Wall clock time and date at job start Tue Mar 31 2020 12:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99614 * 2 1 4 4 H 1.48500 * 109.46880 * 270.00170 * 3 2 1 5 5 H 1.48493 * 109.47045 * 30.00258 * 3 2 1 6 6 H 1.48497 * 109.46969 * 150.00337 * 3 2 1 7 7 C 1.37879 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99287 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00332 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47459 * 180.02562 * 10 9 7 12 12 O 1.45191 * 109.47594 * 179.97438 * 11 10 9 13 13 C 1.34223 * 117.00347 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00417 * 180.02562 * 13 12 11 16 16 C 1.53008 * 112.85009 * 309.66548 * 15 13 12 17 17 C 1.50699 * 109.46778 * 50.32863 * 16 15 13 18 18 C 1.38265 * 119.99210 * 269.98076 * 17 16 15 19 19 C 1.38223 * 120.05406 * 179.97438 * 18 17 16 20 20 C 1.38223 * 120.02411 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97448 * 359.74760 * 20 19 18 22 22 F 1.35099 * 120.02356 * 180.27548 * 21 20 19 23 23 C 1.38183 * 119.98467 * 90.00809 * 17 16 15 24 24 C 1.53784 * 113.61766 * 80.86018 * 15 13 12 25 25 C 1.53951 * 87.01828 * 89.23292 * 24 15 13 26 26 C 1.53773 * 87.11543 * 25.36510 * 25 24 15 27 27 H 0.97001 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46801 * 60.00059 * 9 7 2 29 29 H 1.09000 * 109.47012 * 300.00357 * 9 7 2 30 30 H 1.09002 * 109.47296 * 59.99817 * 10 9 7 31 31 H 1.09000 * 109.47212 * 299.99963 * 10 9 7 32 32 H 1.09002 * 109.47162 * 59.99557 * 11 10 9 33 33 H 1.09000 * 109.46733 * 300.00078 * 11 10 9 34 34 H 1.09001 * 109.46647 * 290.33368 * 16 15 13 35 35 H 1.08992 * 109.47295 * 170.33039 * 16 15 13 36 36 H 1.08004 * 119.96758 * 359.97438 * 18 17 16 37 37 H 1.08000 * 119.98736 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.01045 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.01017 * 359.97438 * 23 17 16 40 40 H 1.09004 * 113.61629 * 203.75316 * 24 15 13 41 41 H 1.09001 * 113.61162 * 334.65326 * 24 15 13 42 42 H 1.09004 * 113.53493 * 270.80895 * 25 24 15 43 43 H 1.08997 * 113.74376 * 139.94618 * 25 24 15 44 44 H 1.08996 * 113.61537 * 220.09250 * 26 25 24 45 45 H 1.09002 * 113.61450 * 89.18585 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6363 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 8 6.0357 -4.0052 -0.0027 13 6 7.3663 -4.1811 -0.0022 14 8 8.1023 -3.2228 -0.0018 15 6 7.9424 -5.5736 -0.0033 16 6 7.3374 -6.4677 1.0810 17 6 5.8338 -6.3962 1.0096 18 6 5.1517 -5.4419 1.7416 19 6 3.7726 -5.3748 1.6767 20 6 3.0737 -6.2623 0.8801 21 6 3.7559 -7.2152 0.1431 22 9 3.0742 -8.0796 -0.6401 23 6 5.1372 -7.2849 0.2130 24 6 7.9719 -6.2271 -1.3950 25 6 9.3645 -5.5957 -1.5736 26 6 9.4795 -5.6044 -0.0402 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6799 -0.8911 30 1 3.6579 -3.1496 -0.8925 31 1 3.6587 -3.1508 0.8875 32 1 5.9149 -2.1232 0.8882 33 1 5.9149 -2.1218 -0.8918 34 1 7.6712 -6.1268 2.0610 35 1 7.6600 -7.4970 0.9249 36 1 5.6970 -4.7483 2.3645 37 1 3.2409 -4.6287 2.2485 38 1 1.9962 -6.2095 0.8292 39 1 5.6702 -8.0302 -0.3586 40 1 7.9869 -7.3166 -1.3656 41 1 7.2211 -5.8315 -2.0791 42 1 9.3366 -4.5945 -2.0037 43 1 10.0825 -6.2492 -2.0690 44 1 9.9441 -4.7068 0.3680 45 1 9.9076 -6.5233 0.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774097182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:21 Heat of formation + Delta-G solvation = -98.850663 kcal Electronic energy + Delta-G solvation = -27798.895528 eV Core-core repulsion = 23889.198875 eV Total energy + Delta-G solvation = -3909.696652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.73846 -41.26993 -38.93218 -38.42749 -36.22308 -34.14380 -32.88343 -31.80347 -30.46192 -28.60544 -27.59825 -25.99898 -24.91018 -23.22250 -22.63882 -21.91839 -21.19511 -20.34814 -19.14283 -17.37010 -17.16133 -16.73514 -16.64261 -16.35052 -15.94786 -15.92372 -15.43717 -15.15674 -14.45595 -14.25065 -14.08938 -13.93194 -13.74271 -13.33359 -13.01550 -12.82069 -12.71083 -12.55290 -12.27575 -12.08211 -12.00856 -11.78961 -11.51299 -11.24120 -11.16545 -11.04004 -10.84019 -10.62078 -10.51313 -10.44300 -10.40690 -9.95363 -9.80355 -9.72014 -9.26553 -8.77688 -8.58181 -8.38632 -6.08615 -4.07488 1.30629 1.34988 2.24665 2.78908 3.28134 3.35963 3.38951 3.70119 4.02874 4.21562 4.37225 4.41319 4.52028 4.53972 4.75320 4.79310 4.91421 5.11375 5.17554 5.24923 5.27798 5.32432 5.35539 5.44726 5.47073 5.49545 5.51372 5.60051 5.66660 5.77127 5.81559 5.86707 5.98811 6.06034 6.16097 6.26055 6.38236 6.38653 6.47701 6.59129 6.67805 6.81098 7.04247 7.20558 7.31191 7.71157 7.90697 8.48158 8.95735 9.53266 11.04481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.004227 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.257103 B = 6622.687056 C = 8284.168621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.061 3.939 12 O -0.333 6.333 13 C 0.479 3.521 14 O -0.511 6.511 15 C -0.078 4.078 16 C -0.061 4.061 17 C -0.058 4.058 18 C -0.088 4.088 19 C -0.081 4.081 20 C -0.146 4.146 21 C 0.091 3.909 22 F -0.146 7.146 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.144 4.144 26 C -0.118 4.118 27 H 0.264 0.736 28 H 0.018 0.982 29 H 0.012 0.988 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.333 -16.755 1.928 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.012 4.012 12 O -0.249 6.249 13 C 0.322 3.678 14 O -0.399 6.399 15 C -0.080 4.080 16 C -0.098 4.098 17 C -0.058 4.058 18 C -0.107 4.107 19 C -0.099 4.099 20 C -0.165 4.165 21 C 0.072 3.928 22 F -0.125 7.125 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.156 4.156 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.324 -16.344 1.895 23.892 hybrid contribution 0.120 1.141 -0.283 1.182 sum 17.444 -15.203 1.612 23.195 Atomic orbital electron populations 1.69901 1.06261 1.26951 1.50868 1.24998 0.94713 0.99088 0.94484 0.86818 0.80378 0.83742 0.78600 1.20249 1.21291 1.19030 1.21029 0.88984 0.94591 1.51142 0.90801 1.19523 0.97550 0.91236 0.96519 1.21635 0.88737 1.00567 1.02907 1.23485 0.97158 0.78781 1.01799 1.86779 1.22571 1.33161 1.82371 1.22814 0.81682 0.90902 0.72451 1.90637 1.60966 1.42734 1.45597 1.21738 0.97071 0.90384 0.98765 1.20548 0.91173 0.99788 0.98291 1.19374 0.94659 0.95339 0.96466 1.20878 0.94221 0.96857 0.98713 1.21000 0.94022 0.97250 0.97600 1.21158 1.01079 0.95937 0.98301 1.17624 0.90044 0.91169 0.93936 1.91474 1.80132 1.68202 1.72644 1.20783 0.92115 1.01735 1.01960 1.23015 0.98099 1.00669 0.93892 1.22924 0.97043 1.01748 0.96426 1.22941 0.92004 1.03523 0.97103 0.92659 0.96413 0.96934 0.91812 0.91144 0.91756 0.91911 0.90039 0.89335 0.86410 0.84726 0.84898 0.85513 0.88531 0.90549 0.89816 0.90737 0.89789 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.10 -1.94 5.43 -26.74 -0.15 -2.08 16 11 C 0.06 1.03 5.47 37.16 0.20 1.23 16 12 O -0.33 -5.01 5.81 -39.24 -0.23 -5.24 16 13 C 0.48 6.69 6.57 36.00 0.24 6.93 16 14 O -0.51 -8.47 15.58 -18.75 -0.29 -8.76 16 15 C -0.08 -0.78 0.97 -154.84 -0.15 -0.93 16 16 C -0.06 -0.52 4.87 -27.88 -0.14 -0.65 16 17 C -0.06 -0.63 4.02 -104.63 -0.42 -1.05 16 18 C -0.09 -1.07 6.61 -39.58 -0.26 -1.33 16 19 C -0.08 -1.06 8.05 -39.59 -0.32 -1.38 16 20 C -0.15 -1.98 10.03 -39.51 -0.40 -2.38 16 21 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 22 F -0.15 -2.05 17.27 2.25 0.04 -2.01 16 23 C -0.15 -1.67 9.68 -39.51 -0.38 -2.05 16 24 C -0.12 -1.04 7.20 -25.83 -0.19 -1.22 16 25 C -0.14 -1.23 7.76 -25.83 -0.20 -1.43 16 26 C -0.12 -0.99 7.02 -25.92 -0.18 -1.17 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 29 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.29 5.42 -51.93 -0.28 1.01 16 32 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 33 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 36 H 0.12 1.36 8.04 -52.48 -0.42 0.93 16 37 H 0.13 1.73 7.50 -52.49 -0.39 1.34 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.10 0.63 7.99 -51.93 -0.41 0.21 16 41 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.84 7.42 -51.93 -0.39 0.45 16 45 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -31.60 367.43 -8.89 -40.50 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.88 Total: -0.34 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.17 Total: -19.88 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.52 Total: -14.00 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.60 -8.89 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774097182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.355 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds