Wall clock time and date at job start Tue Mar 31 2020 12:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.01576 * 2 1 4 4 N 1.46501 * 109.47457 * 58.60871 * 3 2 1 5 5 C 1.34769 * 120.00313 * 179.97438 * 4 3 2 6 6 O 1.21366 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.49311 * 120.00061 * 180.02562 * 5 4 3 8 8 O 1.21397 * 119.99795 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99820 * 180.02562 * 7 5 4 10 10 C 1.40291 * 119.99916 * 179.97438 * 9 7 5 11 11 C 1.40728 * 126.10043 * 359.97438 * 10 9 7 12 12 N 1.30869 * 108.37411 * 179.77351 * 11 10 9 13 13 N 1.40064 * 108.43837 * 0.38012 * 12 11 10 14 14 C 1.37301 * 126.05474 * 179.87893 * 13 12 11 15 15 H 1.08002 * 119.99622 * 179.68469 * 14 13 12 16 16 C 1.39003 * 119.99972 * 359.96620 * 14 13 12 17 17 N 1.31284 * 120.00043 * 359.72316 * 16 14 13 18 18 Si 1.86801 * 119.99884 * 179.72361 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99789 * 18 16 14 20 20 H 1.48499 * 109.47039 * 209.99949 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99749 * 18 16 14 22 22 C 1.35786 * 126.10040 * 179.97438 * 10 9 7 23 23 C 1.54263 * 110.07350 * 121.41737 * 2 1 3 24 24 C 1.54893 * 104.19328 * 95.69546 * 23 2 1 25 25 C 1.54885 * 102.74870 * 37.94415 * 24 23 2 26 26 C 1.53873 * 110.03015 * 238.60970 * 2 1 3 27 27 H 1.08998 * 109.47660 * 60.69691 * 1 2 3 28 28 H 1.09004 * 109.47137 * 180.70922 * 1 2 3 29 29 H 1.09004 * 109.47122 * 300.69861 * 1 2 3 30 30 H 1.09003 * 109.47174 * 298.60658 * 3 2 1 31 31 H 1.08998 * 109.47227 * 178.61414 * 3 2 1 32 32 H 0.97001 * 119.99297 * 0.02562 * 4 3 2 33 33 H 0.97005 * 120.00098 * 0.02562 * 9 7 5 34 34 H 1.07994 * 125.80713 * 0.02562 * 11 10 9 35 35 H 0.97004 * 119.99619 * 180.02562 * 17 16 14 36 36 H 1.08006 * 126.25004 * 0.02562 * 22 10 9 37 37 H 1.08994 * 110.48690 * 214.37177 * 23 2 1 38 38 H 1.08997 * 110.48966 * 337.01920 * 23 2 1 39 39 H 1.08999 * 110.75819 * 279.62363 * 24 23 2 40 40 H 1.09004 * 110.75282 * 156.25555 * 24 23 2 41 41 H 1.09002 * 110.48095 * 203.37932 * 25 24 23 42 42 H 1.08991 * 110.60416 * 80.78942 * 25 24 23 43 43 H 1.09007 * 110.03292 * 359.94977 * 26 2 1 44 44 H 1.09000 * 110.03545 * 121.32870 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5449 2.1427 1.1790 5 6 1.8783 3.4314 1.3895 6 8 2.5998 4.0080 0.6021 7 6 1.3602 4.1499 2.5915 8 8 0.6382 3.5733 3.3789 9 7 1.6932 5.4389 2.8017 10 6 1.2060 6.1141 3.9307 11 6 0.3651 5.5737 4.9213 12 7 0.1299 6.5014 5.8138 13 7 0.8003 7.6687 5.4268 14 6 0.7978 8.8639 6.1025 15 1 1.3560 9.7038 5.7161 16 6 0.0815 8.9911 7.2869 17 7 -0.5970 7.9701 7.7567 18 14 0.0843 10.6150 8.2103 19 1 -1.0393 11.4591 7.7305 20 1 -0.0754 10.3580 9.6641 21 1 1.3697 11.3187 7.9703 22 6 1.4615 7.4057 4.2627 23 6 2.0595 -0.7553 1.2365 24 6 2.3298 -2.1897 0.7184 25 6 2.8885 -1.9396 -0.7044 26 6 2.0571 -0.7530 -1.2341 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8837 30 1 1.7158 1.9474 -0.9022 31 1 3.1434 1.4273 0.0249 32 1 0.9686 1.6817 1.8086 33 1 2.2693 5.8999 2.1719 34 1 -0.0172 4.5639 4.9435 35 1 -1.0972 8.0591 8.5831 36 1 2.0754 8.0987 3.7063 37 1 2.9820 -0.2994 1.5959 38 1 1.3076 -0.7701 2.0254 39 1 1.4053 -2.7654 0.6748 40 1 3.0700 -2.6923 1.3411 41 1 2.7414 -2.8187 -1.3319 42 1 3.9450 -1.6757 -0.6607 43 1 1.2228 -1.1192 -1.8325 44 1 2.6852 -0.0940 -1.8335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746396283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:10 Heat of formation + Delta-G solvation = -23.875618 kcal Electronic energy + Delta-G solvation = -26212.001892 eV Core-core repulsion = 22357.769114 eV Total energy + Delta-G solvation = -3854.232777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05563 -41.27702 -40.12553 -39.17511 -36.38926 -35.57155 -34.90660 -32.30940 -32.13708 -29.92962 -29.64743 -28.28751 -27.05792 -25.83586 -24.34465 -22.90038 -21.99498 -21.40030 -21.12058 -20.17853 -19.37024 -19.03252 -17.69680 -17.45680 -17.06069 -16.89507 -16.72319 -16.00190 -15.89843 -15.67463 -15.48916 -15.08682 -14.90787 -14.82461 -14.52372 -14.27911 -13.90363 -13.51678 -13.38847 -13.29530 -12.96692 -12.90980 -12.75732 -12.49827 -12.08822 -11.97815 -11.97348 -11.92448 -11.70367 -11.52979 -11.47741 -11.32940 -11.07137 -10.87768 -10.57932 -10.29332 -10.14518 -8.62764 -8.49145 -6.26859 0.28267 1.29306 1.31162 1.42350 1.58661 1.72394 2.03962 2.11983 2.53130 2.58928 2.94074 3.07407 3.50943 3.54832 3.63275 3.73346 4.24377 4.31993 4.39319 4.39819 4.47238 4.51953 4.61298 4.68523 4.77200 4.82168 4.95367 4.96747 4.97912 5.00330 5.09190 5.13376 5.17688 5.21323 5.25223 5.27931 5.30274 5.42730 5.48139 5.52382 5.89894 6.00154 6.24459 6.47632 6.66897 6.79528 7.06699 7.40927 7.62402 8.50064 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.002132 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.287626 B =13129.467138 C =13520.306329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C 0.128 3.872 4 N -0.685 5.685 5 C 0.523 3.477 6 O -0.542 6.542 7 C 0.485 3.515 8 O -0.543 6.543 9 N -0.582 5.582 10 C -0.057 4.057 11 C -0.049 4.049 12 N -0.308 5.308 13 N -0.163 5.163 14 C -0.353 4.353 15 H 0.142 0.858 16 C -0.006 4.006 17 N -0.821 5.821 18 Si 1.020 2.980 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.245 1.245 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.417 0.583 33 H 0.423 0.577 34 H 0.176 0.824 35 H 0.278 0.722 36 H 0.188 0.812 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -15.492 -16.318 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C 0.006 3.994 4 N -0.338 5.338 5 C 0.303 3.697 6 O -0.420 6.420 7 C 0.267 3.733 8 O -0.422 6.422 9 N -0.227 5.227 10 C -0.163 4.163 11 C -0.224 4.224 12 N -0.139 5.139 13 N 0.069 4.931 14 C -0.484 4.484 15 H 0.159 0.841 16 C -0.218 4.218 17 N -0.449 5.449 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.168 1.168 22 C -0.226 4.226 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.161 4.161 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.261 0.739 34 H 0.193 0.807 35 H 0.088 0.912 36 H 0.205 0.795 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.934 -15.305 -15.092 22.054 hybrid contribution 0.228 0.384 -0.130 0.465 sum 5.162 -14.921 -15.222 21.932 Atomic orbital electron populations 1.21956 0.93339 1.02718 1.01939 1.21444 0.96444 0.92200 0.97095 1.21827 0.99093 0.91846 0.86637 1.45788 1.50335 1.10206 1.27436 1.19653 0.81293 0.83545 0.85231 1.90734 1.37192 1.67315 1.46757 1.20305 0.82924 0.82740 0.87328 1.90641 1.37556 1.66879 1.47093 1.42090 1.47329 1.10484 1.22815 1.17298 1.11215 0.93137 0.94653 1.24252 1.03183 1.00424 0.94533 1.78154 1.21012 0.91797 1.22952 1.44847 1.26645 1.08392 1.13243 1.20656 1.33690 0.87485 1.06545 0.84085 1.26894 0.93971 1.03400 0.97533 1.70380 1.23241 1.32134 1.19096 0.84578 0.80234 0.74799 0.76523 1.18863 1.20130 1.16789 1.22005 1.09080 0.97004 0.94492 1.22557 1.00836 0.96141 0.96572 1.22476 1.01200 0.95856 0.96409 1.22361 0.99404 0.98109 0.96230 1.22199 1.00156 0.96760 0.95720 0.92029 0.91007 0.93272 0.90771 0.90912 0.74525 0.73917 0.80737 0.91237 0.79491 0.92037 0.91471 0.90940 0.91405 0.90672 0.91704 0.90268 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.97 71.98 0.57 -1.27 16 2 C -0.07 -0.93 0.66 -51.46 -0.03 -0.97 16 3 C 0.13 2.24 4.21 86.38 0.36 2.61 16 4 N -0.68 -15.48 5.05 -464.56 -2.34 -17.82 16 5 C 0.52 15.35 7.88 87.23 0.69 16.04 16 6 O -0.54 -17.25 16.47 -3.30 -0.05 -17.31 16 7 C 0.49 17.40 7.85 87.23 0.69 18.09 16 8 O -0.54 -22.08 13.62 -3.39 -0.05 -22.13 16 9 N -0.58 -21.68 5.45 -305.33 -1.66 -23.35 16 10 C -0.06 -2.63 6.90 37.83 0.26 -2.37 16 11 C -0.05 -2.59 10.85 85.44 0.93 -1.66 16 12 N -0.31 -18.29 10.39 -56.44 -0.59 -18.88 16 13 N -0.16 -9.01 3.73 -189.97 -0.71 -9.72 16 14 C -0.35 -18.51 10.25 84.02 0.86 -17.65 16 15 H 0.14 6.42 7.83 -2.91 -0.02 6.39 16 16 C -0.01 -0.30 5.50 84.96 0.47 0.16 16 17 N -0.82 -46.76 11.81 21.66 0.26 -46.51 16 18 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 20 H -0.28 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 22 C -0.07 -3.49 11.50 83.41 0.96 -2.53 16 23 C -0.12 -1.69 5.37 31.67 0.17 -1.52 16 24 C -0.12 -1.34 6.91 31.89 0.22 -1.12 16 25 C -0.12 -1.21 6.83 31.67 0.22 -0.99 16 26 C -0.11 -1.14 6.11 31.32 0.19 -0.95 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.74 6.81 -2.38 -0.02 0.72 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 32 H 0.42 9.04 6.43 -92.71 -0.60 8.45 16 33 H 0.42 13.28 8.29 -92.70 -0.77 12.51 16 34 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 35 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.19 6.97 8.06 -2.91 -0.02 6.95 16 37 H 0.06 0.96 7.84 -2.39 -0.02 0.94 16 38 H 0.07 0.96 7.84 -2.39 -0.02 0.95 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.70 7.67 -2.38 -0.02 0.68 16 44 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 Total: -1.00 -70.79 363.94 3.11 -67.69 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.32 Total: 41.97 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.55 Total: 5.86 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -5.05 Total: -116.27 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.10 Total: -39.43 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -70.79 3.11 -67.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746396283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.814 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds