Wall clock time and date at job start Tue Mar 31 2020 12:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99614 * 2 1 4 4 H 1.48500 * 109.46880 * 270.00170 * 3 2 1 5 5 H 1.48493 * 109.47045 * 30.00258 * 3 2 1 6 6 H 1.48497 * 109.46969 * 150.00337 * 3 2 1 7 7 C 1.37879 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99287 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00332 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47459 * 180.02562 * 10 9 7 12 12 O 1.45191 * 109.47594 * 179.97438 * 11 10 9 13 13 C 1.34223 * 117.00347 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00417 * 180.02562 * 13 12 11 16 16 C 1.53008 * 112.85009 * 309.66548 * 15 13 12 17 17 C 1.50699 * 109.46778 * 50.32863 * 16 15 13 18 18 C 1.38265 * 119.99210 * 269.98076 * 17 16 15 19 19 C 1.38223 * 120.05406 * 179.97438 * 18 17 16 20 20 C 1.38223 * 120.02411 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97448 * 359.74760 * 20 19 18 22 22 F 1.35099 * 120.02356 * 180.27548 * 21 20 19 23 23 C 1.38183 * 119.98467 * 90.00809 * 17 16 15 24 24 C 1.53784 * 113.61766 * 80.86018 * 15 13 12 25 25 C 1.53951 * 87.01828 * 89.23292 * 24 15 13 26 26 C 1.53773 * 87.11543 * 25.36510 * 25 24 15 27 27 H 0.97001 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46801 * 60.00059 * 9 7 2 29 29 H 1.09000 * 109.47012 * 300.00357 * 9 7 2 30 30 H 1.09002 * 109.47296 * 59.99817 * 10 9 7 31 31 H 1.09000 * 109.47212 * 299.99963 * 10 9 7 32 32 H 1.09002 * 109.47162 * 59.99557 * 11 10 9 33 33 H 1.09000 * 109.46733 * 300.00078 * 11 10 9 34 34 H 1.09001 * 109.46647 * 290.33368 * 16 15 13 35 35 H 1.08992 * 109.47295 * 170.33039 * 16 15 13 36 36 H 1.08004 * 119.96758 * 359.97438 * 18 17 16 37 37 H 1.08000 * 119.98736 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.01045 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.01017 * 359.97438 * 23 17 16 40 40 H 1.09004 * 113.61629 * 203.75316 * 24 15 13 41 41 H 1.09001 * 113.61162 * 334.65326 * 24 15 13 42 42 H 1.09004 * 113.53493 * 270.80895 * 25 24 15 43 43 H 1.08997 * 113.74376 * 139.94618 * 25 24 15 44 44 H 1.08996 * 113.61537 * 220.09250 * 26 25 24 45 45 H 1.09002 * 113.61450 * 89.18585 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6363 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 8 6.0357 -4.0052 -0.0027 13 6 7.3663 -4.1811 -0.0022 14 8 8.1023 -3.2228 -0.0018 15 6 7.9424 -5.5736 -0.0033 16 6 7.3374 -6.4677 1.0810 17 6 5.8338 -6.3962 1.0096 18 6 5.1517 -5.4419 1.7416 19 6 3.7726 -5.3748 1.6767 20 6 3.0737 -6.2623 0.8801 21 6 3.7559 -7.2152 0.1431 22 9 3.0742 -8.0796 -0.6401 23 6 5.1372 -7.2849 0.2130 24 6 7.9719 -6.2271 -1.3950 25 6 9.3645 -5.5957 -1.5736 26 6 9.4795 -5.6044 -0.0402 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6799 -0.8911 30 1 3.6579 -3.1496 -0.8925 31 1 3.6587 -3.1508 0.8875 32 1 5.9149 -2.1232 0.8882 33 1 5.9149 -2.1218 -0.8918 34 1 7.6712 -6.1268 2.0610 35 1 7.6600 -7.4970 0.9249 36 1 5.6970 -4.7483 2.3645 37 1 3.2409 -4.6287 2.2485 38 1 1.9962 -6.2095 0.8292 39 1 5.6702 -8.0302 -0.3586 40 1 7.9869 -7.3166 -1.3656 41 1 7.2211 -5.8315 -2.0791 42 1 9.3366 -4.5945 -2.0037 43 1 10.0825 -6.2492 -2.0690 44 1 9.9441 -4.7068 0.3680 45 1 9.9076 -6.5233 0.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774097182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:20 Heat of formation + Delta-G solvation = -113.705493 kcal Electronic energy + Delta-G solvation = -27799.539681 eV Core-core repulsion = 23889.198875 eV Total energy + Delta-G solvation = -3910.340806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.79518 -42.24189 -39.92890 -39.35646 -37.43587 -35.95542 -34.04054 -33.53282 -31.41837 -29.77526 -29.06431 -26.65888 -26.01002 -24.62951 -23.67388 -23.01443 -22.12216 -21.99446 -20.14530 -19.01825 -18.36263 -18.09905 -17.80480 -17.33869 -16.93909 -16.88074 -16.49643 -16.31794 -16.07870 -15.43733 -15.23654 -14.95921 -14.81693 -14.66201 -14.28018 -14.13813 -13.91065 -13.74220 -13.39744 -13.24014 -13.08681 -12.87607 -12.81073 -12.49156 -12.27570 -12.10967 -11.98763 -11.95084 -11.84230 -11.76389 -11.38329 -11.37070 -11.33941 -11.24037 -11.11192 -10.78548 -9.73032 -9.38263 -8.30865 -6.35227 0.33040 0.38071 1.16652 1.34489 1.35665 1.47117 1.70169 2.33853 2.73892 3.04409 3.25950 3.43530 3.52492 3.65377 3.87547 3.90935 3.95928 4.00488 4.01342 4.05168 4.21764 4.35952 4.39226 4.45272 4.53214 4.65248 4.73491 4.78438 4.83927 4.85586 4.87984 4.96088 5.05226 5.08529 5.11721 5.16412 5.21165 5.28731 5.33809 5.45920 5.47875 5.50941 5.57904 5.63002 5.65643 6.08194 6.25672 6.71284 6.76881 7.29207 8.85594 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.004227 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.257103 B = 6622.687056 C = 8284.168621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.036 0.964 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.071 3.929 12 O -0.334 6.334 13 C 0.474 3.526 14 O -0.540 6.540 15 C -0.082 4.082 16 C -0.057 4.057 17 C -0.053 4.053 18 C -0.093 4.093 19 C -0.094 4.094 20 C -0.166 4.166 21 C 0.073 3.927 22 F -0.154 7.154 23 C -0.138 4.138 24 C -0.115 4.115 25 C -0.146 4.146 26 C -0.108 4.108 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.868 -18.033 2.100 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.566 4.566 8 H 0.055 0.945 9 C -0.046 4.046 10 C -0.126 4.126 11 C -0.003 4.003 12 O -0.249 6.249 13 C 0.318 3.682 14 O -0.430 6.430 15 C -0.083 4.083 16 C -0.093 4.093 17 C -0.053 4.053 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.185 4.185 21 C 0.054 3.946 22 F -0.133 7.133 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.184 4.184 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.873 -17.642 2.069 27.408 hybrid contribution -1.011 1.464 -0.350 1.813 sum 19.862 -16.178 1.719 25.675 Atomic orbital electron populations 1.70051 1.08204 1.28154 1.52490 1.25937 0.95547 1.03260 0.94132 0.85735 0.79613 0.78641 0.79156 1.19399 1.20808 1.17024 1.21345 0.91509 0.93275 1.50475 0.94540 1.19449 0.94460 0.93920 0.96821 1.21369 0.90714 0.97991 1.02570 1.23109 0.95222 0.80106 1.01824 1.86791 1.23869 1.31615 1.82631 1.23793 0.80701 0.92593 0.71102 1.90625 1.61274 1.44200 1.46947 1.21904 0.98215 0.87843 1.00302 1.20685 0.88723 1.01602 0.98327 1.19678 0.96311 0.94150 0.95196 1.21040 0.93690 0.97396 0.99038 1.20996 0.94853 0.97375 0.98028 1.21204 1.00955 0.96947 0.99374 1.17860 0.91131 0.91297 0.94314 1.91449 1.80519 1.68409 1.72893 1.21088 0.91113 1.01999 1.01495 1.23132 0.97378 1.02498 0.92198 1.22904 0.97790 1.00785 0.96891 1.23018 0.90276 1.04473 0.96752 0.92449 0.95643 0.96507 0.93106 0.90702 0.91267 0.92343 0.88928 0.85482 0.85874 0.85551 0.85850 0.82559 0.85032 0.92572 0.92677 0.88302 0.91733 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -30.26 9.66 25.60 0.25 -30.02 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C -0.01 -0.42 4.04 29.84 0.12 -0.30 16 10 C -0.09 -3.46 5.43 30.59 0.17 -3.30 16 11 C 0.07 2.37 5.47 71.98 0.39 2.76 16 12 O -0.33 -9.73 5.81 -51.35 -0.30 -10.03 16 13 C 0.47 12.51 6.57 71.23 0.47 12.97 16 14 O -0.54 -17.46 15.58 21.97 0.34 -17.12 16 15 C -0.08 -1.35 0.97 -52.40 -0.05 -1.40 16 16 C -0.06 -0.70 4.87 29.85 0.15 -0.56 16 17 C -0.05 -1.02 4.02 -19.87 -0.08 -1.10 16 18 C -0.09 -2.17 6.61 22.27 0.15 -2.02 16 19 C -0.09 -2.55 8.05 22.26 0.18 -2.38 16 20 C -0.17 -4.71 10.03 22.31 0.22 -4.49 16 21 C 0.07 1.92 7.30 22.38 0.16 2.08 16 22 F -0.15 -4.31 17.27 44.97 0.78 -3.54 16 23 C -0.14 -2.79 9.68 22.31 0.22 -2.57 16 24 C -0.11 -1.57 7.20 31.18 0.22 -1.34 16 25 C -0.15 -2.05 7.76 31.18 0.24 -1.80 16 26 C -0.11 -1.39 7.02 31.12 0.22 -1.17 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 29 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.83 5.42 -2.39 -0.01 2.82 16 32 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 33 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 34 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 35 H 0.13 0.71 7.92 -2.39 -0.02 0.69 16 36 H 0.12 2.69 8.04 -2.91 -0.02 2.66 16 37 H 0.13 3.50 7.50 -2.91 -0.02 3.47 16 38 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.13 0.92 7.99 -2.38 -0.02 0.90 16 41 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 42 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.13 7.42 -2.39 -0.02 1.11 16 45 H 0.13 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -71.28 367.43 7.41 -63.87 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.92 Total: 13.45 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.49 Total: -33.67 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.30 Total: -59.14 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.04 Total: -27.14 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -71.28 7.41 -63.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774097182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.840 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds