Wall clock time and date at job start Tue Mar 31 2020 12:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.05540 * 2 1 4 4 C 1.54269 * 110.03389 * 238.58182 * 2 1 3 5 5 C 1.54884 * 104.19452 * 217.10239 * 4 2 1 6 6 C 1.54890 * 102.75101 * 37.94253 * 5 4 2 7 7 C 1.53876 * 110.03358 * 121.41436 * 2 1 3 8 8 H 1.09008 * 110.07393 * 238.59520 * 7 2 1 9 9 N 1.46500 * 110.03400 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00568 * 203.62181 * 9 7 2 11 11 O 1.21374 * 119.99499 * 359.97438 * 10 9 7 12 12 C 1.49299 * 120.00375 * 180.02562 * 10 9 7 13 13 O 1.21403 * 120.00147 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99882 * 180.27493 * 12 10 9 15 15 C 1.40303 * 119.99779 * 179.72222 * 14 12 10 16 16 C 1.40720 * 126.10082 * 359.69355 * 15 14 12 17 17 N 1.30882 * 108.37738 * 179.81208 * 16 15 14 18 18 N 1.40065 * 108.43169 * 0.44428 * 17 16 15 19 19 C 1.37296 * 126.05279 * 179.72122 * 18 17 16 20 20 H 1.08000 * 119.99788 * 174.12707 * 19 18 17 21 21 C 1.39009 * 119.99912 * 354.11615 * 19 18 17 22 22 N 1.31282 * 119.99999 * 5.94184 * 21 19 18 23 23 Si 1.86793 * 119.99830 * 185.94128 * 21 19 18 24 24 H 1.48499 * 109.47425 * 94.98059 * 23 21 19 25 25 H 1.48501 * 109.47285 * 214.98476 * 23 21 19 26 26 H 1.48509 * 109.47402 * 334.98085 * 23 21 19 27 27 C 1.35787 * 126.10045 * 179.97438 * 15 14 12 28 28 H 1.08998 * 109.46878 * 298.58641 * 1 2 3 29 29 H 1.08997 * 109.47086 * 58.58934 * 1 2 3 30 30 H 1.09003 * 109.46371 * 178.58262 * 1 2 3 31 31 H 1.09002 * 109.47145 * 181.41888 * 3 2 1 32 32 H 1.09007 * 109.46617 * 301.41374 * 3 2 1 33 33 H 1.08992 * 109.47332 * 61.41286 * 3 2 1 34 34 H 1.09000 * 110.48373 * 98.42373 * 4 2 1 35 35 H 1.09000 * 110.48576 * 335.78383 * 4 2 1 36 36 H 1.08998 * 110.75919 * 279.62408 * 5 4 2 37 37 H 1.09004 * 110.75534 * 156.25457 * 5 4 2 38 38 H 1.09001 * 110.48592 * 203.37406 * 6 5 4 39 39 H 1.09006 * 110.48668 * 80.73506 * 6 5 4 40 40 H 0.97001 * 119.99734 * 23.62295 * 9 7 2 41 41 H 0.97001 * 120.00724 * 359.72605 * 14 12 10 42 42 H 1.08002 * 125.80834 * 0.02562 * 16 15 14 43 43 H 0.96997 * 120.00089 * 179.97438 * 22 21 19 44 44 H 1.08006 * 126.24849 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5006 -0.7191 6 6 2.8876 -1.9405 0.7036 7 6 2.0572 -0.7535 1.2337 8 1 2.6866 -0.0957 1.8332 9 7 0.9360 -1.2455 2.0382 10 6 1.1083 -1.4992 3.3506 11 8 2.1926 -1.3205 3.8659 12 6 -0.0341 -2.0012 4.1702 13 8 -1.1185 -2.1805 3.6547 14 7 0.1369 -2.2496 5.4838 15 6 -0.9383 -2.7158 6.2553 16 6 -2.2447 -2.9617 5.7939 17 7 -2.9639 -3.3902 6.8000 18 7 -2.1525 -3.4253 7.9412 19 6 -2.5429 -3.8142 9.1987 20 1 -1.8126 -3.8943 9.9902 21 6 -3.8784 -4.1045 9.4530 22 7 -4.7458 -4.1206 8.4678 23 14 -4.4385 -4.4717 11.1967 24 1 -4.9568 -3.2287 11.8224 25 1 -5.5135 -5.4959 11.1660 26 1 -3.2906 -4.9828 11.9883 27 6 -0.9052 -3.0051 7.5816 28 1 -0.3633 0.4917 0.9024 29 1 -0.3633 0.5356 -0.8770 30 1 -0.3632 -1.0274 -0.0254 31 1 3.1444 1.4262 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9023 34 1 2.3297 -0.0536 -2.0255 35 1 1.3143 -1.4660 -1.5966 36 1 4.1710 -0.8290 -0.6751 37 1 3.5326 -2.3678 -1.3422 38 1 3.7639 -2.1036 1.3310 39 1 2.2773 -2.8426 0.6573 40 1 0.0696 -1.3888 1.6263 41 1 1.0032 -2.1061 5.8959 42 1 -2.5936 -2.8239 4.7811 43 1 -5.6776 -4.3235 8.6452 44 1 -0.0479 -2.9187 8.2329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746433614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:14 Heat of formation + Delta-G solvation = 7.517946 kcal Electronic energy + Delta-G solvation = -26617.093617 eV Core-core repulsion = 22764.222166 eV Total energy + Delta-G solvation = -3852.871450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80631 -39.86792 -38.95119 -37.68030 -34.67361 -33.69916 -33.09810 -32.55302 -30.32730 -28.49160 -27.92980 -27.60511 -25.47730 -24.77938 -23.49900 -21.24556 -20.93631 -20.17964 -19.51937 -19.21991 -17.95549 -17.45605 -16.57447 -15.76140 -15.57729 -15.48306 -15.45087 -15.01138 -14.75407 -14.16591 -13.87726 -13.74239 -13.64928 -13.33055 -13.06413 -13.00039 -12.98255 -12.53228 -12.28044 -11.80846 -11.74514 -11.56404 -11.37001 -11.31496 -11.21954 -11.15282 -10.90179 -10.86413 -10.82922 -10.76065 -10.55004 -10.28023 -9.23701 -9.20521 -9.09893 -8.87386 -8.12861 -6.77867 -6.61266 -4.28059 1.67877 2.64044 2.93141 3.03807 3.08874 3.33783 3.71804 3.76072 3.97430 4.11409 4.25895 4.37515 4.47634 4.62096 4.92194 4.96925 4.98244 5.00139 5.02730 5.03932 5.21582 5.34355 5.37745 5.46616 5.55608 5.62009 5.63024 5.72515 5.81186 5.90959 5.96873 6.03417 6.05915 6.20031 6.34145 6.36409 6.76377 6.89212 6.92770 7.16177 7.26668 7.77514 7.88255 8.11986 8.18512 8.49270 8.69607 9.31319 9.59656 10.34867 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.002291 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.305133 B =12218.054871 C =12524.292682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.147 3.853 8 H 0.095 0.905 9 N -0.700 5.700 10 C 0.513 3.487 11 O -0.530 6.530 12 C 0.483 3.517 13 O -0.524 6.524 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 7.151 -15.661 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.042 3.958 8 H 0.113 0.887 9 N -0.357 5.357 10 C 0.295 3.705 11 O -0.406 6.406 12 C 0.264 3.736 13 O -0.402 6.402 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.086 0.914 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.364 6.704 -15.319 20.218 hybrid contribution 0.693 0.122 0.577 0.910 sum 12.057 6.826 -14.742 20.231 Atomic orbital electron populations 1.21945 0.93974 1.02136 1.02734 1.21423 0.96168 0.95824 0.94264 1.21897 1.01051 0.94448 1.02155 1.22501 0.97462 0.98880 0.96433 1.22454 0.97699 1.00055 0.95883 1.22817 1.00160 0.98168 0.96365 1.21800 0.87363 0.95396 0.91219 0.88718 1.46176 1.15421 1.65679 1.08385 1.20327 0.88635 0.78335 0.83231 1.90721 1.26639 1.51271 1.71939 1.19696 0.88495 0.82289 0.83154 1.90648 1.25892 1.52341 1.71287 1.42155 1.12919 1.60338 1.07203 1.17261 0.89232 1.20093 0.90901 1.24144 0.90575 1.05617 0.99911 1.78256 1.16319 1.24555 0.90060 1.44561 1.04372 1.34602 1.07017 1.19929 0.94765 1.47176 0.83600 0.86428 1.25669 0.95668 0.95672 1.00093 1.70212 1.03463 1.34417 1.31265 0.85790 0.79153 0.78730 0.80372 1.19582 1.20062 1.18711 1.21315 0.91600 1.15367 0.94543 0.91680 0.91832 0.92006 0.92279 0.92210 0.92340 0.91221 0.91145 0.91271 0.91254 0.90853 0.90889 0.74521 0.75601 0.80566 0.91367 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.04 37.16 0.26 -0.94 16 2 C -0.08 -0.59 0.94 -153.39 -0.14 -0.74 16 3 C -0.14 -0.97 8.15 37.16 0.30 -0.66 16 4 C -0.12 -0.76 5.90 -25.07 -0.15 -0.91 16 5 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 6 C -0.14 -1.26 6.52 -25.07 -0.16 -1.43 16 7 C 0.15 1.47 2.86 -66.81 -0.19 1.28 16 8 H 0.09 1.06 7.14 -51.92 -0.37 0.69 16 9 N -0.70 -8.56 4.50 -53.20 -0.24 -8.80 16 10 C 0.51 7.91 7.87 -11.66 -0.09 7.81 16 11 O -0.53 -8.82 16.15 5.48 0.09 -8.74 16 12 C 0.48 8.84 7.85 -11.66 -0.09 8.75 16 13 O -0.52 -10.65 13.62 5.45 0.07 -10.57 16 14 N -0.58 -11.14 5.45 -10.46 -0.06 -11.20 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 17 N -0.26 -7.51 10.41 30.81 0.32 -7.19 16 18 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 19 C -0.32 -8.45 10.24 -14.82 -0.15 -8.61 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.19 11.84 55.50 0.66 -20.53 16 23 Si 0.94 18.73 29.56 -169.99 -5.02 13.71 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 27 C -0.08 -1.82 11.50 -16.38 -0.19 -2.00 16 28 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.40 7.84 -51.93 -0.41 -0.01 16 35 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 40 H 0.41 4.83 5.23 -40.82 -0.21 4.62 16 41 H 0.41 6.76 8.29 -40.82 -0.34 6.42 16 42 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 43 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -31.93 361.73 -6.56 -38.49 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.15 Total: 13.64 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.64 Total: -0.43 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.64 Total: -51.55 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.31 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.93 -6.56 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746433614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds