49 7.80 87.22 0.68 16.17 16 16 O -0.54 -17.36 16.14 -3.32 -0.05 -17.42 16 17 N -0.69 -15.55 4.94 -446.19 -2.21 -17.76 16 18 C 0.15 2.65 1.94 44.53 0.09 2.74 16 19 C -0.13 -2.21 5.37 31.31 0.17 -2.04 16 20 C -0.11 -1.34 5.31 30.14 0.16 -1.18 16 21 C -0.12 -1.42 5.61 30.20 0.17 -1.25 16 22 C -0.12 -1.11 5.26 28.74 0.15 -0.96 16 23 C -0.11 -1.23 5.26 28.74 0.15 -1.08 16 24 C -0.12 -1.56 5.17 30.20 0.16 -1.41 16 25 C -0.05 -2.61 10.85 85.44 0.93 -1.68 16 26 N -0.31 -18.32 10.39 -56.43 -0.59 -18.91 16 27 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 29 H 0.42 13.40 8.29 -92.71 -0.77 12.63 16 30 H 0.42 8.66 7.95 -92.71 -0.74 7.92 16 31 H 0.08 1.61 6.08 -2.39 -0.01 1.60 16 32 H 0.06 1.13 8.12 -2.38 -0.02 1.11 16 33 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.76 6.63 -2.39 -0.02 0.74 16 36 H 0.05 0.79 6.98 -2.39 -0.02 0.77 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.56 7.47 -2.39 -0.02 0.55 16 39 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.71 7.47 -2.39 -0.02 0.69 16 42 H 0.09 0.91 6.98 -2.38 -0.02 0.89 16 43 H 0.08 0.98 7.86 -2.39 -0.02 0.96 16 44 H 0.18 9.17 5.92 -2.91 -0.02 9.16 16 Total: -1.00 -71.38 356.17 2.45 -68.93 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.45 Total: 41.96 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.88 Total: 4.91 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -4.91 Total: -116.41 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.10 Total: -39.57 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -71.38 2.45 -68.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746343884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.457 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds