Wall clock time and date at job start Tue Mar 31 2020 12:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46975 * 299.99853 * 3 2 1 6 6 H 1.48502 * 109.46792 * 59.99891 * 3 2 1 7 7 C 1.37877 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.45749 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.30987 * 181.37051 * 10 9 7 12 12 N 1.46920 * 108.89195 * 305.29089 * 11 10 9 13 13 C 1.34777 * 120.62966 * 233.67449 * 12 11 10 14 14 O 1.21583 * 120.00198 * 174.77556 * 13 12 11 15 15 N 1.34781 * 120.00020 * 354.77097 * 13 12 11 16 16 C 1.46501 * 120.00112 * 184.98394 * 15 13 12 17 17 C 1.50694 * 109.46984 * 180.02562 * 16 15 13 18 18 N 1.31137 * 126.55033 * 89.71181 * 17 16 15 19 19 C 1.34494 * 105.61288 * 179.91391 * 18 17 16 20 20 C 1.50698 * 126.28780 * 180.12662 * 19 18 17 21 21 C 1.52998 * 117.50035 * 188.90980 * 20 19 18 22 22 C 1.52997 * 60.00176 * 252.50963 * 21 20 19 23 23 N 1.29948 * 107.42461 * 0.35049 * 19 18 17 24 24 O 1.21294 * 110.25346 * 359.77912 * 23 19 18 25 25 C 1.47201 * 118.55840 * 53.54059 * 12 11 10 26 26 C 1.53041 * 109.44503 * 300.05963 * 9 7 2 27 27 H 0.96997 * 120.00090 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.45712 * 60.02524 * 9 7 2 29 29 H 1.08998 * 109.50639 * 61.41570 * 10 9 7 30 30 H 1.09008 * 109.52381 * 301.33323 * 10 9 7 31 31 H 1.09008 * 109.58625 * 65.14919 * 11 10 9 32 32 H 1.09004 * 109.58299 * 185.42928 * 11 10 9 33 33 H 0.96996 * 119.99952 * 4.98544 * 15 13 12 34 34 H 1.09007 * 109.46767 * 300.00070 * 16 15 13 35 35 H 1.09002 * 109.47181 * 59.99860 * 16 15 13 36 36 H 1.08997 * 115.55014 * 334.62376 * 20 19 18 37 37 H 1.08998 * 117.49941 * 0.02562 * 21 20 19 38 38 H 1.09004 * 117.49591 * 145.01908 * 21 20 19 39 39 H 1.08996 * 117.50344 * 252.50777 * 22 21 20 40 40 H 1.09004 * 117.51404 * 107.48031 * 22 21 20 41 41 H 1.09000 * 109.53945 * 186.66968 * 25 12 11 42 42 H 1.09004 * 109.67937 * 66.36696 * 25 12 11 43 43 H 1.08997 * 109.50104 * 298.57584 * 26 9 7 44 44 H 1.09006 * 109.49750 * 58.67472 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6621 0.0018 11 6 1.4768 -4.9866 -0.0328 12 7 0.5221 -5.0117 1.0837 13 6 0.5134 -6.0383 1.9568 14 8 -0.2151 -6.0030 2.9296 15 7 1.3122 -7.1044 1.7515 16 6 1.2244 -8.2671 2.6385 17 6 2.2162 -9.3120 2.1965 18 7 3.4609 -9.4248 2.5935 19 6 3.9537 -10.4926 1.9408 20 6 5.3524 -11.0413 2.0566 21 6 5.7658 -12.1358 1.0707 22 6 5.5073 -12.4854 2.5376 23 7 3.0035 -10.9614 1.1885 24 8 1.9970 -10.2974 1.3206 25 6 -0.4209 -3.8907 1.2285 26 6 0.3699 -2.5787 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8899 29 1 2.8553 -3.6188 0.9045 30 1 2.8893 -3.5921 -0.8753 31 1 0.9378 -5.0717 -0.9764 32 1 2.1756 -5.8175 0.0651 33 1 1.9452 -7.1017 1.0166 34 1 1.4496 -7.9622 3.6605 35 1 0.2169 -8.6810 2.5964 36 1 6.1147 -10.3246 2.3622 37 1 5.0262 -12.4588 0.3381 38 1 6.8003 -12.1392 0.7273 39 1 6.3716 -12.7189 3.1593 40 1 4.5974 -13.0386 2.7706 41 1 -0.9746 -3.9983 2.1612 42 1 -1.1164 -3.8853 0.3893 43 1 0.9972 -2.5456 2.1400 44 1 -0.3227 -1.7370 1.2600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781800731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:25 Heat of formation + Delta-G solvation = 72.537684 kcal Electronic energy + Delta-G solvation = -26423.425841 eV Core-core repulsion = 22573.373858 eV Total energy + Delta-G solvation = -3850.051983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.99009 -40.08817 -38.14112 -37.16454 -36.00008 -34.93869 -33.60112 -32.37391 -31.06875 -30.17378 -27.74854 -25.96559 -25.70262 -23.69105 -23.05278 -22.89781 -22.23194 -20.88992 -20.40501 -19.15466 -18.47801 -18.13834 -17.68349 -16.38811 -16.22424 -16.04642 -15.49394 -15.34595 -14.77129 -14.53460 -14.10912 -13.83897 -13.66512 -13.10401 -13.05822 -12.76919 -12.66160 -12.59168 -12.45626 -12.18367 -12.06332 -11.87465 -11.47575 -11.26608 -11.14931 -11.05058 -10.96242 -10.64475 -10.46222 -10.18177 -10.08399 -9.87957 -9.58913 -9.27851 -9.21645 -8.92283 -8.38446 -7.98603 -6.03077 -4.09613 0.63173 1.69308 2.29862 2.90751 3.07341 3.27307 3.28971 3.35943 3.38851 3.39806 3.68240 4.05647 4.22633 4.30354 4.40591 4.42067 4.74141 5.07189 5.10707 5.13593 5.25246 5.26833 5.29060 5.36392 5.51770 5.58043 5.61201 5.71373 5.78270 5.98578 6.20626 6.24134 6.38906 6.46493 6.58079 6.72078 6.94051 7.02251 7.20175 7.41229 7.69489 7.76719 7.91585 8.03766 8.13983 8.39054 8.75972 8.93811 9.55639 11.02372 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002415 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.015979 B =11591.207940 C =12474.797561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.614 5.614 13 C 0.712 3.288 14 O -0.594 6.594 15 N -0.751 5.751 16 C 0.238 3.762 17 C 0.170 3.830 18 N -0.457 5.457 19 C 0.200 3.800 20 C -0.081 4.081 21 C -0.158 4.158 22 C -0.156 4.156 23 N -0.379 5.379 24 O 0.088 5.912 25 C 0.126 3.874 26 C -0.124 4.124 27 H 0.260 0.740 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.399 0.601 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 -22.507 2.305 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.350 5.350 13 C 0.414 3.586 14 O -0.473 6.473 15 N -0.414 5.414 16 C 0.111 3.889 17 C -0.051 4.051 18 N -0.191 5.191 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.196 4.196 22 C -0.194 4.194 23 N -0.084 5.084 24 O 0.028 5.972 25 C 0.005 3.995 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.475 -22.925 2.712 23.976 hybrid contribution 0.766 1.071 -0.377 1.370 sum 7.241 -21.855 2.335 23.141 Atomic orbital electron populations 1.69848 1.05831 1.26400 1.50787 1.24964 0.94871 0.99080 0.95079 0.86565 0.80122 0.83903 0.77573 1.19885 1.21069 1.21035 1.21214 0.92901 0.90565 1.50403 0.92711 1.18635 0.92573 0.91532 0.94230 1.22016 0.98964 0.94208 1.01026 1.21739 0.91108 0.99003 0.89242 1.47518 1.37934 1.21226 1.28311 1.15645 0.80417 0.79604 0.82935 1.90897 1.45616 1.80841 1.29915 1.45117 1.44282 1.16588 1.35374 1.19376 0.94496 0.79872 0.95116 1.28790 0.93365 0.93013 0.89976 1.71921 1.06268 1.16570 1.24318 1.24848 0.97805 0.91525 0.92989 1.20105 0.88861 0.92912 1.08211 1.23095 1.03391 0.99923 0.93155 1.23089 1.04114 0.94555 0.97666 1.74606 0.94751 1.17342 1.21733 1.85345 1.31444 1.32224 1.48180 1.21876 0.90759 0.85415 1.01462 1.22034 1.00113 0.94851 0.99254 0.92984 0.95413 0.92813 0.92100 0.91657 0.92535 0.76364 0.86748 0.87670 0.84430 0.87777 0.87274 0.87218 0.88401 0.90371 0.92269 0.94233 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 11.30 55.43 0.63 -23.83 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.48 8.56 -34.44 -0.29 -13.78 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 11 C 0.11 1.74 6.38 -3.71 -0.02 1.71 16 12 N -0.61 -10.63 2.98 -178.27 -0.53 -11.16 16 13 C 0.71 11.88 8.30 -86.91 -0.72 11.16 16 14 O -0.59 -11.66 15.79 5.29 0.08 -11.57 16 15 N -0.75 -9.44 5.46 -66.41 -0.36 -9.80 16 16 C 0.24 2.43 6.30 -5.20 -0.03 2.40 16 17 C 0.17 1.80 7.88 -13.06 -0.10 1.69 16 18 N -0.46 -5.42 11.55 -9.87 -0.11 -5.53 16 19 C 0.20 2.21 7.74 -156.37 -1.21 1.00 16 20 C -0.08 -0.66 6.33 -91.77 -0.58 -1.24 16 21 C -0.16 -1.02 10.14 -26.73 -0.27 -1.29 16 22 C -0.16 -0.97 10.23 -26.73 -0.27 -1.25 16 23 N -0.38 -4.37 11.77 30.90 0.36 -4.00 16 24 O 0.09 0.97 11.31 18.10 0.20 1.17 16 25 C 0.13 2.45 6.45 -3.56 -0.02 2.42 16 26 C -0.12 -2.80 5.15 -26.61 -0.14 -2.94 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.06 0.71 5.64 -51.93 -0.29 0.41 16 33 H 0.40 4.53 5.95 -40.82 -0.24 4.29 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.77 7.91 -51.93 -0.41 0.36 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.54 7.01 -51.93 -0.36 1.17 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 2.65 6.03 -51.93 -0.31 2.33 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -30.74 363.47 -9.61 -40.35 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.24 Total: 3.20 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -4.10 Total: -0.10 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.02 Total: -54.32 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.29 Total: -10.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.74 -9.61 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781800731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.891 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds