Wall clock time and date at job start Tue Mar 31 2020 12:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86798 * 119.99794 * 2 1 4 4 H 1.48493 * 109.47026 * 239.99703 * 3 2 1 5 5 H 1.48503 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99620 * 3 2 1 7 7 C 1.38986 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 179.97438 * 7 2 1 9 9 N 1.37321 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06659 * 180.02562 * 9 7 2 11 11 C 1.35683 * 107.50421 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07715 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99618 * 180.02562 * 12 11 10 14 14 O 1.21308 * 120.00197 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.34776 * 120.00006 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99667 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00245 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.47050 * 180.02562 * 19 17 16 21 21 C 1.54259 * 110.03510 * 292.90673 * 20 19 17 22 22 C 1.54960 * 104.16340 * 217.13862 * 21 20 19 23 23 C 1.54881 * 102.77873 * 37.89024 * 22 21 20 24 24 C 1.53877 * 110.02914 * 175.69371 * 20 19 17 25 25 C 1.40646 * 107.83796 * 0.26484 * 11 10 9 26 26 N 1.30906 * 108.38849 * 359.54717 * 25 11 10 27 27 H 0.96991 * 120.00387 * 0.02562 * 1 2 3 28 28 H 1.07995 * 126.24792 * 0.03623 * 10 9 7 29 29 H 0.96994 * 120.00626 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 31 31 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 32 32 H 0.96998 * 120.00192 * 0.02562 * 16 15 13 33 33 H 1.08998 * 109.47789 * 300.00397 * 19 17 16 34 34 H 1.09001 * 109.47138 * 60.00989 * 19 17 16 35 35 H 1.08998 * 110.01473 * 54.30575 * 20 19 17 36 36 H 1.09003 * 110.48665 * 335.79117 * 21 20 19 37 37 H 1.09008 * 110.48197 * 98.42411 * 21 20 19 38 38 H 1.09000 * 110.71806 * 279.57736 * 22 21 20 39 39 H 1.09002 * 110.92382 * 156.30177 * 22 21 20 40 40 H 1.09002 * 110.48987 * 203.40589 * 23 22 21 41 41 H 1.09000 * 110.60305 * 80.81359 * 23 22 21 42 42 H 1.08998 * 110.03355 * 238.57143 * 24 20 19 43 43 H 1.09000 * 110.03407 * 359.97438 * 24 20 19 44 44 H 1.07995 * 125.80554 * 179.70960 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 -0.0006 6 1 3.1006 1.6965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3213 -2.3929 0.0005 10 6 1.8751 -3.6405 0.0015 11 6 0.8579 -4.5385 0.0006 12 7 0.9893 -5.9383 0.0006 13 6 -0.1099 -6.7182 -0.0010 14 8 -1.2125 -6.2124 -0.0029 15 6 0.0309 -8.2187 -0.0004 16 7 -1.2987 -8.8338 -0.0017 17 6 -1.4202 -10.1761 -0.0020 18 8 -0.4287 -10.8747 -0.0006 19 6 -2.7878 -10.8089 -0.0028 20 6 -2.6448 -12.3323 -0.0023 21 6 -2.0329 -12.8061 -1.3367 22 6 -2.7684 -14.1359 -1.6401 23 6 -4.2141 -13.8433 -1.1677 24 6 -4.0310 -12.9917 0.1055 25 6 -0.3511 -3.8199 -0.0073 26 7 -0.0715 -2.5411 -0.0010 27 1 -0.4850 0.8399 -0.0004 28 1 2.9302 -3.8708 0.0030 29 1 1.8709 -6.3427 0.0017 30 1 0.5777 -8.5326 -0.8894 31 1 0.5751 -8.5322 0.8905 32 1 -2.0916 -8.2751 -0.0032 33 1 -3.3339 -10.4953 0.8869 34 1 -3.3328 -10.4952 -0.8931 35 1 -2.0156 -12.6477 0.8300 36 1 -2.2234 -12.0767 -2.1240 37 1 -0.9622 -12.9780 -1.2256 38 1 -2.3338 -14.9560 -1.0685 39 1 -2.7479 -14.3573 -2.7072 40 1 -4.7344 -14.7722 -0.9339 41 1 -4.7594 -13.2823 -1.9267 42 1 -4.0742 -13.6278 0.9895 43 1 -4.8055 -12.2264 0.1579 44 1 -1.3417 -4.2501 -0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751397174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:35 Heat of formation + Delta-G solvation = -7.971360 kcal Electronic energy + Delta-G solvation = -25550.864338 eV Core-core repulsion = 21697.321221 eV Total energy + Delta-G solvation = -3853.543117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34554 -39.81404 -38.73655 -37.87218 -34.64136 -34.15220 -33.22538 -31.88247 -30.32998 -28.92421 -28.85302 -27.32318 -25.57853 -24.60687 -21.29355 -20.98331 -20.64878 -20.47390 -19.73046 -19.47084 -17.87600 -17.37976 -16.32182 -16.21769 -15.90846 -15.52535 -15.37378 -15.28016 -14.93878 -14.72264 -14.05203 -13.69070 -13.62101 -13.55986 -13.25557 -13.01475 -12.87380 -12.60962 -12.13966 -11.71389 -11.49713 -11.47842 -11.33183 -11.27188 -11.20469 -11.01333 -11.00452 -10.85165 -10.65792 -10.58824 -10.26275 -9.92763 -9.38966 -9.24129 -9.18891 -8.86463 -8.11462 -6.77609 -6.59610 -4.27461 2.53979 2.69322 2.89274 2.99148 3.03193 3.06713 3.61960 3.62621 3.85234 4.30495 4.35265 4.35678 4.46761 4.62352 4.79242 4.93884 4.98273 5.03938 5.08913 5.21073 5.28658 5.32297 5.34066 5.40128 5.44022 5.54016 5.58472 5.66868 5.78534 5.86311 6.05628 6.08678 6.18627 6.23920 6.25418 6.39105 6.82394 6.89420 7.01766 7.18083 7.43186 7.80571 8.03303 8.14901 8.21375 8.53150 8.72967 9.32645 9.61514 10.36299 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.050151 B = 0.001802 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.174661 B =15530.752198 C =15866.260858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.064 4.064 12 N -0.616 5.616 13 C 0.492 3.508 14 O -0.537 6.537 15 C 0.105 3.895 16 N -0.717 5.717 17 C 0.514 3.486 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.031 4.031 26 N -0.261 5.261 27 H 0.276 0.724 28 H 0.146 0.854 29 H 0.400 0.600 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -21.407 -0.889 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.233 4.233 11 C -0.170 4.170 12 N -0.258 5.258 13 C 0.277 3.723 14 O -0.415 6.415 15 C -0.023 4.023 16 N -0.372 5.372 17 C 0.301 3.699 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.207 4.207 26 N -0.092 5.092 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.526 -20.170 -0.879 20.691 hybrid contribution 0.981 0.046 0.023 0.983 sum -3.544 -20.124 -0.856 20.452 Atomic orbital electron populations 1.70200 1.06144 1.28176 1.35080 1.25649 0.95720 1.00307 0.95430 0.85884 0.79150 0.79560 0.79505 1.19135 1.20105 1.19127 1.19846 0.91680 0.80546 1.53515 0.86596 1.44554 1.04052 1.03321 1.38897 1.21271 0.96883 0.85344 1.19811 1.17255 0.94397 0.81010 1.24307 1.42370 1.08160 1.04698 1.70594 1.20230 0.84931 0.88364 0.78785 1.90589 1.25757 1.74505 1.50620 1.20969 0.86546 0.90424 1.04363 1.45781 1.09125 1.06953 1.75385 1.20723 0.92007 0.81556 0.75656 1.90686 1.39718 1.61993 1.49631 1.21853 0.94442 0.96511 1.04610 1.21539 0.96369 0.92169 0.99444 1.22410 1.00409 0.96274 0.96055 1.22538 0.95382 0.97927 1.00680 1.22357 0.97072 0.99485 0.97367 1.22242 0.96579 0.99023 0.98190 1.24094 0.97965 0.90759 1.07878 1.78265 0.90128 1.15052 1.25752 0.91356 0.83605 0.76657 0.88748 0.88748 0.74918 0.88743 0.88670 0.90210 0.92040 0.90758 0.91668 0.91818 0.91946 0.91704 0.91721 0.91557 0.80741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.27 11.81 55.49 0.66 -20.62 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.67 29.55 -169.99 -5.02 13.65 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 9 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.07 16 11 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 12 N -0.62 -10.28 5.47 -10.00 -0.05 -10.33 16 13 C 0.49 7.86 7.87 -10.98 -0.09 7.78 16 14 O -0.54 -10.39 12.82 5.53 0.07 -10.32 16 15 C 0.10 1.26 6.15 -5.19 -0.03 1.23 16 16 N -0.72 -8.35 5.53 -61.47 -0.34 -8.69 16 17 C 0.51 5.86 7.61 -10.99 -0.08 5.78 16 18 O -0.54 -7.70 14.78 5.55 0.08 -7.61 16 19 C -0.13 -1.10 4.83 -27.88 -0.13 -1.24 16 20 C -0.08 -0.64 2.55 -89.50 -0.23 -0.87 16 21 C -0.11 -1.02 5.40 -25.04 -0.14 -1.15 16 22 C -0.13 -0.94 6.91 -24.70 -0.17 -1.11 16 23 C -0.13 -0.82 6.83 -25.07 -0.17 -0.99 16 24 C -0.12 -0.83 6.46 -25.61 -0.17 -0.99 16 25 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 26 N -0.26 -7.47 10.40 30.80 0.32 -7.15 16 27 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 29 H 0.40 5.04 8.82 -40.82 -0.36 4.68 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 4.73 7.44 -40.82 -0.30 4.43 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.67 8.02 -51.93 -0.42 0.26 16 35 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 36 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.07 0.79 7.63 -51.92 -0.40 0.39 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.40 7.67 -51.93 -0.40 0.00 16 44 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -33.56 365.56 -7.58 -41.14 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.35 Total: 12.46 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.41 Total: -4.17 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.54 Total: -50.65 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.15 Total: -17.93 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.56 -7.58 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751397174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.166 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds