Wall clock time and date at job start Tue Mar 31 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 300.00145 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99950 * 3 2 1 7 7 C 1.39009 * 120.00568 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.37295 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.36441 * 126.05724 * 180.02562 * 9 7 2 11 11 C 1.35793 * 107.49780 * 179.97438 * 10 9 7 12 12 N 1.40292 * 126.09880 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00077 * 179.97438 * 12 11 10 14 14 O 1.21400 * 119.99599 * 0.02562 * 13 12 11 15 15 C 1.49307 * 119.99817 * 179.97438 * 13 12 11 16 16 O 1.21371 * 120.00002 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99817 * 179.97438 * 15 13 12 18 18 C 1.46966 * 120.36534 * 359.72643 * 17 15 13 19 19 C 1.52829 * 108.83838 * 68.61746 * 18 17 15 20 20 C 1.53801 * 109.25566 * 72.60463 * 19 18 17 21 21 C 1.52448 * 109.40169 * 282.12609 * 20 19 18 22 22 C 1.53954 * 110.73178 * 113.72344 * 21 20 19 23 23 C 1.52879 * 109.73252 * 315.63196 * 22 21 20 24 24 C 1.45332 * 120.36354 * 179.97438 * 17 15 13 25 25 C 1.40717 * 107.79929 * 359.97438 * 11 10 9 26 26 N 1.30877 * 108.37727 * 359.74352 * 25 11 10 27 27 H 0.96991 * 120.00547 * 0.02562 * 1 2 3 28 28 H 1.07997 * 126.24963 * 359.95042 * 10 9 7 29 29 H 0.97003 * 119.99771 * 359.97438 * 12 11 10 30 30 H 1.08993 * 109.52994 * 188.27131 * 18 17 15 31 31 H 1.09007 * 109.52865 * 308.49067 * 18 17 15 32 32 H 1.08997 * 109.51374 * 312.64899 * 19 18 17 33 33 H 1.09007 * 109.44541 * 192.51699 * 19 18 17 34 34 H 1.08996 * 109.48738 * 162.14702 * 20 19 18 35 35 H 1.09006 * 109.49251 * 42.10354 * 20 19 18 36 36 H 1.09005 * 109.22147 * 353.40219 * 21 20 19 37 37 H 1.08995 * 109.19156 * 234.02662 * 21 20 19 38 38 H 1.08998 * 109.42847 * 195.55638 * 22 21 20 39 39 H 1.08998 * 109.42937 * 75.71561 * 22 21 20 40 40 H 1.09001 * 109.48603 * 167.12723 * 23 22 21 41 41 H 1.08998 * 109.48163 * 47.08158 * 23 22 21 42 42 H 1.08995 * 109.67982 * 343.05344 * 24 17 15 43 43 H 1.09000 * 109.67477 * 103.55745 * 24 17 15 44 44 H 1.08009 * 125.81060 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3465 -0.0006 5 1 1.8879 2.3965 -1.2126 6 1 1.8880 2.3965 1.2125 7 6 2.0080 -1.2038 0.0005 8 1 3.0880 -1.2037 0.0001 9 7 1.3216 -2.3928 0.0005 10 6 1.8754 -3.6398 0.0015 11 6 0.8575 -4.5386 0.0017 12 7 0.9881 -5.9354 0.0032 13 6 -0.1112 -6.7151 0.0037 14 8 -1.2145 -6.2086 0.0025 15 6 0.0280 -8.2017 0.0046 16 8 1.1311 -8.7079 0.0045 17 7 -1.0714 -8.9814 0.0057 18 6 -2.4109 -8.3769 0.0120 19 6 -2.6482 -7.6889 -1.3319 20 6 -2.8642 -8.7569 -2.4173 21 6 -1.5181 -9.3467 -2.8225 22 6 -1.4269 -10.8281 -2.4137 23 6 -1.9587 -11.0048 -0.9913 24 6 -0.9451 -10.4292 0.0061 25 6 -0.3518 -3.8190 0.0014 26 7 -0.0712 -2.5407 0.0066 27 1 -0.4850 0.8399 -0.0004 28 1 2.9305 -3.8699 0.0017 29 1 1.8698 -6.3400 0.0037 30 1 -3.1607 -9.1540 0.1597 31 1 -2.4774 -7.6468 0.8187 32 1 -1.7809 -7.0801 -1.5874 33 1 -3.5322 -7.0547 -1.2639 34 1 -3.3379 -8.3011 -3.2867 35 1 -3.5048 -9.5478 -2.0270 36 1 -0.7199 -8.7892 -2.3323 37 1 -1.4017 -9.2647 -3.9031 38 1 -0.3870 -11.1522 -2.4547 39 1 -2.0210 -11.4310 -3.1004 40 1 -2.1075 -12.0652 -0.7878 41 1 -2.9078 -10.4784 -0.8901 42 1 0.0645 -10.7097 -0.2937 43 1 -1.1522 -10.8154 1.0041 44 1 -1.3428 -4.2485 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746362905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:38 Heat of formation + Delta-G solvation = 32.197873 kcal Electronic energy + Delta-G solvation = -27777.961201 eV Core-core repulsion = 23926.159952 eV Total energy + Delta-G solvation = -3851.801248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05009 -39.69893 -38.30205 -37.66132 -34.78437 -33.94773 -33.25300 -33.01157 -30.32413 -28.79725 -27.96864 -26.70830 -25.40563 -24.30390 -22.45445 -22.14920 -21.01970 -20.04602 -19.48634 -18.97781 -17.70769 -17.25398 -16.96963 -16.08164 -15.58014 -15.47058 -15.12292 -15.07676 -14.55608 -14.21144 -14.04111 -13.81799 -13.74420 -13.21449 -13.18622 -12.98658 -12.72491 -12.25180 -12.15179 -11.79079 -11.73000 -11.45536 -11.32482 -11.17655 -11.04210 -11.02287 -10.76212 -10.69558 -10.59024 -10.53228 -10.38796 -9.93752 -9.21048 -8.96978 -8.85386 -8.61421 -8.12917 -6.76391 -6.60903 -4.27829 1.68768 2.59702 2.92160 3.03714 3.09382 3.33199 3.69462 3.71946 3.87089 4.37483 4.47369 4.60758 4.71676 4.75935 4.90640 4.97772 4.98506 5.01792 5.12131 5.30834 5.42977 5.48722 5.56525 5.62091 5.68444 5.71736 5.82589 6.05229 6.10382 6.13584 6.19594 6.21677 6.31418 6.36342 6.36866 6.63816 6.78111 6.88841 6.96266 7.16054 7.18347 7.74087 7.84898 8.13052 8.18914 8.50493 8.70347 9.31172 9.60023 10.34946 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.002859 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.904932 B = 9789.664091 C =10170.865640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.078 4.078 11 C -0.067 4.067 12 N -0.585 5.585 13 C 0.479 3.521 14 O -0.510 6.510 15 C 0.513 3.487 16 O -0.534 6.534 17 N -0.581 5.581 18 C 0.116 3.884 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.147 4.147 24 C 0.109 3.891 25 C -0.026 4.026 26 N -0.261 5.261 27 H 0.275 0.725 28 H 0.148 0.852 29 H 0.408 0.592 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -17.783 -2.064 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.094 4.906 10 C -0.230 4.230 11 C -0.173 4.173 12 N -0.227 5.227 13 C 0.261 3.739 14 O -0.388 6.388 15 C 0.296 3.704 16 O -0.411 6.411 17 N -0.314 5.314 18 C -0.006 4.006 19 C -0.171 4.171 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.185 4.185 24 C -0.014 4.014 25 C -0.202 4.202 26 N -0.092 5.092 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.243 0.757 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.737 -16.352 -2.059 17.149 hybrid contribution 1.248 -0.426 -0.034 1.319 sum -3.489 -16.778 -2.093 17.265 Atomic orbital electron populations 1.70209 1.06153 1.28003 1.35029 1.25658 0.95725 1.00333 0.95390 0.85750 0.79681 0.80139 0.78510 1.18634 1.19871 1.19867 1.19965 0.91773 0.80472 1.53180 0.86438 1.44560 1.04091 1.03349 1.38579 1.21311 0.96988 0.85249 1.19404 1.17250 0.94603 0.80638 1.24849 1.42172 1.08610 1.04559 1.67386 1.19604 0.85227 0.87143 0.81941 1.90647 1.24812 1.74448 1.48861 1.20270 0.84384 0.88356 0.77362 1.90715 1.25396 1.75628 1.49332 1.47665 1.06742 1.06205 1.70824 1.21944 0.81834 0.97139 0.99696 1.22354 1.04080 0.97204 0.93458 1.21898 0.97011 0.98545 0.99084 1.21733 0.98204 0.95657 1.00378 1.21724 1.01019 0.96736 0.95843 1.22307 0.99917 1.01095 0.95138 1.21544 1.01469 0.79298 0.99071 1.24139 0.97900 0.90720 1.07449 1.78256 0.90103 1.15036 1.25760 0.91433 0.83446 0.75744 0.90603 0.89052 0.89391 0.90819 0.92352 0.91618 0.92035 0.92673 0.92008 0.92211 0.90959 0.89698 0.89073 0.91686 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.03 11.81 55.50 0.66 -20.37 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.65 29.55 -169.99 -5.02 13.63 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -3.75 3.73 -11.40 -0.04 -3.80 16 10 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 11 C -0.07 -1.54 6.90 -83.92 -0.58 -2.12 16 12 N -0.58 -10.96 5.45 -10.46 -0.06 -11.02 16 13 C 0.48 8.47 7.05 -11.65 -0.08 8.39 16 14 O -0.51 -9.47 8.27 5.45 0.05 -9.43 16 15 C 0.51 7.92 6.30 -11.65 -0.07 7.85 16 16 O -0.53 -9.04 15.91 5.48 0.09 -8.95 16 17 N -0.58 -7.15 1.67 -174.65 -0.29 -7.45 16 18 C 0.12 1.31 4.91 -3.88 -0.02 1.29 16 19 C -0.13 -1.63 4.51 -26.40 -0.12 -1.75 16 20 C -0.13 -1.31 5.49 -26.60 -0.15 -1.45 16 21 C -0.12 -1.32 5.40 -26.52 -0.14 -1.46 16 22 C -0.12 -1.02 5.75 -26.30 -0.15 -1.17 16 23 C -0.15 -1.16 5.45 -26.58 -0.14 -1.30 16 24 C 0.11 1.08 6.01 -4.46 -0.03 1.05 16 25 C -0.03 -0.67 10.84 -17.02 -0.18 -0.85 16 26 N -0.26 -7.38 10.39 30.81 0.32 -7.06 16 27 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 29 H 0.41 6.75 8.29 -40.82 -0.34 6.41 16 30 H 0.08 0.66 6.07 -51.93 -0.32 0.34 16 31 H 0.09 1.18 6.70 -51.92 -0.35 0.84 16 32 H 0.09 1.36 4.80 -51.93 -0.25 1.11 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 5.48 -51.93 -0.28 0.28 16 36 H 0.06 0.82 5.38 -51.93 -0.28 0.54 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.57 7.87 -51.93 -0.41 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.65 3.35 -51.93 -0.17 0.48 16 42 H 0.09 1.01 6.79 -51.93 -0.35 0.66 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.18 4.28 5.92 -52.48 -0.31 3.97 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -30.91 337.65 -6.89 -37.80 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.57 Total: 12.55 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.11 Total: -0.99 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.58 Total: -49.70 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.13 Total: -18.38 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.91 -6.89 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746362905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.996 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds