Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00223 * 2 1 4 4 O 1.20823 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47402 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47022 * 179.97438 * 6 5 3 8 8 C 1.38283 * 119.92526 * 90.00054 * 7 6 5 9 9 C 1.38101 * 120.07597 * 179.97438 * 8 7 6 10 10 C 1.38912 * 119.92565 * 0.02562 * 9 8 7 11 11 N 1.39673 * 120.07315 * 179.97438 * 10 9 8 12 12 C 1.46506 * 119.99605 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46928 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00169 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47324 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47196 * 59.99759 * 21 19 17 23 23 H 1.48494 * 109.47285 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46819 * 300.00256 * 21 19 17 25 25 C 1.38914 * 119.84917 * 0.25534 * 10 9 8 26 26 C 1.38106 * 119.92380 * 359.48549 * 25 10 9 27 27 H 1.09006 * 109.46725 * 300.00273 * 1 2 3 28 28 H 1.08993 * 109.47222 * 59.99738 * 1 2 3 29 29 H 1.08994 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47185 * 59.99839 * 5 3 2 31 31 H 1.08999 * 109.47130 * 299.99831 * 5 3 2 32 32 H 1.09004 * 109.46832 * 59.99929 * 6 5 3 33 33 H 1.08999 * 109.47090 * 300.00162 * 6 5 3 34 34 H 1.08009 * 119.96048 * 0.02562 * 8 7 6 35 35 H 1.08005 * 120.03673 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00315 * 0.02562 * 11 10 9 37 37 H 1.09004 * 109.47073 * 299.99891 * 12 11 10 38 38 H 1.09000 * 109.47212 * 59.99974 * 12 11 10 39 39 H 0.96996 * 119.99844 * 0.02562 * 15 13 12 40 40 H 1.09004 * 109.47042 * 300.00295 * 16 15 13 41 41 H 1.09004 * 109.46923 * 59.99881 * 16 15 13 42 42 H 0.97005 * 120.00032 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.03713 * 179.72784 * 25 10 9 44 44 H 1.07994 * 119.96460 * 180.25714 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 5.5052 2.8207 0.0010 8 6 6.1951 2.8559 -1.1969 9 6 7.5742 2.9286 -1.1994 10 6 8.2684 2.9659 0.0033 11 7 9.6632 3.0389 0.0043 12 6 10.3937 3.0776 1.2737 13 6 11.8735 3.1556 0.9995 14 8 12.2781 3.1763 -0.1437 15 7 12.7472 3.2023 2.0246 16 6 14.1858 3.2776 1.7581 17 6 14.9372 3.3175 3.0637 18 1 14.3972 3.2900 3.9986 19 6 16.3141 3.3891 3.0649 20 7 16.9717 3.4231 1.9264 21 14 17.2456 3.4379 4.6833 22 1 16.9496 2.2086 5.4620 23 1 18.7037 3.5143 4.4132 24 1 16.8236 4.6303 5.4615 25 6 7.5725 2.9245 1.2048 26 6 6.1931 2.8573 1.2001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9565 0.7804 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 3.6101 3.2367 0.8893 33 1 3.6109 3.2355 -0.8906 34 1 5.6547 2.8273 -2.1316 35 1 8.1125 2.9556 -2.1354 36 1 10.1482 3.0640 -0.8353 37 1 10.0837 3.9528 1.8447 38 1 10.1768 2.1753 1.8454 39 1 12.4236 3.1854 2.9388 40 1 14.4959 2.4021 1.1874 41 1 14.4026 4.1797 1.1859 42 1 17.9405 3.4738 1.9272 43 1 8.1094 2.9489 2.1416 44 1 5.6512 2.8293 2.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759777830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = -133.074403 kcal Electronic energy + Delta-G solvation = -24613.028020 eV Core-core repulsion = 20721.767277 eV Total energy + Delta-G solvation = -3891.260743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48828 -40.89999 -40.10709 -37.68105 -36.82734 -36.13087 -34.41541 -34.09289 -31.77599 -30.86076 -29.64347 -28.51814 -27.32068 -25.04641 -24.49898 -23.45885 -22.04997 -21.48436 -21.17368 -19.33189 -18.68365 -18.26038 -17.67219 -17.51701 -17.44906 -16.90809 -16.72080 -16.69337 -16.02016 -15.81994 -15.18459 -14.96302 -14.81885 -14.60173 -14.40131 -14.22058 -14.10685 -13.96225 -13.84251 -13.63708 -13.58611 -13.01221 -12.96066 -12.71584 -12.66290 -12.25251 -12.17630 -12.11846 -11.78532 -11.58844 -11.53030 -11.52160 -10.93615 -10.85549 -10.80000 -9.90198 -9.73731 -8.29725 -8.24779 -6.46457 0.63275 0.70929 1.20282 1.44181 1.47702 1.55939 1.62390 1.84576 2.09981 2.39561 2.77099 3.02421 3.05671 3.76258 3.81948 3.99154 4.12272 4.20664 4.22166 4.30037 4.33798 4.35105 4.40452 4.41087 4.65245 4.66195 4.68691 4.74912 4.89096 5.03473 5.08447 5.21764 5.21917 5.25295 5.42900 5.43748 5.49549 5.58603 5.63877 5.82707 5.88794 6.03409 6.41286 6.63521 6.72807 6.74941 6.84833 7.21686 7.39169 8.82078 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033897 B = 0.001569 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.844303 B =17845.881815 C =18319.339180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.104 4.104 6 C -0.051 4.051 7 C -0.151 4.151 8 C -0.066 4.066 9 C -0.208 4.208 10 C 0.205 3.795 11 N -0.744 5.744 12 C 0.120 3.880 13 C 0.491 3.509 14 O -0.598 6.598 15 N -0.700 5.700 16 C 0.265 3.735 17 C -0.558 4.558 18 H 0.086 0.914 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.287 1.287 24 H -0.262 1.262 25 C -0.207 4.207 26 C -0.065 4.065 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.402 0.598 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.412 0.588 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.268 0.732 43 H 0.135 0.865 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.627 -5.979 0.001 32.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.306 3.694 4 O -0.432 6.432 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.153 4.153 8 C -0.085 4.085 9 C -0.231 4.231 10 C 0.102 3.898 11 N -0.375 5.375 12 C -0.007 4.007 13 C 0.278 3.722 14 O -0.480 6.480 15 N -0.350 5.350 16 C 0.143 3.857 17 C -0.596 4.596 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.213 1.213 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.083 4.083 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.137 0.863 36 H 0.239 0.761 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.249 0.751 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.077 0.923 43 H 0.152 0.848 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -31.278 -5.669 -0.668 31.795 hybrid contribution 0.971 0.241 0.208 1.022 sum -30.307 -5.428 -0.460 30.793 Atomic orbital electron populations 1.23508 0.75135 1.05517 1.02417 1.86520 1.24800 1.33363 1.83750 1.24392 0.93159 0.80885 0.70947 1.90665 1.68233 1.37353 1.46976 1.21521 0.85146 0.99747 1.07695 1.20157 0.90685 0.94182 1.03837 1.19563 0.94961 1.07622 0.93140 1.20941 0.92696 0.96478 0.98383 1.20746 0.95137 1.10951 0.96273 1.18072 0.82527 0.94184 0.95032 1.44515 1.03150 1.82079 1.07781 1.21070 0.85951 1.05412 0.88283 1.21300 0.90030 0.75927 0.84991 1.90638 1.80986 1.52935 1.23444 1.46096 1.07401 1.71954 1.09537 1.18575 0.76439 0.94226 0.96502 1.21601 0.92375 1.52870 0.92719 0.89555 1.26049 0.98700 0.93835 1.00911 1.70128 1.08695 1.49773 1.28340 0.85215 0.76620 0.79514 0.77935 1.18606 1.21273 1.18661 1.20878 0.95043 1.10644 0.96381 1.21023 0.93015 0.96046 0.98262 0.92048 0.92091 0.85381 0.86086 0.85862 0.90690 0.90951 0.84591 0.86252 0.76116 0.87032 0.86848 0.75126 0.99260 0.99309 0.92272 0.84767 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.16 10.56 -51.35 -0.54 -5.70 16 3 C 0.46 7.16 7.96 71.24 0.57 7.72 16 4 O -0.54 -11.72 15.73 21.97 0.35 -11.38 16 5 C -0.10 -1.10 5.79 29.85 0.17 -0.93 16 6 C -0.05 -0.67 4.63 29.85 0.14 -0.53 16 7 C -0.15 -2.36 5.14 -19.84 -0.10 -2.46 16 8 C -0.07 -1.14 9.69 22.25 0.22 -0.93 16 9 C -0.21 -4.40 9.90 22.40 0.22 -4.18 16 10 C 0.20 4.67 6.65 38.22 0.25 4.92 16 11 N -0.74 -19.42 5.70 -343.11 -1.96 -21.37 16 12 C 0.12 2.95 5.39 85.63 0.46 3.42 16 13 C 0.49 18.17 7.90 87.66 0.69 18.86 16 14 O -0.60 -27.91 15.67 -3.04 -0.05 -27.96 16 15 N -0.70 -27.54 5.55 -466.78 -2.59 -30.13 16 16 C 0.27 14.08 5.43 85.63 0.46 14.54 16 17 C -0.56 -29.40 9.28 25.60 0.24 -29.16 16 18 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 21 Si 0.98 41.30 29.54 68.60 2.03 43.33 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 C -0.21 -3.91 9.31 22.40 0.21 -3.70 16 26 C -0.06 -1.03 9.69 22.25 0.22 -0.82 16 27 H 0.06 0.59 8.13 -2.38 -0.02 0.57 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.04 8.04 -2.39 -0.02 1.02 16 33 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.40 12.01 7.45 -92.71 -0.69 11.32 16 37 H 0.11 2.21 7.96 -2.38 -0.02 2.19 16 38 H 0.11 2.20 7.94 -2.39 -0.02 2.18 16 39 H 0.41 12.88 8.32 -92.71 -0.77 12.11 16 40 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 43 H 0.13 2.11 6.73 -2.91 -0.02 2.09 16 44 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -74.48 381.67 2.49 -71.99 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.44 Total: 27.28 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.41 Total: 8.93 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.26 Total: -106.48 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.24 Total: -45.04 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -74.48 2.49 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759777830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.086 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds