Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.01675 * 2 1 4 4 C 1.54266 * 110.03468 * 238.55092 * 2 1 3 5 5 C 1.54885 * 104.19692 * 264.32661 * 4 2 1 6 6 C 1.54960 * 102.77998 * 322.08720 * 5 4 2 7 7 C 1.53878 * 110.02798 * 121.38604 * 2 1 3 8 8 H 1.09000 * 110.03146 * 359.95250 * 7 2 1 9 9 N 1.46502 * 110.03260 * 238.56986 * 7 2 1 10 10 C 1.34771 * 119.99864 * 155.69263 * 9 7 2 11 11 O 1.21369 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.49304 * 120.00091 * 180.02562 * 10 9 7 13 13 O 1.21410 * 119.99884 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00373 * 179.97438 * 12 10 9 15 15 C 1.40295 * 120.00050 * 179.97438 * 14 12 10 16 16 C 1.40727 * 126.10324 * 0.15595 * 15 14 12 17 17 N 1.30876 * 108.37651 * 180.28845 * 16 15 14 18 18 N 1.40063 * 108.43314 * 359.74418 * 17 16 15 19 19 C 1.37296 * 126.05040 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99985 * 180.02562 * 19 18 17 21 21 C 1.39004 * 120.00239 * 0.02562 * 19 18 17 22 22 N 1.31280 * 120.00152 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00266 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46825 * 60.00318 * 23 21 19 25 25 H 1.48491 * 109.47358 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47211 * 300.00858 * 23 21 19 27 27 C 1.35787 * 126.09753 * 179.97438 * 15 14 12 28 28 H 1.08995 * 109.47715 * 298.61516 * 1 2 3 29 29 H 1.09003 * 109.46922 * 58.61550 * 1 2 3 30 30 H 1.09006 * 109.47114 * 178.60778 * 1 2 3 31 31 H 1.08996 * 109.47025 * 181.38662 * 3 2 1 32 32 H 1.09002 * 109.47052 * 301.38731 * 3 2 1 33 33 H 1.08997 * 109.47630 * 61.38924 * 3 2 1 34 34 H 1.08998 * 110.48410 * 23.00748 * 4 2 1 35 35 H 1.09006 * 110.48294 * 145.64889 * 4 2 1 36 36 H 1.09008 * 110.75396 * 80.37601 * 5 4 2 37 37 H 1.09001 * 110.75571 * 203.55536 * 5 4 2 38 38 H 1.09004 * 110.47598 * 279.23449 * 6 5 4 39 39 H 1.08996 * 110.53044 * 156.57116 * 6 5 4 40 40 H 0.96993 * 120.00054 * 335.69295 * 9 7 2 41 41 H 0.96993 * 119.99800 * 359.97438 * 14 12 10 42 42 H 1.07995 * 125.80852 * 0.03256 * 16 15 14 43 43 H 0.96999 * 120.00347 * 179.97438 * 22 21 19 44 44 H 1.08002 * 126.25482 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7562 -1.2364 5 6 2.3281 -2.1905 -0.7179 6 6 2.8871 -1.9410 0.7057 7 6 2.0570 -0.7529 1.2342 8 1 1.2227 -1.1176 1.8335 9 7 2.9032 0.1321 2.0385 10 6 3.0710 -0.1084 3.3539 11 8 2.5214 -1.0584 3.8721 12 6 3.9329 0.7939 4.1738 13 8 4.4830 1.7440 3.6554 14 7 4.1003 0.5538 5.4894 15 6 4.9107 1.4013 6.2596 16 6 5.6033 2.5346 5.7943 17 7 6.2534 3.0625 6.8000 18 7 5.9989 2.2951 7.9438 19 6 6.5009 2.5269 9.2005 20 1 6.2395 1.8690 10.0162 21 6 7.3456 3.6082 9.4230 22 7 7.6630 4.4081 8.4316 23 14 8.0281 3.9239 11.1329 24 1 8.8246 2.7501 11.5725 25 1 8.8955 5.1288 11.1050 26 1 6.9064 4.1438 12.0808 27 6 5.1638 1.2765 7.5878 28 1 -0.3634 0.4921 0.9021 29 1 -0.3633 0.5352 -0.8773 30 1 -0.3634 -1.0274 -0.0250 31 1 3.1433 1.4273 -0.0249 32 1 1.6752 1.9621 -0.8773 33 1 1.7158 1.9474 0.9021 34 1 1.3062 -0.7707 -2.0250 35 1 2.9812 -0.3009 -1.5964 36 1 1.4031 -2.7655 -0.6737 37 1 3.0652 -2.6950 -1.3427 38 1 3.9438 -1.6775 0.6597 39 1 2.7390 -2.8193 1.3339 40 1 3.3427 0.8911 1.6243 41 1 3.6605 -0.2050 5.9037 42 1 5.6021 2.9032 4.7792 43 1 8.2521 5.1629 8.5870 44 1 4.7784 0.5085 8.2421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746433613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = -13.559520 kcal Electronic energy + Delta-G solvation = -26617.587271 eV Core-core repulsion = 22763.801834 eV Total energy + Delta-G solvation = -3853.785438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12752 -41.42749 -40.23862 -39.02783 -36.25145 -35.20070 -34.61746 -33.19196 -32.30663 -29.99095 -29.05499 -28.31997 -27.11947 -25.84907 -24.72711 -22.93107 -22.06184 -21.43920 -21.18938 -20.29605 -19.34001 -19.00870 -17.75559 -17.45513 -16.93051 -16.84605 -16.76482 -16.02754 -15.79730 -15.67789 -15.37583 -15.13455 -14.86582 -14.67327 -14.42656 -13.97610 -13.71360 -13.51488 -13.39569 -13.23169 -13.00169 -12.94353 -12.88863 -12.50049 -12.41321 -12.13518 -12.00164 -11.97434 -11.85314 -11.58584 -11.44019 -11.36486 -11.06279 -10.88507 -10.58589 -10.23179 -10.14993 -8.63659 -8.49350 -6.27350 0.27163 1.30059 1.30635 1.42071 1.57036 1.72373 2.02968 2.12092 2.52060 2.58112 2.93079 3.07079 3.40553 3.53756 3.61141 3.83605 4.28428 4.34066 4.35076 4.38019 4.38633 4.47495 4.51259 4.72294 4.78695 4.82549 4.94104 4.94296 4.96863 4.98103 5.03646 5.12582 5.19576 5.20541 5.25933 5.29361 5.33323 5.37382 5.42340 5.51019 5.89523 6.01483 6.24095 6.47142 6.66380 6.80181 7.05686 7.40244 7.61641 8.49670 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.002289 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.360290 B =12228.032746 C =12527.196358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.152 4.152 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.137 4.137 7 C 0.140 3.860 8 H 0.086 0.914 9 N -0.684 5.684 10 C 0.522 3.478 11 O -0.541 6.541 12 C 0.484 3.516 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.057 4.057 16 C -0.049 4.049 17 N -0.307 5.307 18 N -0.162 5.162 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.076 4.076 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.418 0.582 41 H 0.423 0.577 42 H 0.176 0.824 43 H 0.278 0.722 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 -10.997 -16.038 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.209 4.209 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.176 4.176 7 C 0.037 3.963 8 H 0.104 0.896 9 N -0.339 5.339 10 C 0.302 3.698 11 O -0.419 6.419 12 C 0.266 3.734 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.139 5.139 18 N 0.070 4.930 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.177 1.177 25 H -0.202 1.202 26 H -0.177 1.177 27 C -0.227 4.227 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.259 0.741 41 H 0.261 0.739 42 H 0.192 0.808 43 H 0.088 0.912 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.328 -9.864 -15.749 21.764 hybrid contribution -0.055 -0.264 0.532 0.596 sum -11.383 -10.128 -15.217 21.534 Atomic orbital electron populations 1.21897 0.92635 1.02616 1.02277 1.21429 0.96883 0.95319 0.93606 1.21955 1.00922 0.95277 1.02768 1.22495 1.01677 0.94564 0.96074 1.22453 1.01588 0.97239 0.94138 1.22808 0.99593 0.97271 0.97915 1.22077 0.92791 0.89772 0.91683 0.89635 1.46236 1.48854 1.31823 1.07019 1.19723 0.81531 0.84570 0.83984 1.90722 1.48651 1.30182 1.72336 1.20327 0.83716 0.86304 0.83020 1.90640 1.49131 1.30738 1.71687 1.42089 1.44930 1.28400 1.07255 1.17299 1.08588 0.99412 0.91016 1.24249 1.01405 0.97110 0.99648 1.78158 1.25201 1.19178 0.91364 1.44840 1.26074 1.14960 1.07159 1.20627 1.29489 1.14906 0.83449 0.84087 1.26893 0.95928 0.94370 1.04537 1.70368 1.28055 1.12500 1.33918 0.84640 0.78561 0.78586 0.74365 1.17740 1.20182 1.17748 1.22003 1.05675 0.99826 0.95161 0.93488 0.90779 0.91561 0.92281 0.90268 0.93141 0.89495 0.90990 0.90351 0.90238 0.91697 0.91700 0.74110 0.73947 0.80754 0.91204 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.14 71.98 0.59 -1.04 16 2 C -0.07 -0.98 0.94 -51.46 -0.05 -1.03 16 3 C -0.15 -2.21 7.04 71.98 0.51 -1.70 16 4 C -0.11 -1.16 5.90 31.67 0.19 -0.97 16 5 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 6 C -0.14 -2.35 6.54 31.69 0.21 -2.15 16 7 C 0.14 2.65 2.87 45.72 0.13 2.78 16 8 H 0.09 1.83 7.12 -2.39 -0.02 1.81 16 9 N -0.68 -16.28 4.48 -440.57 -1.97 -18.25 16 10 C 0.52 15.77 7.88 87.22 0.69 16.46 16 11 O -0.54 -17.56 16.14 -3.31 -0.05 -17.62 16 12 C 0.48 17.68 7.85 87.22 0.69 18.37 16 13 O -0.54 -22.38 13.62 -3.43 -0.05 -22.43 16 14 N -0.58 -21.94 5.45 -305.32 -1.66 -23.61 16 15 C -0.06 -2.65 6.90 37.83 0.26 -2.39 16 16 C -0.05 -2.62 10.85 85.44 0.93 -1.69 16 17 N -0.31 -18.33 10.39 -56.43 -0.59 -18.92 16 18 N -0.16 -8.99 3.73 -189.97 -0.71 -9.70 16 19 C -0.35 -18.60 10.25 84.02 0.86 -17.74 16 20 H 0.14 6.42 7.83 -2.91 -0.02 6.39 16 21 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 22 N -0.82 -46.81 11.81 21.66 0.26 -46.56 16 23 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 27 C -0.08 -3.55 11.50 83.41 0.96 -2.60 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.88 6.91 -2.39 -0.02 0.87 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.88 7.72 -2.39 -0.02 0.86 16 34 H 0.09 0.67 7.84 -2.39 -0.02 0.65 16 35 H 0.07 0.76 7.84 -2.38 -0.02 0.74 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.22 8.05 -2.38 -0.02 1.20 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 9.54 5.26 -92.71 -0.49 9.05 16 41 H 0.42 13.49 8.29 -92.71 -0.77 12.72 16 42 H 0.18 9.19 5.92 -2.91 -0.02 9.18 16 43 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.19 7.02 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -71.18 361.69 3.67 -67.51 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.21 Total: 43.99 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.64 Total: 5.40 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -4.68 Total: -117.04 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.10 Total: -40.04 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -71.18 3.67 -67.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746433613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.952 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds