Wall clock time and date at job start Tue Mar 31 2020 12:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86798 * 119.99794 * 2 1 4 4 H 1.48493 * 109.47026 * 239.99703 * 3 2 1 5 5 H 1.48503 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99620 * 3 2 1 7 7 C 1.38986 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 179.97438 * 7 2 1 9 9 N 1.37321 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06659 * 180.02562 * 9 7 2 11 11 C 1.35683 * 107.50421 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07715 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99618 * 180.02562 * 12 11 10 14 14 O 1.21308 * 120.00197 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.34776 * 120.00006 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99667 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00245 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.47050 * 180.02562 * 19 17 16 21 21 C 1.54259 * 110.03510 * 292.90673 * 20 19 17 22 22 C 1.54960 * 104.16340 * 217.13862 * 21 20 19 23 23 C 1.54881 * 102.77873 * 37.89024 * 22 21 20 24 24 C 1.53877 * 110.02914 * 175.69371 * 20 19 17 25 25 C 1.40646 * 107.83796 * 0.26484 * 11 10 9 26 26 N 1.30906 * 108.38849 * 359.54717 * 25 11 10 27 27 H 0.96991 * 120.00387 * 0.02562 * 1 2 3 28 28 H 1.07995 * 126.24792 * 0.03623 * 10 9 7 29 29 H 0.96994 * 120.00626 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 31 31 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 32 32 H 0.96998 * 120.00192 * 0.02562 * 16 15 13 33 33 H 1.08998 * 109.47789 * 300.00397 * 19 17 16 34 34 H 1.09001 * 109.47138 * 60.00989 * 19 17 16 35 35 H 1.08998 * 110.01473 * 54.30575 * 20 19 17 36 36 H 1.09003 * 110.48665 * 335.79117 * 21 20 19 37 37 H 1.09008 * 110.48197 * 98.42411 * 21 20 19 38 38 H 1.09000 * 110.71806 * 279.57736 * 22 21 20 39 39 H 1.09002 * 110.92382 * 156.30177 * 22 21 20 40 40 H 1.09002 * 110.48987 * 203.40589 * 23 22 21 41 41 H 1.09000 * 110.60305 * 80.81359 * 23 22 21 42 42 H 1.08998 * 110.03355 * 238.57143 * 24 20 19 43 43 H 1.09000 * 110.03407 * 359.97438 * 24 20 19 44 44 H 1.07995 * 125.80554 * 179.70960 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 -0.0006 6 1 3.1006 1.6965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3213 -2.3929 0.0005 10 6 1.8751 -3.6405 0.0015 11 6 0.8579 -4.5385 0.0006 12 7 0.9893 -5.9383 0.0006 13 6 -0.1099 -6.7182 -0.0010 14 8 -1.2125 -6.2124 -0.0029 15 6 0.0309 -8.2187 -0.0004 16 7 -1.2987 -8.8338 -0.0017 17 6 -1.4202 -10.1761 -0.0020 18 8 -0.4287 -10.8747 -0.0006 19 6 -2.7878 -10.8089 -0.0028 20 6 -2.6448 -12.3323 -0.0023 21 6 -2.0329 -12.8061 -1.3367 22 6 -2.7684 -14.1359 -1.6401 23 6 -4.2141 -13.8433 -1.1677 24 6 -4.0310 -12.9917 0.1055 25 6 -0.3511 -3.8199 -0.0073 26 7 -0.0715 -2.5411 -0.0010 27 1 -0.4850 0.8399 -0.0004 28 1 2.9302 -3.8708 0.0030 29 1 1.8709 -6.3427 0.0017 30 1 0.5777 -8.5326 -0.8894 31 1 0.5751 -8.5322 0.8905 32 1 -2.0916 -8.2751 -0.0032 33 1 -3.3339 -10.4953 0.8869 34 1 -3.3328 -10.4952 -0.8931 35 1 -2.0156 -12.6477 0.8300 36 1 -2.2234 -12.0767 -2.1240 37 1 -0.9622 -12.9780 -1.2256 38 1 -2.3338 -14.9560 -1.0685 39 1 -2.7479 -14.3573 -2.7072 40 1 -4.7344 -14.7722 -0.9339 41 1 -4.7594 -13.2823 -1.9267 42 1 -4.0742 -13.6278 0.9895 43 1 -4.8055 -12.2264 0.1579 44 1 -1.3417 -4.2501 -0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751397174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:34 Heat of formation + Delta-G solvation = -31.221117 kcal Electronic energy + Delta-G solvation = -25551.872523 eV Core-core repulsion = 21697.321221 eV Total energy + Delta-G solvation = -3854.551302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78734 -41.06501 -40.13316 -38.63468 -36.06760 -35.37917 -34.99459 -32.60169 -32.23993 -30.29688 -29.48663 -28.72061 -26.84682 -25.99405 -22.95197 -22.14533 -21.64971 -21.43204 -21.20305 -20.39217 -19.37735 -18.67714 -17.54561 -17.35724 -17.17106 -16.96359 -16.57382 -16.33626 -15.99805 -15.69806 -15.53316 -15.19119 -14.88562 -14.66534 -14.32306 -14.15297 -14.07224 -13.59937 -13.47719 -13.30401 -12.90931 -12.87337 -12.85206 -12.13939 -12.09611 -11.90029 -11.86147 -11.80406 -11.62938 -11.47847 -11.25856 -11.01428 -10.89537 -10.84490 -10.76072 -10.17480 -10.10141 -8.54944 -8.46978 -6.24477 1.18394 1.40042 1.48093 1.56217 1.66479 1.80803 1.85656 2.15201 2.50184 2.50452 2.89876 3.09060 3.63513 3.73828 3.76971 3.85524 4.06201 4.33768 4.37226 4.38929 4.44733 4.46988 4.59889 4.62630 4.67891 4.77359 4.87612 4.93876 4.99950 5.00591 5.04863 5.14175 5.16967 5.28138 5.29309 5.32457 5.42403 5.43916 5.53030 5.59031 5.95407 6.30234 6.51191 6.66913 6.73662 7.22212 7.29206 7.45884 7.68003 8.52200 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.050151 B = 0.001802 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.174661 B =15530.752198 C =15866.260858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.356 4.356 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.079 4.079 11 C -0.047 4.047 12 N -0.610 5.610 13 C 0.496 3.504 14 O -0.569 6.569 15 C 0.116 3.884 16 N -0.719 5.719 17 C 0.513 3.487 18 O -0.572 6.572 19 C -0.130 4.130 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.056 4.056 26 N -0.311 5.311 27 H 0.276 0.724 28 H 0.188 0.812 29 H 0.423 0.577 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.415 0.585 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -22.568 -0.888 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.487 4.487 8 H 0.158 0.842 9 N 0.063 4.937 10 C -0.229 4.229 11 C -0.154 4.154 12 N -0.255 5.255 13 C 0.283 3.717 14 O -0.449 6.449 15 C -0.011 4.011 16 N -0.374 5.374 17 C 0.302 3.698 18 O -0.452 6.452 19 C -0.170 4.170 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.232 4.232 26 N -0.143 5.143 27 H 0.086 0.914 28 H 0.205 0.795 29 H 0.260 0.740 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.253 0.747 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.506 -21.388 -0.878 21.691 hybrid contribution 0.668 0.204 0.019 0.698 sum -2.839 -21.184 -0.860 21.390 Atomic orbital electron populations 1.70382 1.08376 1.29166 1.37327 1.26864 0.96475 1.04304 0.94139 0.84661 0.77559 0.73809 0.80245 1.17776 1.20315 1.17763 1.20578 0.92973 0.80943 1.54161 0.84204 1.44831 1.03655 1.04804 1.40444 1.22023 0.98901 0.84213 1.17798 1.17311 0.92855 0.83552 1.21635 1.42303 1.09880 1.02424 1.70861 1.20941 0.84017 0.89896 0.76826 1.90584 1.27194 1.75550 1.51556 1.20936 0.87310 0.86876 1.05983 1.45864 1.08985 1.07201 1.75373 1.21253 0.92881 0.81089 0.74593 1.90679 1.40980 1.62480 1.51041 1.21916 0.92750 0.96056 1.06236 1.21521 0.97154 0.92433 0.98396 1.22378 0.99265 0.97220 0.96430 1.22538 0.95860 0.96994 1.01057 1.22366 0.96420 1.00006 0.97318 1.22227 0.95618 0.99327 0.98509 1.24203 0.99082 0.90846 1.09041 1.78154 0.92009 1.16725 1.27446 0.91390 0.79511 0.73973 0.87027 0.86998 0.74731 0.86866 0.87095 0.91806 0.92335 0.93026 0.91711 0.91363 0.90969 0.91267 0.91275 0.90374 0.81183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.22 11.81 21.66 0.26 -46.96 16 2 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 3 Si 1.02 38.16 29.55 68.60 2.03 40.18 16 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.36 -18.61 10.25 84.01 0.86 -17.75 16 8 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 9 N -0.17 -9.21 3.74 -190.01 -0.71 -9.92 16 10 C -0.08 -3.54 11.49 83.38 0.96 -2.58 16 11 C -0.05 -2.08 6.90 37.73 0.26 -1.82 16 12 N -0.61 -19.18 5.47 -303.92 -1.66 -20.84 16 13 C 0.50 15.13 7.87 87.66 0.69 15.82 16 14 O -0.57 -21.87 12.82 -3.12 -0.04 -21.91 16 15 C 0.12 2.54 6.15 85.64 0.53 3.07 16 16 N -0.72 -15.54 5.53 -466.79 -2.58 -18.12 16 17 C 0.51 10.96 7.61 87.66 0.67 11.63 16 18 O -0.57 -15.66 14.78 -3.05 -0.05 -15.70 16 19 C -0.13 -1.90 4.83 29.85 0.14 -1.76 16 20 C -0.08 -1.18 2.55 -10.07 -0.03 -1.21 16 21 C -0.12 -1.99 5.40 31.69 0.17 -1.82 16 22 C -0.13 -1.72 6.91 31.91 0.22 -1.50 16 23 C -0.12 -1.37 6.83 31.67 0.22 -1.16 16 24 C -0.12 -1.36 6.46 31.32 0.20 -1.16 16 25 C -0.06 -2.97 10.85 85.42 0.93 -2.04 16 26 N -0.31 -18.46 10.40 -56.47 -0.59 -19.05 16 27 H 0.28 14.58 8.31 -92.72 -0.77 13.81 16 28 H 0.19 6.55 8.06 -2.91 -0.02 6.53 16 29 H 0.42 9.38 8.82 -92.71 -0.82 8.57 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.41 8.94 7.44 -92.71 -0.69 8.25 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.31 8.02 -2.39 -0.02 1.29 16 35 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 36 H 0.06 1.02 7.77 -2.39 -0.02 1.00 16 37 H 0.05 1.11 7.63 -2.38 -0.02 1.09 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.72 7.67 -2.39 -0.02 0.71 16 44 H 0.17 8.91 5.92 -2.91 -0.02 8.89 16 Total: -1.00 -76.05 365.56 2.48 -73.57 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.47 Total: 40.88 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.29 Total: -2.13 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.28 Total: -114.90 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.08 Total: -37.62 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -76.05 2.48 -73.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751397174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.349 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds