Wall clock time and date at job start Tue Mar 31 2020 12:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00223 * 2 1 4 4 O 1.20823 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47402 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47022 * 179.97438 * 6 5 3 8 8 C 1.38283 * 119.92526 * 90.00054 * 7 6 5 9 9 C 1.38101 * 120.07597 * 179.97438 * 8 7 6 10 10 C 1.38912 * 119.92565 * 0.02562 * 9 8 7 11 11 N 1.39673 * 120.07315 * 179.97438 * 10 9 8 12 12 C 1.46506 * 119.99605 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46928 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00169 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47324 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47196 * 59.99759 * 21 19 17 23 23 H 1.48494 * 109.47285 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46819 * 300.00256 * 21 19 17 25 25 C 1.38914 * 119.84917 * 0.25534 * 10 9 8 26 26 C 1.38106 * 119.92380 * 359.48549 * 25 10 9 27 27 H 1.09006 * 109.46725 * 300.00273 * 1 2 3 28 28 H 1.08993 * 109.47222 * 59.99738 * 1 2 3 29 29 H 1.08994 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47185 * 59.99839 * 5 3 2 31 31 H 1.08999 * 109.47130 * 299.99831 * 5 3 2 32 32 H 1.09004 * 109.46832 * 59.99929 * 6 5 3 33 33 H 1.08999 * 109.47090 * 300.00162 * 6 5 3 34 34 H 1.08009 * 119.96048 * 0.02562 * 8 7 6 35 35 H 1.08005 * 120.03673 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00315 * 0.02562 * 11 10 9 37 37 H 1.09004 * 109.47073 * 299.99891 * 12 11 10 38 38 H 1.09000 * 109.47212 * 59.99974 * 12 11 10 39 39 H 0.96996 * 119.99844 * 0.02562 * 15 13 12 40 40 H 1.09004 * 109.47042 * 300.00295 * 16 15 13 41 41 H 1.09004 * 109.46923 * 59.99881 * 16 15 13 42 42 H 0.97005 * 120.00032 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.03713 * 179.72784 * 25 10 9 44 44 H 1.07994 * 119.96460 * 180.25714 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 5.5052 2.8207 0.0010 8 6 6.1951 2.8559 -1.1969 9 6 7.5742 2.9286 -1.1994 10 6 8.2684 2.9659 0.0033 11 7 9.6632 3.0389 0.0043 12 6 10.3937 3.0776 1.2737 13 6 11.8735 3.1556 0.9995 14 8 12.2781 3.1763 -0.1437 15 7 12.7472 3.2023 2.0246 16 6 14.1858 3.2776 1.7581 17 6 14.9372 3.3175 3.0637 18 1 14.3972 3.2900 3.9986 19 6 16.3141 3.3891 3.0649 20 7 16.9717 3.4231 1.9264 21 14 17.2456 3.4379 4.6833 22 1 16.9496 2.2086 5.4620 23 1 18.7037 3.5143 4.4132 24 1 16.8236 4.6303 5.4615 25 6 7.5725 2.9245 1.2048 26 6 6.1931 2.8573 1.2001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9565 0.7804 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 3.6101 3.2367 0.8893 33 1 3.6109 3.2355 -0.8906 34 1 5.6547 2.8273 -2.1316 35 1 8.1125 2.9556 -2.1354 36 1 10.1482 3.0640 -0.8353 37 1 10.0837 3.9528 1.8447 38 1 10.1768 2.1753 1.8454 39 1 12.4236 3.1854 2.9388 40 1 14.4959 2.4021 1.1874 41 1 14.4026 4.1797 1.1859 42 1 17.9405 3.4738 1.9272 43 1 8.1094 2.9489 2.1416 44 1 5.6512 2.8293 2.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759777830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:19 Heat of formation + Delta-G solvation = -111.260867 kcal Electronic energy + Delta-G solvation = -24612.082114 eV Core-core repulsion = 20721.767277 eV Total energy + Delta-G solvation = -3890.314837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85108 -39.78071 -38.90310 -37.02953 -35.87974 -34.34742 -33.34668 -32.44514 -31.01290 -29.91525 -28.44346 -27.53166 -26.15550 -24.20807 -23.06284 -22.29633 -21.31042 -20.55707 -19.87952 -18.09942 -17.95648 -17.03869 -16.93670 -16.79132 -16.15781 -15.43189 -15.36985 -15.30106 -15.13507 -14.69686 -14.19412 -14.07196 -13.75908 -13.58808 -13.54337 -13.36673 -13.07194 -12.99975 -12.64908 -12.47918 -12.16125 -12.02935 -11.70813 -11.52641 -11.45730 -11.21784 -11.07011 -10.92744 -10.89361 -10.85357 -10.39280 -10.01084 -9.50341 -9.31698 -8.98217 -8.82231 -8.05010 -7.37614 -6.23249 -4.31068 1.39237 1.47996 1.83312 2.36968 3.11992 3.21316 3.24528 3.27150 3.30902 3.78742 4.03025 4.30635 4.33113 4.60839 4.67685 4.72074 4.75159 4.87039 4.89023 5.00105 5.12777 5.13036 5.19050 5.21657 5.31658 5.35285 5.38937 5.41007 5.64530 5.71880 5.82535 5.97489 6.00514 6.27779 6.35077 6.61849 6.79106 7.15439 7.23820 7.31974 7.36119 7.40637 7.56375 7.77794 7.88443 8.45138 8.65056 8.90167 9.35583 10.86804 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033897 B = 0.001569 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.844303 B =17845.881815 C =18319.339180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.509 6.509 5 C -0.109 4.109 6 C -0.056 4.056 7 C -0.158 4.158 8 C -0.063 4.063 9 C -0.195 4.195 10 C 0.226 3.774 11 N -0.730 5.730 12 C 0.103 3.897 13 C 0.493 3.507 14 O -0.553 6.553 15 N -0.705 5.705 16 C 0.249 3.751 17 C -0.547 4.547 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.201 4.201 26 C -0.062 4.062 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.393 0.607 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.122 0.878 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.681 -5.314 -2.305 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.397 6.397 5 C -0.147 4.147 6 C -0.094 4.094 7 C -0.160 4.160 8 C -0.082 4.082 9 C -0.218 4.218 10 C 0.121 3.879 11 N -0.362 5.362 12 C -0.026 4.026 13 C 0.276 3.724 14 O -0.433 6.433 15 N -0.353 5.353 16 C 0.129 3.871 17 C -0.585 4.585 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.224 4.224 26 C -0.081 4.081 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.250 0.750 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.140 0.860 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.254 -4.986 -3.012 29.828 hybrid contribution 0.516 0.060 1.016 1.141 sum -28.738 -4.926 -1.996 29.226 Atomic orbital electron populations 1.23265 0.76376 1.03707 1.02561 1.86527 1.23470 1.33758 1.84123 1.24041 0.92492 0.81201 0.72009 1.90676 1.67387 1.36346 1.45255 1.21511 0.86466 1.00394 1.06300 1.20223 0.91765 0.93312 1.04060 1.19384 0.94328 1.08968 0.93317 1.20710 0.93205 0.97005 0.97238 1.20583 0.94349 1.10523 0.96349 1.17877 0.83242 0.92717 0.94045 1.44500 1.02519 1.80761 1.08378 1.21118 0.90720 1.02992 0.87736 1.20346 0.87839 0.77962 0.86206 1.90657 1.79691 1.51424 1.21511 1.46417 1.09532 1.71439 1.07958 1.19159 0.72847 0.97843 0.97252 1.21168 0.91836 1.53558 0.91965 0.91834 1.24950 0.97448 0.94554 0.96975 1.69961 1.08353 1.48430 1.25448 0.86449 0.78659 0.78731 0.82936 1.20019 1.21021 1.20022 1.20657 0.94387 1.10943 0.96444 1.20737 0.93337 0.96840 0.97204 0.91891 0.91895 0.88104 0.87456 0.87432 0.90525 0.90544 0.86325 0.86127 0.74966 0.89623 0.89607 0.77388 0.95358 0.95355 0.92302 0.86033 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.84 10.56 -39.24 -0.41 -3.25 16 3 C 0.46 3.91 7.96 36.01 0.29 4.20 16 4 O -0.51 -5.72 15.73 -18.75 -0.29 -6.02 16 5 C -0.11 -0.71 5.79 -27.88 -0.16 -0.87 16 6 C -0.06 -0.43 4.63 -27.88 -0.13 -0.56 16 7 C -0.16 -1.42 5.14 -104.59 -0.54 -1.96 16 8 C -0.06 -0.59 9.69 -39.62 -0.38 -0.98 16 9 C -0.20 -2.14 9.90 -39.38 -0.39 -2.53 16 10 C 0.23 2.72 6.65 -83.79 -0.56 2.16 16 11 N -0.73 -9.76 5.70 -59.80 -0.34 -10.11 16 12 C 0.10 1.35 5.39 -5.19 -0.03 1.32 16 13 C 0.49 9.08 7.90 -10.99 -0.09 8.99 16 14 O -0.55 -12.41 15.67 5.56 0.09 -12.32 16 15 N -0.71 -13.86 5.55 -61.47 -0.34 -14.20 16 16 C 0.25 6.37 5.43 -5.20 -0.03 6.34 16 17 C -0.55 -14.39 9.28 -34.44 -0.32 -14.71 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.55 13.29 55.43 0.74 -24.82 16 21 Si 0.91 20.38 29.54 -169.99 -5.02 15.35 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 C -0.20 -2.15 9.31 -39.38 -0.37 -2.52 16 26 C -0.06 -0.58 9.69 -39.61 -0.38 -0.97 16 27 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.41 6.00 7.45 -40.82 -0.30 5.69 16 37 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 38 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.39 6.44 8.32 -40.82 -0.34 6.11 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 1.16 6.73 -52.49 -0.35 0.81 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -33.07 381.67 -8.37 -41.44 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.42 Total: 7.33 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.12 Total: 0.84 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.05 Total: -49.12 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.62 Total: -21.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.07 -8.37 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759777830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.823 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds