Wall clock time and date at job start Tue Mar 31 2020 12:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.05540 * 2 1 4 4 C 1.54269 * 110.03389 * 238.58182 * 2 1 3 5 5 C 1.54884 * 104.19452 * 217.10239 * 4 2 1 6 6 C 1.54890 * 102.75101 * 37.94253 * 5 4 2 7 7 C 1.53876 * 110.03358 * 121.41436 * 2 1 3 8 8 H 1.09008 * 110.07393 * 238.59520 * 7 2 1 9 9 N 1.46500 * 110.03400 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00568 * 203.62181 * 9 7 2 11 11 O 1.21374 * 119.99499 * 359.97438 * 10 9 7 12 12 C 1.49299 * 120.00375 * 180.02562 * 10 9 7 13 13 O 1.21403 * 120.00147 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99882 * 180.27493 * 12 10 9 15 15 C 1.40303 * 119.99779 * 179.72222 * 14 12 10 16 16 C 1.40720 * 126.10082 * 359.69355 * 15 14 12 17 17 N 1.30882 * 108.37738 * 179.81208 * 16 15 14 18 18 N 1.40065 * 108.43169 * 0.44428 * 17 16 15 19 19 C 1.37296 * 126.05279 * 179.72122 * 18 17 16 20 20 H 1.08000 * 119.99788 * 174.12707 * 19 18 17 21 21 C 1.39009 * 119.99912 * 354.11615 * 19 18 17 22 22 N 1.31282 * 119.99999 * 5.94184 * 21 19 18 23 23 Si 1.86793 * 119.99830 * 185.94128 * 21 19 18 24 24 H 1.48499 * 109.47425 * 94.98059 * 23 21 19 25 25 H 1.48501 * 109.47285 * 214.98476 * 23 21 19 26 26 H 1.48509 * 109.47402 * 334.98085 * 23 21 19 27 27 C 1.35787 * 126.10045 * 179.97438 * 15 14 12 28 28 H 1.08998 * 109.46878 * 298.58641 * 1 2 3 29 29 H 1.08997 * 109.47086 * 58.58934 * 1 2 3 30 30 H 1.09003 * 109.46371 * 178.58262 * 1 2 3 31 31 H 1.09002 * 109.47145 * 181.41888 * 3 2 1 32 32 H 1.09007 * 109.46617 * 301.41374 * 3 2 1 33 33 H 1.08992 * 109.47332 * 61.41286 * 3 2 1 34 34 H 1.09000 * 110.48373 * 98.42373 * 4 2 1 35 35 H 1.09000 * 110.48576 * 335.78383 * 4 2 1 36 36 H 1.08998 * 110.75919 * 279.62408 * 5 4 2 37 37 H 1.09004 * 110.75534 * 156.25457 * 5 4 2 38 38 H 1.09001 * 110.48592 * 203.37406 * 6 5 4 39 39 H 1.09006 * 110.48668 * 80.73506 * 6 5 4 40 40 H 0.97001 * 119.99734 * 23.62295 * 9 7 2 41 41 H 0.97001 * 120.00724 * 359.72605 * 14 12 10 42 42 H 1.08002 * 125.80834 * 0.02562 * 16 15 14 43 43 H 0.96997 * 120.00089 * 179.97438 * 22 21 19 44 44 H 1.08006 * 126.24849 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5006 -0.7191 6 6 2.8876 -1.9405 0.7036 7 6 2.0572 -0.7535 1.2337 8 1 2.6866 -0.0957 1.8332 9 7 0.9360 -1.2455 2.0382 10 6 1.1083 -1.4992 3.3506 11 8 2.1926 -1.3205 3.8659 12 6 -0.0341 -2.0012 4.1702 13 8 -1.1185 -2.1805 3.6547 14 7 0.1369 -2.2496 5.4838 15 6 -0.9383 -2.7158 6.2553 16 6 -2.2447 -2.9617 5.7939 17 7 -2.9639 -3.3902 6.8000 18 7 -2.1525 -3.4253 7.9412 19 6 -2.5429 -3.8142 9.1987 20 1 -1.8126 -3.8943 9.9902 21 6 -3.8784 -4.1045 9.4530 22 7 -4.7458 -4.1206 8.4678 23 14 -4.4385 -4.4717 11.1967 24 1 -4.9568 -3.2287 11.8224 25 1 -5.5135 -5.4959 11.1660 26 1 -3.2906 -4.9828 11.9883 27 6 -0.9052 -3.0051 7.5816 28 1 -0.3633 0.4917 0.9024 29 1 -0.3633 0.5356 -0.8770 30 1 -0.3632 -1.0274 -0.0254 31 1 3.1444 1.4262 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9023 34 1 2.3297 -0.0536 -2.0255 35 1 1.3143 -1.4660 -1.5966 36 1 4.1710 -0.8290 -0.6751 37 1 3.5326 -2.3678 -1.3422 38 1 3.7639 -2.1036 1.3310 39 1 2.2773 -2.8426 0.6573 40 1 0.0696 -1.3888 1.6263 41 1 1.0032 -2.1061 5.8959 42 1 -2.5936 -2.8239 4.7811 43 1 -5.6776 -4.3235 8.6452 44 1 -0.0479 -2.9187 8.2329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746433614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:13 Heat of formation + Delta-G solvation = -13.708349 kcal Electronic energy + Delta-G solvation = -26618.014058 eV Core-core repulsion = 22764.222166 eV Total energy + Delta-G solvation = -3853.791892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12877 -41.42891 -40.24151 -39.02828 -36.25162 -35.20216 -34.61827 -33.19568 -32.30805 -29.99288 -29.05401 -28.32291 -27.12031 -25.84963 -24.72872 -22.93174 -22.06572 -21.43466 -21.18424 -20.29621 -19.34255 -19.00896 -17.75613 -17.46260 -16.93161 -16.84604 -16.76688 -16.02819 -15.79443 -15.68166 -15.36999 -15.14310 -14.87018 -14.67622 -14.42687 -13.97536 -13.71471 -13.53074 -13.39823 -13.23362 -13.00977 -12.98601 -12.86140 -12.49936 -12.41244 -12.07043 -11.99899 -11.97930 -11.85497 -11.58573 -11.44016 -11.36658 -11.08819 -10.88011 -10.58651 -10.23204 -10.15016 -8.63740 -8.50336 -6.27680 0.27138 1.28541 1.30689 1.42079 1.58846 1.71637 2.02849 2.11463 2.51951 2.58130 2.93115 3.05827 3.40507 3.53744 3.61026 3.83588 4.28508 4.34009 4.35030 4.38064 4.38565 4.47465 4.51495 4.72326 4.78651 4.82559 4.94121 4.94413 4.97273 4.98129 5.03578 5.12606 5.19418 5.20422 5.25927 5.29247 5.33281 5.37407 5.42340 5.51068 5.89730 6.01497 6.24035 6.47068 6.66179 6.80134 7.05604 7.40363 7.61441 8.49257 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.002291 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.305133 B =12218.054871 C =12524.292682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.137 4.137 7 C 0.141 3.859 8 H 0.085 0.915 9 N -0.684 5.684 10 C 0.522 3.478 11 O -0.541 6.541 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.057 4.057 16 C -0.048 4.048 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.353 4.353 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.243 1.243 27 C -0.075 4.075 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.418 0.582 41 H 0.423 0.577 42 H 0.176 0.824 43 H 0.278 0.722 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.573 7.745 -16.062 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.176 4.176 7 C 0.037 3.963 8 H 0.104 0.896 9 N -0.340 5.340 10 C 0.302 3.698 11 O -0.419 6.419 12 C 0.266 3.734 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.226 4.226 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.259 0.741 41 H 0.261 0.739 42 H 0.192 0.808 43 H 0.088 0.912 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.208 7.316 -15.766 21.829 hybrid contribution 0.238 -0.001 0.532 0.583 sum 13.446 7.314 -15.234 21.595 Atomic orbital electron populations 1.21958 0.94192 1.02017 1.02781 1.21429 0.95943 0.96262 0.93597 1.21896 1.01544 0.93699 1.02283 1.22498 0.97197 0.99046 0.96075 1.22445 0.98147 1.00672 0.94151 1.22801 0.99472 0.97399 0.97929 1.22075 0.86617 0.95941 0.91671 0.89648 1.46245 1.16381 1.64032 1.07297 1.19724 0.87327 0.78816 0.83954 1.90724 1.26526 1.52306 1.72328 1.20322 0.89068 0.80953 0.83009 1.90638 1.27139 1.52706 1.71707 1.42093 1.12541 1.60667 1.07384 1.17302 0.89293 1.18559 0.91154 1.24248 0.91967 1.06539 0.99623 1.78154 1.18278 1.26231 0.91316 1.44845 1.05294 1.35863 1.07088 1.20662 0.96043 1.47842 0.83907 0.84103 1.26894 0.95336 0.94619 1.04851 1.70377 1.03972 1.36282 1.34177 0.84566 0.78919 0.78444 0.74219 1.19147 1.20029 1.16612 1.22008 0.91645 1.13695 0.95203 0.93125 0.90251 0.92273 0.91556 0.90776 0.93479 0.89492 0.90996 0.90317 0.90248 0.91716 0.91712 0.74102 0.73938 0.80753 0.91205 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.04 71.98 0.51 -1.70 16 2 C -0.07 -0.98 0.94 -51.45 -0.05 -1.03 16 3 C -0.14 -1.62 8.15 71.98 0.59 -1.03 16 4 C -0.11 -1.16 5.90 31.67 0.19 -0.97 16 5 C -0.12 -1.32 6.91 31.88 0.22 -1.10 16 6 C -0.14 -2.36 6.52 31.67 0.21 -2.15 16 7 C 0.14 2.65 2.86 45.71 0.13 2.78 16 8 H 0.09 1.82 7.14 -2.38 -0.02 1.80 16 9 N -0.68 -16.28 4.50 -440.57 -1.98 -18.26 16 10 C 0.52 15.76 7.87 87.22 0.69 16.44 16 11 O -0.54 -17.54 16.15 -3.32 -0.05 -17.60 16 12 C 0.48 17.67 7.85 87.22 0.68 18.36 16 13 O -0.54 -22.36 13.62 -3.41 -0.05 -22.41 16 14 N -0.58 -21.92 5.45 -305.33 -1.66 -23.58 16 15 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 16 C -0.05 -2.60 10.85 85.44 0.93 -1.67 16 17 N -0.31 -18.38 10.41 -56.43 -0.59 -18.96 16 18 N -0.16 -9.02 3.73 -189.97 -0.71 -9.73 16 19 C -0.35 -18.59 10.24 84.02 0.86 -17.73 16 20 H 0.14 6.44 7.84 -2.91 -0.02 6.41 16 21 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 22 N -0.82 -46.78 11.84 21.66 0.26 -46.53 16 23 Si 1.02 38.20 29.56 68.60 2.03 40.23 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 27 C -0.07 -3.50 11.50 83.41 0.96 -2.54 16 28 H 0.05 0.88 7.71 -2.39 -0.02 0.86 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.88 6.92 -2.39 -0.02 0.87 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.67 7.84 -2.39 -0.02 0.65 16 35 H 0.07 0.76 7.84 -2.39 -0.02 0.74 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.22 8.05 -2.38 -0.02 1.20 16 40 H 0.42 9.53 5.23 -92.71 -0.49 9.05 16 41 H 0.42 13.47 8.29 -92.71 -0.77 12.70 16 42 H 0.18 9.19 5.92 -2.91 -0.02 9.17 16 43 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -71.21 361.73 3.67 -67.54 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.21 Total: 43.80 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.63 Total: 5.49 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -4.69 Total: -117.06 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.10 Total: -40.00 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -71.21 3.67 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746433614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.832 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds