Wall clock time and date at job start Tue Mar 31 2020 12:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 300.00145 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99950 * 3 2 1 7 7 C 1.39009 * 120.00568 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.37295 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.36441 * 126.05724 * 180.02562 * 9 7 2 11 11 C 1.35793 * 107.49780 * 179.97438 * 10 9 7 12 12 N 1.40292 * 126.09880 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00077 * 179.97438 * 12 11 10 14 14 O 1.21400 * 119.99599 * 0.02562 * 13 12 11 15 15 C 1.49307 * 119.99817 * 179.97438 * 13 12 11 16 16 O 1.21371 * 120.00002 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99817 * 179.97438 * 15 13 12 18 18 C 1.46966 * 120.36534 * 359.72643 * 17 15 13 19 19 C 1.52829 * 108.83838 * 68.61746 * 18 17 15 20 20 C 1.53801 * 109.25566 * 72.60463 * 19 18 17 21 21 C 1.52448 * 109.40169 * 282.12609 * 20 19 18 22 22 C 1.53954 * 110.73178 * 113.72344 * 21 20 19 23 23 C 1.52879 * 109.73252 * 315.63196 * 22 21 20 24 24 C 1.45332 * 120.36354 * 179.97438 * 17 15 13 25 25 C 1.40717 * 107.79929 * 359.97438 * 11 10 9 26 26 N 1.30877 * 108.37727 * 359.74352 * 25 11 10 27 27 H 0.96991 * 120.00547 * 0.02562 * 1 2 3 28 28 H 1.07997 * 126.24963 * 359.95042 * 10 9 7 29 29 H 0.97003 * 119.99771 * 359.97438 * 12 11 10 30 30 H 1.08993 * 109.52994 * 188.27131 * 18 17 15 31 31 H 1.09007 * 109.52865 * 308.49067 * 18 17 15 32 32 H 1.08997 * 109.51374 * 312.64899 * 19 18 17 33 33 H 1.09007 * 109.44541 * 192.51699 * 19 18 17 34 34 H 1.08996 * 109.48738 * 162.14702 * 20 19 18 35 35 H 1.09006 * 109.49251 * 42.10354 * 20 19 18 36 36 H 1.09005 * 109.22147 * 353.40219 * 21 20 19 37 37 H 1.08995 * 109.19156 * 234.02662 * 21 20 19 38 38 H 1.08998 * 109.42847 * 195.55638 * 22 21 20 39 39 H 1.08998 * 109.42937 * 75.71561 * 22 21 20 40 40 H 1.09001 * 109.48603 * 167.12723 * 23 22 21 41 41 H 1.08998 * 109.48163 * 47.08158 * 23 22 21 42 42 H 1.08995 * 109.67982 * 343.05344 * 24 17 15 43 43 H 1.09000 * 109.67477 * 103.55745 * 24 17 15 44 44 H 1.08009 * 125.81060 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3465 -0.0006 5 1 1.8879 2.3965 -1.2126 6 1 1.8880 2.3965 1.2125 7 6 2.0080 -1.2038 0.0005 8 1 3.0880 -1.2037 0.0001 9 7 1.3216 -2.3928 0.0005 10 6 1.8754 -3.6398 0.0015 11 6 0.8575 -4.5386 0.0017 12 7 0.9881 -5.9354 0.0032 13 6 -0.1112 -6.7151 0.0037 14 8 -1.2145 -6.2086 0.0025 15 6 0.0280 -8.2017 0.0046 16 8 1.1311 -8.7079 0.0045 17 7 -1.0714 -8.9814 0.0057 18 6 -2.4109 -8.3769 0.0120 19 6 -2.6482 -7.6889 -1.3319 20 6 -2.8642 -8.7569 -2.4173 21 6 -1.5181 -9.3467 -2.8225 22 6 -1.4269 -10.8281 -2.4137 23 6 -1.9587 -11.0048 -0.9913 24 6 -0.9451 -10.4292 0.0061 25 6 -0.3518 -3.8190 0.0014 26 7 -0.0712 -2.5407 0.0066 27 1 -0.4850 0.8399 -0.0004 28 1 2.9305 -3.8699 0.0017 29 1 1.8698 -6.3400 0.0037 30 1 -3.1607 -9.1540 0.1597 31 1 -2.4774 -7.6468 0.8187 32 1 -1.7809 -7.0801 -1.5874 33 1 -3.5322 -7.0547 -1.2639 34 1 -3.3379 -8.3011 -3.2867 35 1 -3.5048 -9.5478 -2.0270 36 1 -0.7199 -8.7892 -2.3323 37 1 -1.4017 -9.2647 -3.9031 38 1 -0.3870 -11.1522 -2.4547 39 1 -2.0210 -11.4310 -3.1004 40 1 -2.1075 -12.0652 -0.7878 41 1 -2.9078 -10.4784 -0.8901 42 1 0.0645 -10.7097 -0.2937 43 1 -1.1522 -10.8154 1.0041 44 1 -1.3428 -4.2485 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746362905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:37 Heat of formation + Delta-G solvation = 12.803495 kcal Electronic energy + Delta-G solvation = -27778.802204 eV Core-core repulsion = 23926.159952 eV Total energy + Delta-G solvation = -3852.642252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.33728 -41.43483 -39.66962 -38.84816 -36.20873 -35.28237 -34.80909 -33.99769 -32.28353 -30.03637 -29.50658 -27.65722 -27.03733 -25.69904 -23.63062 -23.03761 -22.83863 -21.42385 -21.06837 -20.05977 -19.36910 -18.65723 -18.08699 -17.44761 -17.13758 -16.78273 -16.65714 -16.30071 -15.74963 -15.48960 -15.36545 -15.19657 -14.95925 -14.77686 -14.54983 -14.17381 -13.83962 -13.51960 -13.38503 -13.15857 -13.05472 -12.93826 -12.79009 -12.64204 -12.18349 -12.03670 -11.98823 -11.94734 -11.67694 -11.49778 -11.40472 -11.13653 -10.89625 -10.86151 -10.33690 -10.13046 -9.63820 -8.58634 -8.48880 -6.25922 0.33142 1.28485 1.33912 1.42479 1.59429 1.72170 2.06611 2.11050 2.48972 2.56085 2.86330 3.07490 3.45438 3.75684 3.94829 4.00704 4.10508 4.17439 4.27136 4.39746 4.47301 4.53193 4.57497 4.70096 4.71859 4.81759 4.84429 4.97162 4.98709 4.99064 5.05695 5.16425 5.24402 5.27001 5.30297 5.34712 5.37691 5.46362 5.49271 5.66946 5.91815 6.02069 6.23520 6.44448 6.68134 6.80735 7.11732 7.41648 7.64188 8.50492 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.002859 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.904932 B = 9789.664091 C =10170.865640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.243 1.243 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.140 0.860 9 N -0.164 5.164 10 C -0.079 4.079 11 C -0.053 4.053 12 N -0.589 5.589 13 C 0.479 3.521 14 O -0.517 6.517 15 C 0.516 3.484 16 O -0.551 6.551 17 N -0.566 5.566 18 C 0.115 3.885 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.139 4.139 24 C 0.102 3.898 25 C -0.045 4.045 26 N -0.307 5.307 27 H 0.278 0.722 28 H 0.184 0.816 29 H 0.419 0.581 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -20.002 -2.025 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.216 4.216 3 Si 0.838 3.162 4 H -0.166 1.166 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.157 0.843 9 N 0.068 4.932 10 C -0.230 4.230 11 C -0.159 4.159 12 N -0.234 5.234 13 C 0.262 3.738 14 O -0.394 6.394 15 C 0.298 3.702 16 O -0.430 6.430 17 N -0.298 5.298 18 C -0.006 4.006 19 C -0.170 4.170 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.151 4.151 23 C -0.176 4.176 24 C -0.020 4.020 25 C -0.220 4.220 26 N -0.139 5.139 27 H 0.087 0.913 28 H 0.201 0.799 29 H 0.256 0.744 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.608 -18.637 -2.021 19.304 hybrid contribution 1.117 0.048 -0.074 1.121 sum -3.491 -18.588 -2.095 19.029 Atomic orbital electron populations 1.70372 1.08321 1.29156 1.36938 1.26855 0.96508 1.04207 0.94073 0.84539 0.78989 0.74428 0.78272 1.16560 1.19692 1.19664 1.20662 0.92974 0.80854 1.53961 0.84311 1.44822 1.03774 1.04645 1.39994 1.21974 0.98770 0.84356 1.17852 1.17286 0.93496 0.82470 1.22642 1.42128 1.09737 1.02981 1.68518 1.20206 0.84690 0.88477 0.80469 1.90648 1.25272 1.75181 1.48332 1.19755 0.85134 0.87112 0.78152 1.90708 1.26090 1.75381 1.50845 1.47766 1.06132 1.07276 1.68657 1.22022 0.82124 0.98014 0.98472 1.22251 1.02301 0.97623 0.94807 1.21851 0.97106 0.98444 0.98347 1.21737 0.97433 0.97022 1.00012 1.21727 1.01182 0.95126 0.97080 1.22294 0.99031 1.02768 0.93477 1.21849 1.01782 0.77237 1.01083 1.24257 0.98877 0.90617 1.08292 1.78146 0.91744 1.16582 1.27421 0.91265 0.79911 0.74409 0.86661 0.90821 0.93121 0.91011 0.92387 0.88974 0.95061 0.92921 0.92706 0.90308 0.88030 0.88990 0.90300 0.89482 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.66 11.81 21.66 0.26 -46.40 16 2 C 0.00 -0.22 5.50 84.96 0.47 0.24 16 3 Si 1.02 38.37 29.55 68.60 2.03 40.40 16 4 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.35 -18.69 10.25 84.02 0.86 -17.83 16 8 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 9 N -0.16 -9.10 3.73 -189.97 -0.71 -9.81 16 10 C -0.08 -3.71 11.50 83.41 0.96 -2.75 16 11 C -0.05 -2.44 6.90 37.82 0.26 -2.18 16 12 N -0.59 -22.30 5.45 -305.33 -1.66 -23.97 16 13 C 0.48 17.21 7.05 87.22 0.61 17.82 16 14 O -0.52 -19.77 8.27 -3.40 -0.03 -19.80 16 15 C 0.52 15.76 6.30 87.22 0.55 16.31 16 16 O -0.55 -18.42 15.91 -3.31 -0.05 -18.47 16 17 N -0.57 -13.08 1.67 -824.82 -1.38 -14.46 16 18 C 0.11 2.41 4.91 86.23 0.42 2.84 16 19 C -0.13 -3.16 4.51 30.81 0.14 -3.02 16 20 C -0.12 -2.22 5.49 30.68 0.17 -2.06 16 21 C -0.12 -2.52 5.40 30.73 0.17 -2.36 16 22 C -0.11 -1.68 5.75 30.88 0.18 -1.50 16 23 C -0.14 -1.60 5.45 30.69 0.17 -1.43 16 24 C 0.10 1.72 6.01 86.74 0.52 2.24 16 25 C -0.04 -2.37 10.84 85.44 0.93 -1.44 16 26 N -0.31 -18.17 10.39 -56.43 -0.59 -18.76 16 27 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.18 7.02 8.06 -2.91 -0.02 7.00 16 29 H 0.42 13.82 8.29 -92.71 -0.77 13.05 16 30 H 0.12 1.56 6.07 -2.39 -0.01 1.54 16 31 H 0.07 1.86 6.70 -2.38 -0.02 1.84 16 32 H 0.05 1.61 4.80 -2.39 -0.01 1.60 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.23 5.48 -2.38 -0.01 1.22 16 36 H 0.03 0.82 5.38 -2.38 -0.01 0.81 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 0.90 7.87 -2.39 -0.02 0.88 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.96 3.35 -2.39 -0.01 0.95 16 42 H 0.08 1.59 6.79 -2.39 -0.02 1.58 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.18 9.05 5.92 -2.91 -0.02 9.04 16 Total: -1.00 -71.04 337.65 4.56 -66.48 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 0.29 Total: 39.88 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.40 Total: 4.89 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.08 Total: -113.39 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.08 Total: -38.27 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -71.04 4.56 -66.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746362905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.288 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds