Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.01675 * 2 1 4 4 C 1.54266 * 110.03468 * 238.55092 * 2 1 3 5 5 C 1.54885 * 104.19692 * 264.32661 * 4 2 1 6 6 C 1.54960 * 102.77998 * 322.08720 * 5 4 2 7 7 C 1.53878 * 110.02798 * 121.38604 * 2 1 3 8 8 H 1.09000 * 110.03146 * 359.95250 * 7 2 1 9 9 N 1.46502 * 110.03260 * 238.56986 * 7 2 1 10 10 C 1.34771 * 119.99864 * 155.69263 * 9 7 2 11 11 O 1.21369 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.49304 * 120.00091 * 180.02562 * 10 9 7 13 13 O 1.21410 * 119.99884 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00373 * 179.97438 * 12 10 9 15 15 C 1.40295 * 120.00050 * 179.97438 * 14 12 10 16 16 C 1.40727 * 126.10324 * 0.15595 * 15 14 12 17 17 N 1.30876 * 108.37651 * 180.28845 * 16 15 14 18 18 N 1.40063 * 108.43314 * 359.74418 * 17 16 15 19 19 C 1.37296 * 126.05040 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99985 * 180.02562 * 19 18 17 21 21 C 1.39004 * 120.00239 * 0.02562 * 19 18 17 22 22 N 1.31280 * 120.00152 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00266 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46825 * 60.00318 * 23 21 19 25 25 H 1.48491 * 109.47358 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47211 * 300.00858 * 23 21 19 27 27 C 1.35787 * 126.09753 * 179.97438 * 15 14 12 28 28 H 1.08995 * 109.47715 * 298.61516 * 1 2 3 29 29 H 1.09003 * 109.46922 * 58.61550 * 1 2 3 30 30 H 1.09006 * 109.47114 * 178.60778 * 1 2 3 31 31 H 1.08996 * 109.47025 * 181.38662 * 3 2 1 32 32 H 1.09002 * 109.47052 * 301.38731 * 3 2 1 33 33 H 1.08997 * 109.47630 * 61.38924 * 3 2 1 34 34 H 1.08998 * 110.48410 * 23.00748 * 4 2 1 35 35 H 1.09006 * 110.48294 * 145.64889 * 4 2 1 36 36 H 1.09008 * 110.75396 * 80.37601 * 5 4 2 37 37 H 1.09001 * 110.75571 * 203.55536 * 5 4 2 38 38 H 1.09004 * 110.47598 * 279.23449 * 6 5 4 39 39 H 1.08996 * 110.53044 * 156.57116 * 6 5 4 40 40 H 0.96993 * 120.00054 * 335.69295 * 9 7 2 41 41 H 0.96993 * 119.99800 * 359.97438 * 14 12 10 42 42 H 1.07995 * 125.80852 * 0.03256 * 16 15 14 43 43 H 0.96999 * 120.00347 * 179.97438 * 22 21 19 44 44 H 1.08002 * 126.25482 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7562 -1.2364 5 6 2.3281 -2.1905 -0.7179 6 6 2.8871 -1.9410 0.7057 7 6 2.0570 -0.7529 1.2342 8 1 1.2227 -1.1176 1.8335 9 7 2.9032 0.1321 2.0385 10 6 3.0710 -0.1084 3.3539 11 8 2.5214 -1.0584 3.8721 12 6 3.9329 0.7939 4.1738 13 8 4.4830 1.7440 3.6554 14 7 4.1003 0.5538 5.4894 15 6 4.9107 1.4013 6.2596 16 6 5.6033 2.5346 5.7943 17 7 6.2534 3.0625 6.8000 18 7 5.9989 2.2951 7.9438 19 6 6.5009 2.5269 9.2005 20 1 6.2395 1.8690 10.0162 21 6 7.3456 3.6082 9.4230 22 7 7.6630 4.4081 8.4316 23 14 8.0281 3.9239 11.1329 24 1 8.8246 2.7501 11.5725 25 1 8.8955 5.1288 11.1050 26 1 6.9064 4.1438 12.0808 27 6 5.1638 1.2765 7.5878 28 1 -0.3634 0.4921 0.9021 29 1 -0.3633 0.5352 -0.8773 30 1 -0.3634 -1.0274 -0.0250 31 1 3.1433 1.4273 -0.0249 32 1 1.6752 1.9621 -0.8773 33 1 1.7158 1.9474 0.9021 34 1 1.3062 -0.7707 -2.0250 35 1 2.9812 -0.3009 -1.5964 36 1 1.4031 -2.7655 -0.6737 37 1 3.0652 -2.6950 -1.3427 38 1 3.9438 -1.6775 0.6597 39 1 2.7390 -2.8193 1.3339 40 1 3.3427 0.8911 1.6243 41 1 3.6605 -0.2050 5.9037 42 1 5.6021 2.9032 4.7792 43 1 8.2521 5.1629 8.5870 44 1 4.7784 0.5085 8.2421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746433613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = 7.646044 kcal Electronic energy + Delta-G solvation = -26616.667729 eV Core-core repulsion = 22763.801834 eV Total energy + Delta-G solvation = -3852.865896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80362 -39.86461 -38.94851 -37.67857 -34.67238 -33.69807 -33.09577 -32.54897 -30.32530 -28.49130 -27.92641 -27.60230 -25.47649 -24.77731 -23.49691 -21.24323 -20.93562 -20.18493 -19.51950 -19.21921 -17.95297 -17.45378 -16.57197 -15.75952 -15.57258 -15.47787 -15.44920 -15.01130 -14.75073 -14.16776 -13.87533 -13.74606 -13.64607 -13.32965 -13.05563 -13.00266 -12.97558 -12.53081 -12.28122 -11.80699 -11.73093 -11.56011 -11.37234 -11.27151 -11.23339 -11.16137 -10.90488 -10.86325 -10.83763 -10.75864 -10.58206 -10.28209 -9.22829 -9.20094 -9.10027 -8.87382 -8.12888 -6.77660 -6.60285 -4.27674 1.68003 2.64137 2.94508 3.03644 3.07330 3.33914 3.72138 3.76257 3.97548 4.11511 4.26078 4.37819 4.47722 4.62119 4.92184 4.98203 4.98268 5.00334 5.02827 5.03993 5.21702 5.34305 5.37920 5.46743 5.55693 5.62071 5.63219 5.72568 5.81338 5.90970 5.97096 6.03453 6.05935 6.20240 6.34186 6.36297 6.76424 6.88661 6.93038 7.16433 7.26811 7.77427 7.88273 8.12175 8.18679 8.49472 8.69893 9.31293 9.59930 10.35470 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.002289 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.360290 B =12228.032746 C =12527.196358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.147 3.853 8 H 0.095 0.905 9 N -0.700 5.700 10 C 0.513 3.487 11 O -0.530 6.530 12 C 0.483 3.517 13 O -0.524 6.524 14 N -0.583 5.583 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -9.510 -15.625 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.208 4.208 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.042 3.958 8 H 0.113 0.887 9 N -0.356 5.356 10 C 0.295 3.705 11 O -0.406 6.406 12 C 0.263 3.737 13 O -0.402 6.402 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.169 -8.342 -15.291 20.169 hybrid contribution -0.301 -0.651 0.571 0.916 sum -10.470 -8.993 -14.720 20.179 Atomic orbital electron populations 1.21898 0.93472 1.02030 1.02153 1.21423 0.96284 0.95710 0.94267 1.21941 1.01049 0.95047 1.02727 1.22499 1.01121 0.95215 0.96436 1.22462 1.01019 0.96746 0.95863 1.22823 1.00134 0.98185 0.96351 1.21802 0.93327 0.89437 0.91233 0.88692 1.46168 1.49583 1.31785 1.08107 1.20327 0.81748 0.85184 0.83258 1.90719 1.48032 1.29876 1.71949 1.19699 0.84302 0.86484 0.83167 1.90650 1.48500 1.29757 1.71269 1.42151 1.45028 1.28350 1.07069 1.17257 1.09379 1.00096 0.90760 1.24146 1.00435 0.95761 0.99930 1.78261 1.23482 1.17286 0.90103 1.44555 1.24799 1.14057 1.07080 1.19876 1.28752 1.13747 0.83054 0.86486 1.25664 0.96262 0.95241 0.99962 1.70195 1.26700 1.11510 1.31014 0.85870 0.79197 0.78637 0.80327 1.19089 1.20099 1.19094 1.21308 1.07037 1.00106 0.94477 0.92341 0.92213 0.92284 0.92021 0.91846 0.91684 0.91221 0.91145 0.91299 0.91254 0.90885 0.90850 0.74529 0.75608 0.80567 0.91300 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.14 37.16 0.30 -0.67 16 2 C -0.08 -0.59 0.94 -153.39 -0.14 -0.74 16 3 C -0.15 -1.20 7.04 37.16 0.26 -0.94 16 4 C -0.12 -0.76 5.90 -25.07 -0.15 -0.91 16 5 C -0.12 -0.85 6.91 -24.70 -0.17 -1.02 16 6 C -0.14 -1.26 6.54 -25.03 -0.16 -1.42 16 7 C 0.15 1.47 2.87 -66.81 -0.19 1.28 16 8 H 0.10 1.06 7.12 -51.93 -0.37 0.69 16 9 N -0.70 -8.56 4.48 -53.20 -0.24 -8.80 16 10 C 0.51 7.91 7.88 -11.66 -0.09 7.82 16 11 O -0.53 -8.83 16.14 5.48 0.09 -8.74 16 12 C 0.48 8.84 7.85 -11.65 -0.09 8.75 16 13 O -0.52 -10.66 13.62 5.44 0.07 -10.58 16 14 N -0.58 -11.15 5.45 -10.45 -0.06 -11.20 16 15 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 17 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.21 11.81 55.50 0.66 -20.55 16 23 Si 0.94 18.72 29.55 -169.99 -5.02 13.69 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.50 6.91 -51.93 -0.36 0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.59 7.72 -51.93 -0.40 0.19 16 34 H 0.07 0.40 7.84 -51.93 -0.41 -0.01 16 35 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.41 4.83 5.26 -40.82 -0.21 4.62 16 41 H 0.41 6.76 8.29 -40.82 -0.34 6.43 16 42 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -31.91 361.69 -6.56 -38.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.15 Total: 13.71 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.64 Total: -0.46 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.64 Total: -51.55 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.91 -6.56 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746433613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.121 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds