Wall clock time and date at job start Tue Mar 31 2020 12:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.01576 * 2 1 4 4 N 1.46501 * 109.47457 * 58.60871 * 3 2 1 5 5 C 1.34769 * 120.00313 * 179.97438 * 4 3 2 6 6 O 1.21366 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.49311 * 120.00061 * 180.02562 * 5 4 3 8 8 O 1.21397 * 119.99795 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99820 * 180.02562 * 7 5 4 10 10 C 1.40291 * 119.99916 * 179.97438 * 9 7 5 11 11 C 1.40728 * 126.10043 * 359.97438 * 10 9 7 12 12 N 1.30869 * 108.37411 * 179.77351 * 11 10 9 13 13 N 1.40064 * 108.43837 * 0.38012 * 12 11 10 14 14 C 1.37301 * 126.05474 * 179.87893 * 13 12 11 15 15 H 1.08002 * 119.99622 * 179.68469 * 14 13 12 16 16 C 1.39003 * 119.99972 * 359.96620 * 14 13 12 17 17 N 1.31284 * 120.00043 * 359.72316 * 16 14 13 18 18 Si 1.86801 * 119.99884 * 179.72361 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99789 * 18 16 14 20 20 H 1.48499 * 109.47039 * 209.99949 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99749 * 18 16 14 22 22 C 1.35786 * 126.10040 * 179.97438 * 10 9 7 23 23 C 1.54263 * 110.07350 * 121.41737 * 2 1 3 24 24 C 1.54893 * 104.19328 * 95.69546 * 23 2 1 25 25 C 1.54885 * 102.74870 * 37.94415 * 24 23 2 26 26 C 1.53873 * 110.03015 * 238.60970 * 2 1 3 27 27 H 1.08998 * 109.47660 * 60.69691 * 1 2 3 28 28 H 1.09004 * 109.47137 * 180.70922 * 1 2 3 29 29 H 1.09004 * 109.47122 * 300.69861 * 1 2 3 30 30 H 1.09003 * 109.47174 * 298.60658 * 3 2 1 31 31 H 1.08998 * 109.47227 * 178.61414 * 3 2 1 32 32 H 0.97001 * 119.99297 * 0.02562 * 4 3 2 33 33 H 0.97005 * 120.00098 * 0.02562 * 9 7 5 34 34 H 1.07994 * 125.80713 * 0.02562 * 11 10 9 35 35 H 0.97004 * 119.99619 * 180.02562 * 17 16 14 36 36 H 1.08006 * 126.25004 * 0.02562 * 22 10 9 37 37 H 1.08994 * 110.48690 * 214.37177 * 23 2 1 38 38 H 1.08997 * 110.48966 * 337.01920 * 23 2 1 39 39 H 1.08999 * 110.75819 * 279.62363 * 24 23 2 40 40 H 1.09004 * 110.75282 * 156.25555 * 24 23 2 41 41 H 1.09002 * 110.48095 * 203.37932 * 25 24 23 42 42 H 1.08991 * 110.60416 * 80.78942 * 25 24 23 43 43 H 1.09007 * 110.03292 * 359.94977 * 26 2 1 44 44 H 1.09000 * 110.03545 * 121.32870 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5449 2.1427 1.1790 5 6 1.8783 3.4314 1.3895 6 8 2.5998 4.0080 0.6021 7 6 1.3602 4.1499 2.5915 8 8 0.6382 3.5733 3.3789 9 7 1.6932 5.4389 2.8017 10 6 1.2060 6.1141 3.9307 11 6 0.3651 5.5737 4.9213 12 7 0.1299 6.5014 5.8138 13 7 0.8003 7.6687 5.4268 14 6 0.7978 8.8639 6.1025 15 1 1.3560 9.7038 5.7161 16 6 0.0815 8.9911 7.2869 17 7 -0.5970 7.9701 7.7567 18 14 0.0843 10.6150 8.2103 19 1 -1.0393 11.4591 7.7305 20 1 -0.0754 10.3580 9.6641 21 1 1.3697 11.3187 7.9703 22 6 1.4615 7.4057 4.2627 23 6 2.0595 -0.7553 1.2365 24 6 2.3298 -2.1897 0.7184 25 6 2.8885 -1.9396 -0.7044 26 6 2.0571 -0.7530 -1.2341 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8837 30 1 1.7158 1.9474 -0.9022 31 1 3.1434 1.4273 0.0249 32 1 0.9686 1.6817 1.8086 33 1 2.2693 5.8999 2.1719 34 1 -0.0172 4.5639 4.9435 35 1 -1.0972 8.0591 8.5831 36 1 2.0754 8.0987 3.7063 37 1 2.9820 -0.2994 1.5959 38 1 1.3076 -0.7701 2.0254 39 1 1.4053 -2.7654 0.6748 40 1 3.0700 -2.6923 1.3411 41 1 2.7414 -2.8187 -1.3319 42 1 3.9450 -1.6757 -0.6607 43 1 1.2228 -1.1192 -1.8325 44 1 2.6852 -0.0940 -1.8335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746396283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:11 Heat of formation + Delta-G solvation = -2.427879 kcal Electronic energy + Delta-G solvation = -26211.071848 eV Core-core repulsion = 22357.769114 eV Total energy + Delta-G solvation = -3853.302734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61051 -39.77234 -39.06653 -37.80181 -35.07855 -34.12223 -33.15764 -31.42346 -30.32317 -29.11174 -28.16254 -27.30879 -25.50287 -24.68928 -23.15842 -21.23424 -20.97256 -20.16210 -19.51200 -19.18336 -18.07611 -17.43920 -16.50221 -15.91791 -15.81475 -15.51921 -15.34431 -15.02665 -14.75798 -14.36206 -14.10884 -13.94803 -13.59128 -13.46764 -13.27196 -12.98677 -12.96465 -12.69923 -12.06282 -11.74039 -11.57190 -11.47330 -11.38045 -11.29334 -11.26394 -11.13055 -10.89151 -10.88432 -10.83621 -10.82924 -10.55801 -10.28873 -9.25914 -9.22502 -9.11878 -8.87528 -8.12969 -6.77761 -6.60539 -4.27762 1.67485 2.62841 2.93312 3.03763 3.08602 3.33851 3.72254 3.75836 3.97518 4.15738 4.21865 4.31947 4.37417 4.62126 4.84494 4.91098 4.97936 4.98162 5.02869 5.03516 5.16027 5.33421 5.40135 5.46405 5.52732 5.55396 5.62084 5.71665 5.75877 5.84719 5.96386 6.00338 6.06370 6.20001 6.22472 6.36163 6.75965 6.88811 6.92388 7.16310 7.23893 7.76844 7.86802 8.11214 8.18565 8.49160 8.69730 9.31246 9.59880 10.35269 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.002132 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.287626 B =13129.467138 C =13520.306329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C 0.130 3.870 4 N -0.702 5.702 5 C 0.514 3.486 6 O -0.530 6.530 7 C 0.483 3.517 8 O -0.524 6.524 9 N -0.583 5.583 10 C -0.069 4.069 11 C -0.027 4.027 12 N -0.260 5.260 13 N -0.139 5.139 14 C -0.321 4.321 15 H 0.118 0.882 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 0.936 3.064 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.077 4.077 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.112 4.112 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -15.553 -14.694 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C 0.007 3.993 4 N -0.356 5.356 5 C 0.295 3.705 6 O -0.406 6.406 7 C 0.264 3.736 8 O -0.401 6.401 9 N -0.226 5.226 10 C -0.175 4.175 11 C -0.203 4.203 12 N -0.091 5.091 13 N 0.095 4.905 14 C -0.454 4.454 15 H 0.136 0.864 16 C -0.172 4.172 17 N -0.394 5.394 18 Si 0.760 3.240 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.229 4.229 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.933 -15.325 -13.418 20.745 hybrid contribution 0.504 0.577 -0.497 0.913 sum 4.437 -14.748 -13.914 20.756 Atomic orbital electron populations 1.21952 0.93560 1.02109 1.02357 1.21473 0.96374 0.93633 0.96377 1.21600 0.99010 0.90819 0.87865 1.45755 1.51475 1.11454 1.26940 1.20288 0.81091 0.82720 0.86418 1.90729 1.36359 1.66823 1.46710 1.19669 0.83989 0.83090 0.86843 1.90648 1.36911 1.66453 1.46117 1.42150 1.46816 1.10093 1.23550 1.17258 1.12718 0.93180 0.94351 1.24145 1.01964 1.00561 0.93585 1.78257 1.19213 0.90481 1.21172 1.44566 1.25676 1.08366 1.11928 1.19922 1.32733 0.87004 1.05724 0.86439 1.25670 0.95145 0.99394 0.96962 1.70211 1.21667 1.29241 1.18277 0.85801 0.79453 0.80125 0.78636 1.19531 1.20049 1.18741 1.21308 1.09890 0.96251 0.95432 1.22547 1.01421 0.95240 0.96588 1.22477 1.00825 0.96691 0.96125 1.22357 0.99586 0.97847 0.96454 1.22198 0.99745 0.96778 0.96333 0.92277 0.92083 0.92199 0.91084 0.90991 0.74994 0.75597 0.80562 0.91362 0.83347 0.91083 0.91093 0.91476 0.91562 0.91727 0.91574 0.91192 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 7.97 37.16 0.30 -0.75 16 2 C -0.08 -0.58 0.66 -153.39 -0.10 -0.68 16 3 C 0.13 1.25 4.21 -4.04 -0.02 1.23 16 4 N -0.70 -8.36 5.05 -60.78 -0.31 -8.66 16 5 C 0.51 7.85 7.88 -11.65 -0.09 7.76 16 6 O -0.53 -8.87 16.47 5.48 0.09 -8.77 16 7 C 0.48 8.81 7.85 -11.65 -0.09 8.71 16 8 O -0.52 -10.59 13.62 5.46 0.07 -10.52 16 9 N -0.58 -11.11 5.45 -10.45 -0.06 -11.17 16 10 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 11 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 12 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 13 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 14 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 15 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 16 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 17 N -0.77 -21.19 11.81 55.50 0.66 -20.53 16 18 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 C -0.08 -1.83 11.50 -16.38 -0.19 -2.01 16 23 C -0.12 -0.90 5.37 -25.07 -0.13 -1.04 16 24 C -0.12 -0.79 6.91 -24.74 -0.17 -0.96 16 25 C -0.12 -0.75 6.83 -25.07 -0.17 -0.92 16 26 C -0.11 -0.71 6.11 -25.61 -0.16 -0.87 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 6.81 -51.93 -0.35 0.13 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.41 4.66 6.43 -40.82 -0.26 4.40 16 33 H 0.41 6.74 8.29 -40.82 -0.34 6.40 16 34 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 35 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 36 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 37 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 38 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.41 7.67 -51.93 -0.40 0.01 16 44 H 0.07 0.42 7.67 -51.93 -0.40 0.03 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -32.02 363.94 -6.87 -38.89 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.22 Total: 12.66 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.84 Total: -0.08 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.57 Total: -51.35 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.16 Total: -19.29 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.02 -6.87 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746396283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.460 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds